HEADER LIGASE 28-APR-20 6WQ6 TITLE XANTHOMONAS CITRI METHIONYL-TRNA SYNTHETASE IN COMPLEX WITH METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHIONYL-TRNA SYNTHETASE,METRS; COMPND 5 EC: 6.1.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CITRI; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: METG, METS, XAC1386; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS SUBSTRATE, COMPLEX, TRNA, AMINOACYLATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.F.MERCALDI,C.E.BENEDETTI REVDAT 4 18-OCT-23 6WQ6 1 REMARK REVDAT 3 14-JUL-21 6WQ6 1 JRNL REVDAT 2 05-MAY-21 6WQ6 1 JRNL REVDAT 1 21-APR-21 6WQ6 0 JRNL AUTH G.F.MERCALDI,M.O.ANDRADE,J.L.ZANELLA,A.T.CORDEIRO, JRNL AUTH 2 C.E.BENEDETTI JRNL TITL MOLECULAR BASIS FOR DIARYLDIAMINE SELECTIVITY AND JRNL TITL 2 COMPETITION WITH TRNA IN A TYPE 2 METHIONYL-TRNA SYNTHETASE JRNL TITL 3 FROM A GRAM-NEGATIVE BACTERIUM. JRNL REF J.BIOL.CHEM. V. 296 00658 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33857480 JRNL DOI 10.1016/J.JBC.2021.100658 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 242 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.03000 REMARK 3 B22 (A**2) : -3.10000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4376 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3993 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5948 ; 1.862 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9226 ; 1.064 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 6.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;36.361 ;23.317 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 674 ;16.656 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.357 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 643 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4960 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 961 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6WQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 1.90500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 1PFY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 28 - 32 % PEG 4000, REMARK 280 0.2 M MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.57300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.62550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.81200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.62550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.57300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.81200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 GLY A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASP A 548 REMARK 465 THR A 549 REMARK 465 LEU A 550 REMARK 465 ALA A 551 REMARK 465 ALA A 552 REMARK 465 PRO A 553 REMARK 465 ALA A 554 REMARK 465 THR A 555 REMARK 465 PRO A 556 REMARK 465 ALA A 557 REMARK 465 THR A 558 REMARK 465 ALA A 559 REMARK 