HEADER LIGASE 29-APR-20 6WQS TITLE XANTHOMONAS CITRI METHIONYL-TRNA SYNTHETASE IN COMPLEX WITH REP8839 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHIONYL-TRNA SYNTHETASE,METRS; COMPND 5 EC: 6.1.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CITRI; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: METG, METS, XAC1386; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BEDEROCIN, CITRUS CANKER, TRNA, AMINOACYLATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.F.MERCALDI,C.E.BENEDETTI REVDAT 4 18-OCT-23 6WQS 1 REMARK REVDAT 3 14-JUL-21 6WQS 1 JRNL REVDAT 2 05-MAY-21 6WQS 1 JRNL REVDAT 1 21-APR-21 6WQS 0 JRNL AUTH G.F.MERCALDI,M.O.ANDRADE,J.L.ZANELLA,A.T.CORDEIRO, JRNL AUTH 2 C.E.BENEDETTI JRNL TITL MOLECULAR BASIS FOR DIARYLDIAMINE SELECTIVITY AND JRNL TITL 2 COMPETITION WITH TRNA IN A TYPE 2 METHIONYL-TRNA SYNTHETASE JRNL TITL 3 FROM A GRAM-NEGATIVE BACTERIUM. JRNL REF J.BIOL.CHEM. V. 296 00658 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33857480 JRNL DOI 10.1016/J.JBC.2021.100658 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 40156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2882 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.27000 REMARK 3 B22 (A**2) : -4.27000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.268 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4385 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3996 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5960 ; 1.808 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9229 ; 1.082 ; 2.993 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 6.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;34.714 ;23.073 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;16.332 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 641 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4980 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 965 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6WQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 - 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42403 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 6WQ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, PEG3350, MGCL2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.58050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.91150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.20900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.91150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.58050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.20900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 GLU A -12 REMARK 465 ASN A -11 REMARK 465 LEU A -10 REMARK 465 TYR A -9 REMARK 465 PHE A -8 REMARK 465 GLN A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 MET A -4 REMARK 465 ALA A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASP A 548 REMARK 465 THR A 549 REMARK 465 LEU A 550 REMARK 465 ALA A 551 REMARK 465 ALA A 552 REMARK 465 PRO A 553 REMARK 465 ALA A 554 REMARK 465 THR A 555 REMARK 465 PRO A 556 REMARK 465 ALA A 557 REMARK 465 THR A 558 REMARK 465 ALA A 559 REMARK 465 SER A 560 REMARK 465 LYS A 561 REMARK 465 PRO A 562 REMARK 465 ALA A 563 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 394 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 533 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 -157.91 -121.46 REMARK 500 ASP A 255 -53.78 -135.65 REMARK 500 ASN A 274 79.09 -106.27 REMARK 500 PHE A 388 -71.37 -83.20 REMARK 500 SER A 506 51.37 36.69 REMARK 500 ALA A 507 59.61 -147.