HEADER LIPID BINDING PROTEIN 26-APR-20 6WP2 TITLE THE CRYSTAL STRUCTURE OF APO ZINC-BOUND DOMAIN SWAPPED-TRIMER TITLE 2 Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H VARIANT OF HCRBPII COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOL-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CELLULAR RETINOL-BINDING PROTEIN II,CRBP-II; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBP2, CRBP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS ILBP, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GHANBARPOUR,J.GEIGER REVDAT 3 18-OCT-23 6WP2 1 REMARK REVDAT 2 05-MAY-21 6WP2 1 JRNL REVDAT 1 19-AUG-20 6WP2 0 JRNL AUTH A.GHANBARPOUR,E.M.SANTOS,C.PINGER,Z.ASSAR,S.HOSSAINI NASR, JRNL AUTH 2 C.VASILEIOU,D.SPENCE,B.BORHAN,J.H.GEIGER JRNL TITL HUMAN CELLULAR RETINOL BINDING PROTEIN II FORMS A JRNL TITL 2 DOMAIN-SWAPPED TRIMER REPRESENTING A NOVEL FOLD AND A NEW JRNL TITL 3 TEMPLATE FOR PROTEIN ENGINEERING. JRNL REF CHEMBIOCHEM V. 21 3192 2020 JRNL REFN ESSN 1439-7633 JRNL PMID 32608180 JRNL DOI 10.1002/CBIC.202000405 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1700 - 5.5000 1.00 1391 156 0.2146 0.2942 REMARK 3 2 5.5000 - 4.3600 1.00 1319 145 0.1857 0.2745 REMARK 3 3 4.3600 - 3.8100 1.00 1311 147 0.1976 0.2642 REMARK 3 4 3.8100 - 3.4600 1.00 1291 144 0.2192 0.3009 REMARK 3 5 3.4600 - 3.2100 1.00 1272 140 0.2364 0.3121 REMARK 3 6 3.2100 - 3.0300 1.00 1285 143 0.2335 0.3566 REMARK 3 7 3.0300 - 2.8700 1.00 1269 141 0.2375 0.3318 REMARK 3 8 2.8700 - 2.7500 1.00 1273 140 0.2804 0.4228 REMARK 3 9 2.7500 - 2.6400 1.00 1278 142 0.2898 0.4106 REMARK 3 10 2.6400 - 2.5500 1.00 1250 138 0.2933 0.4226 REMARK 3 11 2.5500 - 2.4800 0.93 1187 133 0.2870 0.4077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.346 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3382 REMARK 3 ANGLE : 1.117 4567 REMARK 3 CHIRALITY : 0.057 492 REMARK 3 PLANARITY : 0.005 582 REMARK 3 DIHEDRAL : 3.772 2725 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000246306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15764 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RCT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM IODIDE, PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.25650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.17250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.22550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.17250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.25650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.22550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -270.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 LEU A 58 CG CD1 CD2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 ARG B 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 52 CG CD CE NZ REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 GLU C 102 CG CD OE1 OE2 REMARK 470 GLU C 111 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 72 O HOH C 301 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 100 CG GLU A 100 CD -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 100 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 32 -72.42 -69.09 REMARK 500 VAL A 34 -28.95 130.61 REMARK 500 ALA A 53 117.45 54.70 REMARK 500 SER A 76 -4.01 61.69 REMARK 500 LEU A 77 -98.97 -136.59 REMARK 500 ASN B 13 98.20 -163.85 REMARK 500 SER B 55 -106.53 -110.57 REMARK 500 THR B 56 152.77 74.60 REMARK 500 SER B 76 -21.75 73.58 REMARK 500 LEU B 77 -89.13 -129.23 REMARK 500 GLU C 11 -35.57 -134.34 REMARK 500 ASN C 13 88.69 -161.40 REMARK 500 GLN C 44 -106.60 -126.47 REMARK 500 ASP C 45 110.12 57.50 REMARK 500 THR C 74 89.07 -63.09 REMARK 500 LEU C 77 -102.48 -126.