465 SER A 560 REMARK 465 LYS A 561 REMARK 465 PRO A 562 REMARK 465 ALA A 563 REMARK 465 PRO A 564 REMARK 465 ALA A 565 REMARK 465 LYS A 566 REMARK 465 ALA A 567 REMARK 465 ASP A 568 REMARK 465 ALA A 569 REMARK 465 LYS A 570 REMARK 465 PRO A 571 REMARK 465 ALA A 572 REMARK 465 ALA A 573 REMARK 465 ALA A 574 REMARK 465 ALA A 575 REMARK 465 ASN A 576 REMARK 465 PRO A 577 REMARK 465 GLN A 578 REMARK 465 SER A 579 REMARK 465 PRO A 580 REMARK 465 ILE A 581 REMARK 465 ALA A 582 REMARK 465 THR A 583 REMARK 465 PRO A 584 REMARK 465 GLY A 585 REMARK 465 PHE A 586 REMARK 465 ILE A 587 REMARK 465 GLY A 588 REMARK 465 MET A 589 REMARK 465 ASP A 590 REMARK 465 ASP A 591 REMARK 465 PHE A 592 REMARK 465 ALA A 593 REMARK 465 LYS A 594 REMARK 465 LEU A 595 REMARK 465 ASP A 596 REMARK 465 LEU A 597 REMARK 465 ARG A 598 REMARK 465 ILE A 599 REMARK 465 GLY A 600 REMARK 465 LYS A 601 REMARK 465 VAL A 602 REMARK 465 LEU A 603 REMARK 465 ALA A 604 REMARK 465 CYS A 605 REMARK 465 GLU A 606 REMARK 465 PHE A 607 REMARK 465 VAL A 608 REMARK 465 GLU A 609 REMARK 465 GLY A 610 REMARK 465 SER A 611 REMARK 465 ASP A 612 REMARK 465 LYS A 613 REMARK 465 LEU A 614 REMARK 465 LEU A 615 REMARK 465 ARG A 616 REMARK 465 PHE A 617 REMARK 465 GLU A 618 REMARK 465 LEU A 619 REMARK 465 ASP A 620 REMARK 465 ALA A 621 REMARK 465 GLY A 622 REMARK 465 GLU A 623 REMARK 465 LEU A 624 REMARK 465 GLY A 625 REMARK 465 THR A 626 REMARK 465 ARG A 627 REMARK 465 GLN A 628 REMARK 465 ILE A 629 REMARK 465 PHE A 630 REMARK 465 SER A 631 REMARK 465 GLY A 632 REMARK 465 ILE A 633 REMARK 465 ARG A 634 REMARK 465 ALA A 635 REMARK 465 SER A 636 REMARK 465 TYR A 637 REMARK 465 ARG A 638 REMARK 465 GLU A 639 REMARK 465 PRO A 640 REMARK 465 GLU A 641 REMARK 465 THR A 642 REMARK 465 LEU A 643 REMARK 465 VAL A 644 REMARK 465 GLY A 645 REMARK 465 ARG A 646 REMARK 465 SER A 647 REMARK 465 VAL A 648 REMARK 465 VAL A 649 REMARK 465 PHE A 650 REMARK 465 ILE A 651 REMARK 465 ALA A 652 REMARK 465 ASN A 653 REMARK 465 LEU A 654 REMARK 465 ALA A 655 REMARK 465 PRO A 656 REMARK 465 ARG A 657 REMARK 465 LYS A 658 REMARK 465 MET A 659 REMARK 465 ARG A 660 REMARK 465 PHE A 661 REMARK 465 GLY A 662 REMARK 465 ILE A 663 REMARK 465 SER A 664 REMARK 465 GLU A 665 REMARK 465 GLY A 666 REMARK 465 MET A 667 REMARK 465 ILE A 668 REMARK 465 LEU A 669 REMARK 465 SER A 670 REMARK 465 ALA A 671 REMARK 465 GLY A 672 REMARK 465 PHE A 673 REMARK 465 ASP A 674 REMARK 465 GLY A 675 REMARK 465 GLY A 676 REMARK 465 ALA A 677 REMARK 465 LEU A 678 REMARK 465 ALA A 679 REMARK 465 LEU A 680 REMARK 465 LEU A 681 REMARK 465 ASP A 682 REMARK 465 ALA A 683 REMARK 465 ASP A 684 REMARK 465 SER A 685 REMARK 465 GLY A 686 REMARK 465 ALA A 687 REMARK 465 GLN A 688 REMARK 465 PRO A 689 REMARK 465 GLY A 690 REMARK 465 MET A 691 REMARK 465 PRO A 692 REMARK 465 VAL A 693 REMARK 