HEADER VIRAL PROTEIN 24-APR-20 6WOJ TITLE STRUCTURE OF THE SARS-COV-2 MACRODOMAIN (NSP3) IN COMPLEX WITH ADP- TITLE 2 RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1023-1197; COMPND 5 SYNONYM: MACRO DOMAIN,PP1AB,ORF1AB POLYPROTEIN,NSP3,PL2-PRO,PAPAIN- COMPND 6 LIKE PROTEASE,PAPAIN-LIKE PROTEINASE,PL-PRO; COMPND 7 EC: 3.4.19.121, 3.4.22.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTBSG KEYWDS SARS-COV-2, COVID-19, MACRODOMAIN, ADP-RIBOSE BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,M.M.KASHIPATHY,K.P.BATTAILE,F.P.GAO,A.R.FEHR REVDAT 6 18-OCT-23 6WOJ 1 REMARK REVDAT 5 27-JAN-21 6WOJ 1 COMPND JRNL REVDAT 4 18-NOV-20 6WOJ 1 JRNL REVDAT 3 10-JUN-20 6WOJ 1 COMPND REVDAT 2 13-MAY-20 6WOJ 1 COMPND REMARK SHEET SITE REVDAT 2 2 1 ATOM REVDAT 1 06-MAY-20 6WOJ 0 JRNL AUTH Y.M.O.ALHAMMAD,M.M.KASHIPATHY,A.ROY,J.P.GAGNE,P.MCDONALD, JRNL AUTH 2 P.GAO,L.NONFOUX,K.P.BATTAILE,D.K.JOHNSON,E.D.HOLMSTROM, JRNL AUTH 3 G.G.POIRIER,S.LOVELL,A.R.FEHR JRNL TITL THE SARS-COV-2 CONSERVED MACRODOMAIN IS A JRNL TITL 2 MONO-ADP-RIBOSYLHYDROLASE. JRNL REF J.VIROL. V. 95 2021 JRNL REFN ESSN 1098-5514 JRNL PMID 33158944 JRNL DOI 10.1128/JVI.01969-20 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3846 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 41440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0000 - 5.3000 0.98 2820 186 0.1819 0.1842 REMARK 3 2 5.3000 - 4.2100 0.98 2817 137 0.1395 0.2054 REMARK 3 3 4.2100 - 3.6800 0.98 2822 124 0.1610 0.2126 REMARK 3 4 3.6800 - 3.3400 0.99 2831 138 0.1843 0.2398 REMARK 3 5 3.3400 - 3.1000 0.99 2821 140 0.1946 0.2278 REMARK 3 6 3.1000 - 2.9200 0.99 2816 153 0.1991 0.2722 REMARK 3 7 2.9200 - 2.7700 0.99 2814 136 0.2145 0.3150 REMARK 3 8 2.7700 - 2.6500 0.99 2808 157 0.2128 0.2892 REMARK 3 9 2.6500 - 2.5500 0.99 2810 152 0.2190 0.2586 REMARK 3 10 2.5500 - 2.4600 0.99 2832 128 0.2174 0.2993 REMARK 3 11 2.4600 - 2.3800 0.99 2782 151 0.2302 0.3073 REMARK 3 12 2.3800 - 2.3200 0.99 2840 120 0.2389 0.3211 REMARK 3 13 2.3200 - 2.2600 0.99 2843 132 0.2612 0.3156 REMARK 3 14 2.2600 - 2.2000 0.99 2818 112 0.3539 0.4235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6W02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M NAH2PO4/K2HPO4, 0.1 M NDSB-256, REMARK 280 PH 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.58250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ILE A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 172 REMARK 465 SER A 173 REMARK 465 GLU A 174 REMARK 465 LYS A 175 REMARK 465 GLY B 0 REMARK 465 ILE B 1 REMARK 465 GLU B 2 REMARK 465 SER B 173 REMARK 465 GLU B 174 REMARK 465 LYS B 175 REMARK 465 GLY C 0 REMARK 465 ILE C 1 REMARK 465 GLU C 2 REMARK 465 LYS C 172 REMARK 465 SER C 173 REMARK 465 GLU C 174 REMARK 465 LYS C 175 REMARK 465 GLY D 0 REMARK 465 ILE D 1 REMARK 465 GLU D 2 REMARK 465 SER D 173 REMARK 465 GLU D 174 REMARK 465 LYS D 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CE NZ REMARK 470 LYS A 28 CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 55 CD CE NZ REMARK 470 LYS A 76 CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 ARG A 141 CD NE CZ NH1 NH2 REMARK 470 ARG A 148 CD NE CZ NH1 NH2 REMARK 470 LYS A 163 CD CE NZ REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 MET A 171 SD CE REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 LYS B 29 CD CE NZ REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 55 CD CE NZ REMARK 470 LYS B 76 CD CE NZ REMARK 470 LYS B 90 CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLN B 107 CG CD OE1 NE2 REMARK 470 LYS B 110 CE NZ REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 ARG B 141 CD NE CZ NH1 NH2 REMARK 470 ARG B 148 CD NE CZ NH1 NH2 REMARK 470 LYS B 163 CD CE NZ REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 LYS B 172 CE NZ REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 LYS C 55 CD CE NZ REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 LYS C 102 CD CE NZ REMARK 470 GLN C 107 CG CD OE1 NE2 REMARK 470 LYS C 110 CE NZ REMARK 470 ARG C 141 CD NE CZ NH1 NH2 REMARK 470 ARG C 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 158 CE NZ REMARK 470 LYS C 163 CE NZ REMARK 470 GLU C 170 CG CD OE1 OE2 REMARK 470 LYS D 11 CE NZ REMARK 470 GLU D 25 CD OE1 OE2 REMARK 470 LYS D 28 CE NZ REMARK 470 LYS D 29 CG CD CE NZ REMARK 470 LYS D 31 CG CD CE NZ REMARK 470 LYS D 44 CG CD CE NZ REMARK 470 LYS D 55 CD CE NZ REMARK 470 ASN D 58 CG OD1 ND2 REMARK 470 LYS D 76 CD CE NZ REMARK 470 LYS D 90 CE NZ REMARK 470 LYS D 102 CG CD CE NZ REMARK 470 GLN D 107 CG CD OE1 NE2 REMARK 470 LYS D 110 CD CE NZ REMARK 470 ARG D 141 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 148 CD NE CZ NH1 NH2 REMARK 470 LYS D 163 CD CE NZ REMARK 470 GLU D 170 CG CD OE1 OE2 REMARK 470 MET D 171 SD CE REMARK 470 LYS D 172 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 43 29.69 49.68 REMARK 500 HIS A 86 -130.26 55.27 REMARK 500 HIS B 86 -128.77 54.92 REMARK 500 GLU B 170 20.24 -56.59 REMARK 500 MET B 171 4.99 -52.30 REMARK 500 ASN C 59 1.58 83.78 REMARK 500 HIS C 86 -132.81 49.86 REMARK 500 SER C 128 -2.01 66.55 REMARK 500 GLU C 170 67.95 -63.11 REMARK 500 ALA D 21 147.98 -175.22 REMARK 500 ASN D 59 8.21 81.77 REMARK 500 HIS D 86 -127.80 50.17 REMARK 500 GLU D 170 40.99 -70.33 REMARK 500 MET D 171 20.80 -76.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR D 201 DBREF 6WOJ A 1 175 UNP P0DTD1 R1AB_SARS2 1023 1197 DBREF 6WOJ B 1 175 UNP P0DTD1 R1AB_SARS2 1023 1197 DBREF 6WOJ C 1 175 UNP P0DTD1 R1AB_SARS2 1023 1197 DBREF 6WOJ D 1 175 UNP P0DTD1 R1AB_SARS2 1023 1197 SEQADV 6WOJ GLY A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 6WOJ GLY B 0 UNP P0DTD1 EXPRESSION TAG SEQADV 6WOJ GLY C 0 UNP P0DTD1 EXPRESSION TAG SEQADV 6WOJ GLY D 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 176 GLY ILE GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU SEQRES 2 A 176 THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU SEQRES 3 A 176 GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA SEQRES 4 A 176 ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY SEQRES 5 A 176 ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SEQRES 6 A 176 SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL SEQRES 7 A 176 GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS SEQRES 8 A 176 HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY SEQRES 9 A 176 GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE SEQRES 10 A 176 ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA SEQRES 11 A 176 GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL SEQRES 12 A 176 CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL SEQRES 13 A 176 PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE SEQRES 14 A 176 LEU GLU MET LYS SER GLU LYS SEQRES 1 B 176 GLY ILE GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU SEQRES 2 B 176 THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU SEQRES 3 B 176 GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA SEQRES 4 B 176 ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY SEQRES 5 B 176 ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SEQRES 6 B 176 SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL SEQRES 7 B 176 GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS SEQRES 8 B 176 HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY SEQRES 9 B 176 GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE SEQRES 10 B 176 ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA SEQRES 11 B 176 GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL SEQRES 12 B 176 CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL SEQRES 13 B 176 PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE SEQRES 14 B 176 LEU GLU MET LYS SER GLU LYS SEQRES 1 C 176 GLY ILE GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU SEQRES 2 C 176 THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU SEQRES 3 C 176 GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA SEQRES 4 C 176 ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY SEQRES 5 C 176 ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SEQRES 6 C 176 SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL SEQRES 7 C 176 GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS SEQRES 8 C 176 HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY SEQRES 9 C 176 GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE SEQRES 10 C 176 ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA SEQRES 11 C 176 GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL SEQRES 12 C 176 CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL SEQRES 13 C 176 PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE SEQRES 14 C 176 LEU GLU MET LYS SER GLU LYS SEQRES 1 D 176 GLY ILE GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU SEQRES 2 D 176 THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU SEQRES 3 D 176 GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA SEQRES 4 D 176 ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY SEQRES 5 D 176 ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SEQRES 6 D 176 SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL SEQRES 7 D 176 GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS SEQRES 8 D 176 HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY SEQRES 9 D 176 GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE SEQRES 10 D 176 ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA SEQRES 11 D 176 GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL SEQRES 12 D 176 CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL SEQRES 13 D 176 PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE SEQRES 14 D 176 LEU GLU MET LYS SER GLU LYS HET APR A 201 36 HET APR B 201 36 HET APR C 201 36 HET APR D 201 36 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 5 APR 4(C15 H23 N5 O14 P2) FORMUL 9 HOH *358(H2 O) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 48 THR A 57 1 10 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 ASN A 99 GLY A 103 5 5 HELIX 5 AA5 GLN A 107 ASN A 115 1 9 HELIX 6 AA6 PHE A 116 HIS A 119 5 4 HELIX 7 AA7 ASP A 135 VAL A 147 1 13 HELIX 8 AA8 ASP A 157 LEU A 169 1 13 HELIX 9 AA9 ASP B 22 LYS B 31 1 10 HELIX 10 AB1 GLY B 48 THR B 57 1 10 HELIX 11 AB2 ASN B 59 GLY B 73 1 15 HELIX 12 AB3 ASN B 99 GLY B 103 5 5 HELIX 13 AB4 GLN B 107 ASN B 115 1 9 HELIX 14 AB5 PHE B 116 HIS B 119 5 4 HELIX 15 AB6 ASP B 135 VAL B 147 1 13 HELIX 16 AB7 ASP B 157 LEU B 169 1 13 HELIX 17 AB8 ASP C 22 LYS C 31 1 10 HELIX 18 AB9 GLY C 