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 NE2 REMARK 620 2 HIS A 57 NE2 14.8 REMARK 620 3 HIS B 57 NE2 98.9 101.4 REMARK 620 4 HIS B 57 NE2 85.6 88.5 13.3 REMARK 620 5 HIS C 57 NE2 79.7 65.7 83.8 81.2 REMARK 620 6 HIS C 57 NE2 86.0 72.5 77.0 75.8 8.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 NE2 REMARK 620 2 HIS A 57 NE2 19.1 REMARK 620 3 HIS B 57 NE2 123.1 141.7 REMARK 620 4 HIS B 57 NE2 120.4 139.3 16.1 REMARK 620 5 HIS C 57 NE2 104.6 89.6 112.2 125.6 REMARK 620 6 HIS C 57 NE2 115.8 101.2 102.3 114.8 11.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GOL B 201 O1 REMARK 620 2 GOL B 201 O2 96.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 203 DBREF 6WP2 A 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 6WP2 B 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 6WP2 C 1 133 UNP P50120 RET2_HUMAN 2 134 SEQADV 6WP2 PHE A 4 UNP P50120 GLN 5 ENGINEERED MUTATION SEQADV 6WP2 PHE A 38 UNP P50120 GLN 39 ENGINEERED MUTATION SEQADV 6WP2 ASP A 40 UNP P50120 LYS 41 ENGINEERED MUTATION SEQADV 6WP2 ALA A 53 UNP P50120 THR 54 ENGINEERED MUTATION SEQADV 6WP2 HIS A 57 UNP P50120 PHE 58 ENGINEERED MUTATION SEQADV 6WP2 LEU A 58 UNP P50120 ARG 59 ENGINEERED MUTATION SEQADV 6WP2 LYS A 108 UNP P50120 GLN 109 ENGINEERED MUTATION SEQADV 6WP2 PHE B 4 UNP P50120 GLN 5 ENGINEERED MUTATION SEQADV 6WP2 PHE B 38 UNP P50120 GLN 39 ENGINEERED MUTATION SEQADV 6WP2 ASP B 40 UNP P50120 LYS 41 ENGINEERED MUTATION SEQADV 6WP2 ALA B 53 UNP P50120 THR 54 ENGINEERED MUTATION SEQADV 6WP2 HIS B 57 UNP P50120 PHE 58 ENGINEERED MUTATION SEQADV 6WP2 LEU B 58 UNP P50120 ARG 59 ENGINEERED MUTATION SEQADV 6WP2 LYS B 108 UNP P50120 GLN 109 ENGINEERED MUTATION SEQADV 6WP2 PHE C 4 UNP P50120 GLN 5 ENGINEERED MUTATION SEQADV 6WP2 PHE C 38 UNP P50120 GLN 39 ENGINEERED MUTATION SEQADV 6WP2 ASP C 40 UNP P50120 LYS 41 ENGINEERED MUTATION SEQADV 6WP2 ALA C 53 UNP P50120 THR 54 ENGINEERED MUTATION SEQADV 6WP2 HIS C 57 UNP P50120 PHE 58 ENGINEERED MUTATION SEQADV 6WP2 LEU C 58 UNP P50120 ARG 59 ENGINEERED MUTATION SEQADV 6WP2 LYS C 108 UNP P50120 GLN 109 ENGINEERED MUTATION SEQRES 1 A 133 THR ARG ASP PHE ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 A 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 A 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR PHE THR SEQRES 4 A 133 ASP VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 A 133 ALA THR SER THR HIS LEU ASN TYR ASP VAL ASP PHE THR SEQRES 6 A 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 A 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 A 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 A 133 GLY TRP LYS LYS TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 A 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 A 133 LYS LYS LYS SEQRES 1 B 133 THR ARG ASP PHE ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 B 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 B 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR PHE THR SEQRES 4 B 133 ASP VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 B 133 ALA THR SER THR HIS LEU ASN TYR ASP VAL ASP PHE THR SEQRES 6 B 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 B 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 B 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 B 133 GLY TRP LYS LYS TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 B 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 B 133 LYS LYS LYS SEQRES 1 C 133 THR ARG ASP PHE ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 C 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 C 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR PHE THR SEQRES 4 C 133 ASP VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 C 133 ALA THR SER THR HIS LEU ASN TYR ASP VAL ASP PHE THR SEQRES 6 C 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 C 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 C 