465 ARG A 694 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 804 O HOH A 1038 1.92 REMARK 500 OE1 GLU A 61 O HOH A 801 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 12 N PRO A 12 CA 0.194 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 PRO A 12 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 PRO A 12 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 MET A 340 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 379 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 433 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 435 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 435 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 441 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 441 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 540 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 72.55 -108.66 REMARK 500 ASP A 93 -158.20 -119.32 REMARK 500 LEU A 301 -63.56 -124.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 143 SG REMARK 620 2 CYS A 146 SG 113.5 REMARK 620 3 CYS A 156 SG 102.6 106.3 REMARK 620 4 CYS A 159 SG 109.9 110.4 114.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MET A 702 DBREF 6WQ6 A 1 694 UNP Q8PMP0 SYM_XANAC 1 694 SEQADV 6WQ6 MET A -16 UNP Q8PMP0 INITIATING METHIONINE SEQADV 6WQ6 GLY A -15 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 HIS A -14 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 HIS A -13 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 HIS A -12 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 HIS A -11 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 HIS A -10 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 HIS A -9 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 GLY A -8 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 GLU A -7 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 ASN A -6 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 LEU A -5 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 TYR A -4 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 PHE A -3 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 GLN A -2 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 GLY A -1 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQ6 SER A 0 UNP Q8PMP0 EXPRESSION TAG SEQRES 1 A 711 MET GLY HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR SEQRES 2 A 711 PHE GLN GLY SER MET THR ARG THR ALA LEU VAL THR THR SEQRES 3 A 711 ALA LEU PRO TYR ALA ASN GLY PRO LEU HIS LEU GLY HIS SEQRES 4 A 711 LEU VAL GLY TYR ILE GLN ALA ASP ILE TRP VAL ARG ALA SEQRES 5 A 711 ARG ARG LEU ARG GLY ASP LYS THR TRP PHE VAL CYS ALA SEQRES 6 A 711 ASP ASP THR HIS GLY THR PRO ILE MET LEU ALA ALA GLU SEQRES 7 A 711 LYS ALA GLY VAL THR PRO GLU ALA PHE ILE ALA ASN VAL SEQRES 8 A 711 GLN ALA SER HIS GLU ARG ASP PHE ALA ALA PHE GLY