48 THR C 57 1 10 HELIX 19 AC1 ASN C 59 GLY C 73 1 15 HELIX 20 AC2 ASN C 99 GLY C 103 5 5 HELIX 21 AC3 GLN C 107 ASN C 115 1 9 HELIX 22 AC4 PHE C 116 HIS C 119 5 4 HELIX 23 AC5 ASP C 135 VAL C 147 1 13 HELIX 24 AC6 ASP C 157 GLU C 170 1 14 HELIX 25 AC7 ASP D 22 LYS D 31 1 10 HELIX 26 AC8 GLY D 48 THR D 57 1 10 HELIX 27 AC9 ASN D 59 GLY D 73 1 15 HELIX 28 AD1 ASN D 99 GLY D 103 5 5 HELIX 29 AD2 GLN D 107 ASN D 115 1 9 HELIX 30 AD3 PHE D 116 HIS D 119 5 4 HELIX 31 AD4 ASP D 135 VAL D 147 1 13 HELIX 32 AD5 ASP D 157 LEU D 169 1 13 SHEET 1 AA1 4 LEU A 10 LYS A 11 0 SHEET 2 AA1 4 VAL A 16 ASN A 20 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 VAL A 155 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 39 0 SHEET 2 AA2 3 HIS A 91 VAL A 96 1 O VAL A 95 N ALA A 39 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N CYS A 81 O HIS A 94 SHEET 1 AA3 4 LEU B 10 LYS B 11 0 SHEET 2 AA3 4 VAL B 16 ASN B 20 -1 O ILE B 18 N LEU B 10 SHEET 3 AA3 4 ASN B 150 VAL B 155 1 O VAL B 155 N LYS B 19 SHEET 4 AA3 4 VAL B 121 ALA B 124 1 N LEU B 122 O TYR B 152 SHEET 1 AA4 3 VAL B 34 ALA B 39 0 SHEET 2 AA4 3 HIS B 91 VAL B 96 1 O VAL B 95 N ALA B 39 SHEET 3 AA4 3 SER B 80 SER B 84 -1 N LEU B 83 O CYS B 92 SHEET 1 AA5 4 LEU C 10 THR C 13 0 SHEET 2 AA5 4 VAL C 16 ASN C 20 -1 O ILE C 18 N LEU C 10 SHEET 3 AA5 4 ASN C 150 VAL C 155 1 O LEU C 153 N TYR C 17 SHEET 4 AA5 4 VAL C 121 ALA C 124 1 N ALA C 124 O TYR C 152 SHEET 1 AA6 3 VAL C 34 ALA C 39 0 SHEET 2 AA6 3 HIS C 91 VAL C 96 1 O VAL C 95 N ASN C 37 SHEET 3 AA6 3 SER C 80 SER C 84 -1 N LEU C 83 O CYS C 92 SHEET 1 AA7 4 LEU D 10 LYS D 11 0 SHEET 2 AA7 4 VAL D 16 ASN D 20 -1 O ILE D 18 N LEU D 10 SHEET 3 AA7 4 ASN D 150 VAL D 155 1 O VAL D 155 N LYS D 19 SHEET 4 AA7 4 VAL D 121 ALA D 124 1 N LEU D 122 O TYR D 152 SHEET 1 AA8 3 VAL D 34 ALA D 39 0 SHEET 2 AA8 3 HIS D 91 VAL D 96 1 O VAL D 95 N ALA D 39 SHEET 3 AA8 3 SER D 80 SER D 84 -1 N LEU D 83 O CYS D 92 SITE 1 AC1 26 ASP A 22 ILE A 23 ALA A 38 ASN A 40 SITE 2 AC1 26 LYS A 44 GLY A 46 GLY A 47 GLY A 48 SITE 3 AC1 26 VAL A 49 ALA A 50 LEU A 126 SER A 128 SITE 4 AC1 26 ALA A 129 GLY A 130 ILE A 131 PHE A 132 SITE 5 AC1 26 ALA A 154 PHE A 156 HOH A 304 HOH A 306 SITE 6 AC1 26 HOH A 321 HOH A 324 HOH A 329 HOH A 334 SITE 7 AC1 26 HOH A 350 HOH D 335 SITE 1 AC2 26 ASP B 22 ILE B 23 ALA B 38 ASN B 40 SITE 2 AC2 26 LYS B 44 HIS B 45 GLY B 46 GLY B 47 SITE 3 AC2 26 GLY B 48 VAL B 49 ALA B 50 LEU B 126 SITE 4 AC2 26 SER B 128 ALA B 129 GLY B 130 ILE B 131 SITE 5 AC2 26 PHE B 132 ALA B 154 PHE B 156 HOH B 307 SITE 6 AC2 26 HOH B 311 HOH B 315 HOH B 348 HOH B 353 SITE 7 AC2 26 HOH B 366 HOH B 369 SITE 1 AC3 26 ASP C 22 ILE C 23 ALA C 38 ASN C 40 SITE 2 AC3 26 LYS C 44 HIS C 45 GLY C 46 GLY C 47 SITE 3 AC3 26 GLY C 48 VAL C 49 ALA C 50 LEU C 126 SITE 4 AC3 26 SER C 128 ALA C 129 GLY C 130 ILE C 131 SITE 5 AC3 26 PHE C 132 ALA C 154 PHE C 156 HOH C 317 SITE 6 AC3 26 HOH C 322 HOH C 326 HOH C 338 HOH C 357 SITE 7 AC3 26 HOH C 359 HOH C 363 SITE 1 AC4 23 ASP D 22 ILE D 23 ALA D 38 ASN D 40 SITE 2 AC4 23 LYS D 44 GLY D 46 GLY D 47 GLY D 48 SITE 3 AC4 23 VAL D 49 LEU D 126 SER D 128 ALA D 129 SITE 4 AC4 23 GLY D 130 ILE D 131 PHE D 132 ALA D 154 SITE 5 AC4 23 PHE D 156 HOH D 308 HOH D 316 HOH D 317 SITE 6 AC4 23 HOH D 319 HOH D 334 HOH D 339 CRYST1 59.715 83.165 84.237 90.00 94.37 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016746 0.000000 0.001280 0.00000 SCALE2 0.000000 0.012024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011906 0.00000