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 C 133 GLY TRP LYS LYS TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 C 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 C 133 LYS LYS LYS HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET GOL A 206 6 HET GOL A 207 6 HET GOL B 201 6 HET GOL B 202 6 HET ZN C 201 1 HET GOL C 202 6 HET ACT C 203 4 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ZN 6(ZN 2+) FORMUL 9 GOL 5(C3 H8 O3) FORMUL 15 ACT C2 H3 O2 1- FORMUL 16 HOH *13(H2 O) HELIX 1 AA1 ASN A 15 LEU A 23 1 9 HELIX 2 AA2 ASP A 26 ALA A 33 1 8 HELIX 3 AA3 ASN B 15 LEU B 23 1 9 HELIX 4 AA4 ASP B 26 VAL B 34 1 9 HELIX 5 AA5 ASN C 15 LEU C 23 1 9 HELIX 6 AA6 ASP C 26 VAL C 34 1 9 SHEET 1 AA1 4 THR A 54 HIS A 57 0 SHEET 2 AA1 4 LEU A 36 ASP A 45 -1 N THR A 37 O THR A 56 SHEET 3 AA1 4 ASN A 48 THR A 51 -1 O LYS A 50 N ASP A 43 SHEET 4 AA1 4 VAL B 62 THR B 65 -1 O PHE B 64 N PHE A 49 SHEET 1 AA2 9 THR A 54 HIS A 57 0 SHEET 2 AA2 9 LEU A 36 ASP A 45 -1 N THR A 37 O THR A 56 SHEET 3 AA2 9 GLY A 6 GLU A 14 -1 N MET A 10 O PHE A 38 SHEET 4 AA2 9 GLN B 124 LYS B 132 -1 O LYS B 131 N GLU A 9 SHEET 5 AA2 9 LYS B 114 CYS B 121 -1 N LEU B 119 O CYS B 126 SHEET 6 AA2 9 ARG B 104 GLU B 111 -1 N GLY B 105 O THR B 120 SHEET 7 AA2 9 VAL B 92 LYS B 98 -1 N CYS B 95 O TRP B 106 SHEET 8 AA2 9 HIS B 81 GLU B 89 -1 N THR B 87 O VAL B 94 SHEET 9 AA2 9 PHE B 70 TYR B 73 -1 N PHE B 70 O ALA B 84 SHEET 1 AA310 TYR A 60 THR A 65 0 SHEET 2 AA310 ASN C 48 HIS C 57 -1 O ALA C 53 N TYR A 60 SHEET 3 AA310 LEU C 36 ASP C 43 -1 N THR C 37 O THR C 56 SHEET 4 AA310 GLY C 6 GLU C 14 -1 N MET C 10 O PHE C 38 SHEET 5 AA310 GLN A 124 LYS A 132 -1 N VAL A 129 O GLU C 11 SHEET 6 AA310 LYS A 114 CYS A 121 -1 N LEU A 117 O GLN A 128 SHEET 7 AA310 ARG A 104 GLU A 111 -1 N TRP A 109 O TYR A 116 SHEET 8 AA310 VAL A 92 LYS A 98 -1 N CYS A 95 O TRP A 106 SHEET 9 AA310 HIS A 81 GLU A 89 -1 N THR A 87 O VAL A 94 SHEET 10 AA310 PHE A 70 TYR A 73 -1 N GLU A 72 O VAL A 82 SHEET 1 AA410 TYR C 60 THR C 65 0 SHEET 2 AA410 ASN B 48 THR B 54 -1 N PHE B 49 O PHE C 64 SHEET 3 AA410 THR B 39 ASP B 45 -1 N ASP B 43 O LYS B 50 SHEET 4 AA410 GLY B 6 GLU B 14 -1 N TRP B 8 O ASP B 40 SHEET 5 AA410 GLN C 124 LYS C 132 -1 O VAL C 129 N GLU B 11 SHEET 6 AA410 LYS C 114 CYS C 121 -1 N LEU C 115 O PHE C 130 SHEET 7 AA410 GLY C 105 GLU C 111 -1 N GLY C 105 O THR C 120 SHEET 8 AA410 VAL C 92 LYS C 98 -1 N LEU C 93 O LYS C 108 SHEET 9 AA410 ARG C 80 GLU C 89 -1 N THR C 87 O VAL C 94 SHEET 10 AA410 PHE C 70 THR C 74 -1 N GLU C 72 O VAL C 82 LINK NE2AHIS A 57 ZN ZN A 201 1555 1555 2.18 LINK NE2BHIS A 57 ZN ZN A 201 1555 1555 2.40 LINK NE2AHIS A 57 ZN ZN A 203 1555 1555 1.91 LINK NE2BHIS A 57 ZN ZN A 203 1555 1555 1.88 LINK ZN ZN A 201 NE2AHIS B 57 1555 1555 2.35 LINK ZN ZN A 201 NE2BHIS B 57 1555 1555 2.50 LINK ZN ZN A 201 NE2AHIS C 57 1555 1555 2.47 LINK ZN ZN A 201 NE2BHIS C 57 1555 1555 2.56 LINK ZN ZN A 203 NE2AHIS B 57 1555 1555 2.01 LINK ZN ZN A 203 NE2BHIS B 57 1555 1555 1.77 LINK ZN ZN A 203 NE2AHIS C 57 1555 1555 1.87 LINK ZN ZN A 203 NE2BHIS C 57 1555 1555 1.92 LINK O1 GOL B 201 ZN ZN C 201 1555 3454 1.97 LINK O2 GOL B 201 ZN ZN C 201 1555 3454 1.83 SITE 1 AC1 5 HIS A 57 ZN A 203 ZN A 204 HIS B 57 SITE 2 AC1 5 HIS C 57 SITE 1 AC2 4 HIS A 57 ZN A 201 HIS B 57 HIS C 57 SITE 1 AC3 5 ILE A 32 HIS A 57 ZN A 201 HIS B 57 SITE 2 AC3 5 ILE C 32 SITE 1 AC4 1 MET A 10 SITE 1 AC5 4 TYR A 60 GLU A 72 TRP A 106 LYS A 108 SITE 1 AC6 1 ASN A 13 SITE 1 AC7 6 PHE A 27 ALA A 28 ARG B 2 PHE B 27 SITE 2 AC7 6 GLN B 44 ZN C 201 SITE 1 AC8 7 MET B 10 GLU B 11 SER B 12 ASN B 13 SITE 2 AC8 7 LEU B 36 THR B 37 LEU B 58 SITE 1 AC9 1 GOL B 201 SITE 1 AD1 4 MET C 10 GLU C 11 THR C 37 LEU C 58 CRYST1 60.513 74.451 94.345 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010599 0.00000