VAL SEQRES 9 A 711 THR PHE ASP HIS TYR ASP SER THR ASN SER PRO VAL ASN SEQRES 10 A 711 ARG GLU LEU THR GLU ALA PHE TYR ALA LYS LEU GLU ALA SEQRES 11 A 711 ALA GLY HIS ILE SER ARG ARG SER VAL ALA GLN PHE TYR SEQRES 12 A 711 ASP THR ALA LYS GLY MET PHE LEU PRO ASP ARG TYR ILE SEQRES 13 A 711 LYS GLY ILE CYS PRO ASN CYS GLY SER PRO ASP GLN TYR SEQRES 14 A 711 GLY ASP ASN CYS GLU VAL CYS GLY ALA THR TYR ALA PRO SEQRES 15 A 711 THR GLU LEU LYS GLU PRO LYS SER VAL ILE SER GLY ALA SEQRES 16 A 711 THR PRO GLU LEU ARG ASP SER GLU HIS PHE PHE PHE GLU SEQRES 17 A 711 VAL GLY HIS PHE ASP GLY PHE LEU ARG GLU TRP LEU ALA SEQRES 18 A 711 GLY ASP VAL ALA LEU PRO GLY VAL LYS ALA LYS LEU LYS SEQRES 19 A 711 GLU TRP LEU ASP ALA GLU GLY GLY LEU ARG ALA TRP ASP SEQRES 20 A 711 ILE SER ARG ASP ALA PRO TYR PHE GLY PHE GLN ILE PRO SEQRES 21 A 711 GLY GLN PRO GLY LYS TYR PHE TYR VAL TRP LEU ASP ALA SEQRES 22 A 711 PRO ILE GLY TYR LEU CYS SER PHE LYS THR LEU CYS ALA SEQRES 23 A 711 GLN MET GLY GLU ASN PHE GLU ALA HIS LEU VAL ALA GLY SEQRES 24 A 711 THR GLN THR GLU LEU HIS HIS PHE ILE GLY LYS ASP ILE SEQRES 25 A 711 VAL ASN PHE HIS GLY LEU PHE TRP PRO ALA VAL LEU HIS SEQRES 26 A 711 GLY THR GLY HIS ARG ALA PRO THR ARG LEU HIS VAL ASN SEQRES 27 A 711 GLY TYR LEU THR VAL ASP GLY ALA LYS MET SER LYS SER SEQRES 28 A 711 ARG GLY THR PHE VAL MET ALA ARG THR PHE LEU ASP VAL SEQRES 29 A 711 GLY LEU GLU PRO GLU ALA LEU ARG TYR TYR PHE ALA ALA SEQRES 30 A 711 LYS SER SER GLY GLY VAL ASP ASP LEU ASP LEU ASN LEU SEQRES 31 A 711 GLY ASP PHE ILE ALA ARG VAL ASN ALA ASP LEU VAL GLY SEQRES 32 A 711 LYS PHE VAL ASN LEU ALA SER ARG CYS ALA GLY PHE ILE SEQRES 33 A 711 GLY LYS ARG PHE ASP GLY LYS LEU ALA ASP ALA LEU PRO SEQRES 34 A 711 ASP ALA ALA GLN TYR ASP ARG PHE VAL ALA ALA LEU ALA SEQRES 35 A 711 PRO ILE ARG GLU ALA TYR GLU ARG ASN ASP ALA ALA SER SEQRES 36 A 711 ALA ILE ARG GLN THR MET ALA LEU ALA ASP GLU ALA ASN SEQRES 37 A 711 LYS TYR ILE ASP ASP THR LYS PRO TRP VAL ILE ALA LYS SEQRES 38 A 711 GLN ASP GLY ALA ASP ALA GLN LEU GLN SER VAL CYS THR SEQRES 39 A 711 GLN GLY LEU ASN LEU PHE ARG ILE LEU VAL ALA ALA LEU SEQRES 40 A 711 LYS PRO ILE LEU PRO ARG THR CYS ALA GLU ALA GLU ALA SEQRES 41 A 711 PHE LEU SER ALA PRO MET THR SER TRP GLU ASP VAL ILE SEQRES 42 A 711 GLY PRO LEU THR ALA HIS THR ILE GLN PRO TYR THR ALA SEQRES 43 A 711 LEU PHE THR ARG ILE ASP PRO LYS LEU ILE ASP ALA MET SEQRES 44 A 711 THR ASP ALA SER LYS ASP THR LEU ALA ALA PRO ALA THR SEQRES 45 A 711 PRO ALA THR ALA SER LYS PRO ALA PRO ALA LYS ALA ASP SEQRES 46 A 711 ALA LYS PRO ALA ALA ALA ALA ASN PRO GLN SER PRO ILE SEQRES 47 A 711 ALA THR PRO GLY PHE ILE GLY MET ASP ASP PHE ALA LYS SEQRES 48 A 711 LEU ASP LEU ARG ILE GLY LYS VAL LEU ALA CYS GLU PHE SEQRES 49 A 711 VAL GLU GLY SER ASP LYS LEU LEU ARG PHE GLU LEU ASP SEQRES 50 A 711 ALA GLY