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 143 SG REMARK 620 2 CYS A 146 SG 112.4 REMARK 620 3 CYS A 156 SG 102.0 102.7 REMARK 620 4 CYS A 159 SG 105.7 114.1 119.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U7S A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WQ6 RELATED DB: PDB REMARK 900 RELATED ID: 6WQI RELATED DB: PDB DBREF 6WQS A 1 563 UNP Q8PMP0 SYM_XANAC 1 563 SEQADV 6WQS MET A -20 UNP Q8PMP0 INITIATING METHIONINE SEQADV 6WQS GLY A -19 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS HIS A -18 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS HIS A -17 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS HIS A -16 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS HIS A -15 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS HIS A -14 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS HIS A -13 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS GLU A -12 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS ASN A -11 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS LEU A -10 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS TYR A -9 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS PHE A -8 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS GLN A -7 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS GLY A -6 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS HIS A -5 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS MET A -4 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS ALA A -3 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS SER A -2 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS GLY A -1 UNP Q8PMP0 EXPRESSION TAG SEQADV 6WQS SER A 0 UNP Q8PMP0 EXPRESSION TAG SEQRES 1 A 584 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 584 GLN GLY HIS MET ALA SER GLY SER MET THR ARG THR ALA SEQRES 3 A 584 LEU VAL THR THR ALA LEU PRO TYR ALA ASN GLY PRO LEU SEQRES 4 A 584 HIS LEU GLY HIS LEU VAL GLY TYR ILE GLN ALA ASP ILE SEQRES 5 A 584 TRP VAL ARG ALA ARG ARG LEU ARG GLY ASP LYS THR TRP SEQRES 6 A 584 PHE VAL CYS ALA ASP ASP THR HIS GLY THR PRO ILE MET SEQRES 7 A 584 LEU ALA ALA GLU LYS ALA GLY VAL THR PRO GLU ALA PHE SEQRES 8 A 584 ILE ALA ASN VAL GLN ALA SER HIS GLU ARG ASP PHE ALA SEQRES 9 A 584 ALA PHE GLY VAL THR PHE ASP HIS TYR ASP SER THR ASN SEQRES 10 A 584 SER PRO VAL ASN ARG GLU LEU THR GLU ALA PHE TYR ALA SEQRES 11 A 584 LYS LEU GLU ALA ALA GLY HIS ILE SER ARG ARG SER VAL SEQRES 12 A 584 ALA GLN PHE TYR ASP THR ALA LYS GLY MET PHE LEU PRO SEQRES 13 A 584 ASP ARG TYR ILE LYS GLY ILE CYS PRO ASN CYS GLY SER SEQRES 14 A 584 PRO ASP GLN TYR GLY ASP ASN CYS GLU VAL CYS GLY ALA SEQRES 15 A 584 THR TYR ALA PRO THR GLU LEU LYS GLU PRO LYS SER VAL SEQRES 16 A 584 ILE SER GLY ALA THR PRO GLU LEU ARG ASP SER GLU HIS SEQRES 17 A 584 PHE PHE PHE GLU VAL GLY HIS PHE ASP GLY PHE LEU ARG SEQRES 18 A 584 GLU TRP LEU ALA GLY ASP VAL ALA LEU PRO GLY VAL LYS SEQRES 19 A 