GLU LEU GLY THR ARG GLN ILE PHE SER GLY ILE SEQRES 51 A 711 ARG ALA SER TYR ARG GLU PRO GLU THR LEU VAL GLY ARG SEQRES 52 A 711 SER VAL VAL PHE ILE ALA ASN LEU ALA PRO ARG LYS MET SEQRES 53 A 711 ARG PHE GLY ILE SER GLU GLY MET ILE LEU SER ALA GLY SEQRES 54 A 711 PHE ASP GLY GLY ALA LEU ALA LEU LEU ASP ALA ASP SER SEQRES 55 A 711 GLY ALA GLN PRO GLY MET PRO VAL ARG HET ZN A 701 1 HET MET A 702 9 HETNAM ZN ZINC ION HETNAM MET METHIONINE FORMUL 2 ZN ZN 2+ FORMUL 3 MET C5 H11 N O2 S FORMUL 4 HOH *276(H2 O) HELIX 1 AA1 HIS A 19 ARG A 39 1 21 HELIX 2 AA2 GLY A 53 GLY A 64 1 12 HELIX 3 AA3 THR A 66 PHE A 85 1 20 HELIX 4 AA4 SER A 97 ALA A 114 1 18 HELIX 5 AA5 PRO A 135 ARG A 137 5 3 HELIX 6 AA6 ALA A 164 LEU A 168 5 5 HELIX 7 AA7 VAL A 192 HIS A 194 5 3 HELIX 8 AA8 PHE A 195 ALA A 204 1 10 HELIX 9 AA9 LEU A 209 ASP A 221 1 13 HELIX 10 AB1 TYR A 251 GLY A 272 1 22 HELIX 11 AB2 ASN A 274 VAL A 280 1 7 HELIX 12 AB3 ILE A 295 LEU A 301 1 7 HELIX 13 AB4 LEU A 301 THR A 310 1 10 HELIX 14 AB5 MET A 340 VAL A 347 1 8 HELIX 15 AB6 GLU A 350 LYS A 361 1 12 HELIX 16 AB7 ASN A 372 LEU A 384 1 13 HELIX 17 AB8 PHE A 388 ASP A 404 1 17 HELIX 18 AB9 ASP A 413 ARG A 433 1 21 HELIX 19 AC1 ASP A 435 LYS A 458 1 24 HELIX 20 AC2 LYS A 458 ALA A 463 1 6 HELIX 21 AC3 ALA A 468 LYS A 491 1 24 HELIX 22 AC4 LEU A 494 LEU A 505 1 12 HELIX 23 AC5 SER A 511 ILE A 516 5 6 HELIX 24 AC6 ASP A 535 SER A 546 1 12 SHEET 1 AA1 5 HIS A 91 SER A 94 0 SHEET 2 AA1 5 THR A 43 ASP A 49 1 N CYS A 47 O ASP A 93 SHEET 3 AA1 5 ALA A 5 THR A 9 1 N ALA A 5 O TRP A 44 SHEET 4 AA1 5 GLU A 286 GLY A 292 1 O PHE A 290 N THR A 8 SHEET 5 AA1 5 ARG A 317 ASN A 321 1 O HIS A 319 N ILE A 291 SHEET 1 AA2 4 MET A 132 PHE A 133 0 SHEET 2 AA2 4 ILE A 117 ASP A 127 -1 N ASP A 127 O MET A 132 SHEET 3 AA2 4 GLU A 181 PHE A 190 -1 O HIS A 187 N ARG A 120 SHEET 4 AA2 4 TRP A 229 ASP A 230 -1 O TRP A 229 N PHE A 190 SHEET 1 AA3 3 GLN A 151 TYR A 152 0 SHEET 2 AA3 3 ILE A 139 ILE A 142 -1 N GLY A 141 O GLN A 151 SHEET 3 AA3 3 LYS A 169 SER A 173 -1 O LYS A 169 N ILE A 142 SHEET 1 AA4 2 SER A 232 ASP A 234 0 SHEET 2 AA4 2 LYS A 248 PHE A 250 -1 O TYR A 249 N ARG A 233 SHEET 1 AA5 3 ALA A 329 LYS A 330 0 SHEET 2 AA5 3 LEU A 324 VAL A 326 -1 N VAL A 326 O ALA A 329 SHEET 3 AA5 3 LEU A 369 LEU A 371 1 O LEU A 371 N THR A 325 LINK SG CYS A 143 ZN ZN A 701 1555 1555 2.43 LINK SG CYS A 146 ZN ZN A 701 1555 1555 2.31 LINK SG CYS A 156 ZN ZN A 701 1555 1555 2.49 LINK SG CYS A 159 ZN ZN A 701 1555 1555 2.46 CISPEP 1 ALA A 235 PRO A 236 0 -0.91 SITE 1 AC1 4 CYS A 143 CYS A 146 CYS A 156 CYS A 159 SITE 1 AC2 8 LEU A 11 TYR A 13 ASP A 50 TRP A 253 SITE 2 AC2 8 PRO A 257 TYR A 260 ILE A 295 HOH A 932 CRYST1 77.146 83.624 95.251 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012962 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010499 0.00000