584 ALA LYS LEU LYS GLU TRP LEU ASP ALA GLU GLY GLY LEU SEQRES 20 A 584 ARG ALA TRP ASP ILE SER ARG ASP ALA PRO TYR PHE GLY SEQRES 21 A 584 PHE GLN ILE PRO GLY GLN PRO GLY LYS TYR PHE TYR VAL SEQRES 22 A 584 TRP LEU ASP ALA PRO ILE GLY TYR LEU CYS SER PHE LYS SEQRES 23 A 584 THR LEU CYS ALA GLN MET GLY GLU ASN PHE GLU ALA HIS SEQRES 24 A 584 LEU VAL ALA GLY THR GLN THR GLU LEU HIS HIS PHE ILE SEQRES 25 A 584 GLY LYS ASP ILE VAL ASN PHE HIS GLY LEU PHE TRP PRO SEQRES 26 A 584 ALA VAL LEU HIS GLY THR GLY HIS ARG ALA PRO THR ARG SEQRES 27 A 584 LEU HIS VAL ASN GLY TYR LEU THR VAL ASP GLY ALA LYS SEQRES 28 A 584 MET SER LYS SER ARG GLY THR PHE VAL MET ALA ARG THR SEQRES 29 A 584 PHE LEU ASP VAL GLY LEU GLU PRO GLU ALA LEU ARG TYR SEQRES 30 A 584 TYR PHE ALA ALA LYS SER SER GLY GLY VAL ASP ASP LEU SEQRES 31 A 584 ASP LEU ASN LEU GLY ASP PHE ILE ALA ARG VAL ASN ALA SEQRES 32 A 584 ASP LEU VAL GLY LYS PHE VAL ASN LEU ALA SER ARG CYS SEQRES 33 A 584 ALA GLY PHE ILE GLY LYS ARG PHE ASP GLY LYS LEU ALA SEQRES 34 A 584 ASP ALA LEU PRO ASP ALA ALA GLN TYR ASP ARG PHE VAL SEQRES 35 A 584 ALA ALA LEU ALA PRO ILE ARG GLU ALA TYR GLU ARG ASN SEQRES 36 A 584 ASP ALA ALA SER ALA ILE ARG GLN THR MET ALA LEU ALA SEQRES 37 A 584 ASP GLU ALA ASN LYS TYR ILE ASP ASP THR LYS PRO TRP SEQRES 38 A 584 VAL ILE ALA LYS GLN ASP GLY ALA ASP ALA GLN LEU GLN SEQRES 39 A 584 SER VAL CYS THR GLN GLY LEU ASN LEU PHE ARG ILE LEU SEQRES 40 A 584 VAL ALA ALA LEU LYS PRO ILE LEU PRO ARG THR CYS ALA SEQRES 41 A 584 GLU ALA GLU ALA PHE LEU SER ALA PRO MET THR SER TRP SEQRES 42 A 584 GLU ASP VAL ILE GLY PRO LEU THR ALA HIS THR ILE GLN SEQRES 43 A 584 PRO TYR THR ALA LEU PHE THR ARG ILE ASP PRO LYS LEU SEQRES 44 A 584 ILE ASP ALA MET THR ASP ALA SER LYS ASP THR LEU ALA SEQRES 45 A 584 ALA PRO ALA THR PRO ALA THR ALA SER LYS PRO ALA HET ZN A 601 1 HET U7S A 602 27 HETNAM ZN ZINC ION HETNAM U7S 2-{[3-({[4-BROMO-5-(1-FLUOROETHENYL)-3-METHYLTHIOPHEN- HETNAM 2 U7S 2-YL]METHYL}AMINO)PROPYL]AMINO}QUINOLIN-4(1H)-ONE FORMUL 2 ZN ZN 2+ FORMUL 3 U7S C20 H21 BR F N3 O S FORMUL 4 HOH *155(H2 O) HELIX 1 AA1 HIS A 19 ARG A 39 1 21 HELIX 2 AA2 GLY A 53 GLY A 64 1 12 HELIX 3 AA3 THR A 66 PHE A 85 1 20 HELIX 4 AA4 SER A 97 ALA A 114 1 18 HELIX 5 AA5 PRO A 135 ARG A 137 5 3 HELIX 6 AA6 ALA A 164 LEU A 168 5 5 HELIX 7 AA7 VAL A 192 HIS A 194 5 3 HELIX 8 AA8 PHE A 195 GLY A 205 1 11 HELIX 9 AA9 LEU A 209 ALA A 222 1 14 HELIX 10 AB1 VAL A 252 LEU A 254 5 3 HELIX 11 AB2 ASP A 255 GLY A 272 1 18 HELIX 12 AB3 ASN A 274 VAL A 280 1 7 HELIX 13 AB4 ILE A 295 LEU A 301 1 7 HELIX 14 AB5 LEU A 301 THR A 310 1 10 HELIX 15 AB6 MET A 340 VAL A 347 1 8 HELIX 16 AB7 GLU A 350 LYS A 361 1 12 HELIX 17 AB8 ASN A 372 LEU A 384 1 13 HELIX 18 AB9 LYS A 387 ASP A 404 1 18 HELIX 19 AC1 ASP A 413 ARG A 433 1 21 HELIX 20 AC2 ASP A 435 LYS A 458 1 24 HELIX 21 AC3 LYS A 458 ALA A 463 1 6 HELIX 22 AC4 ALA A 468 LYS A 491 1 24 HELIX 23 AC5 LEU A 494 LEU A 505 1 12 HELIX 24 AC6 SER A 511 ILE A 516 5 6 HELIX 25 AC7 ASP A 535 LYS A 547 1 13 SHEET 1 AA1 5 HIS A 91 SER A 94 0 SHEET 2 AA1 5 THR A 43 ASP A 49 1 N CYS A 47 O ASP A 93 SHEET 3 AA1 5 ALA A 5 THR A 9 1 N ALA A 5 O TRP A 44 SHEET 4 AA1 5 GLU A 286 GLY A 292 1 O HIS A 288 N LEU A 6 SHEET 5 AA1 5 ARG A 317 ASN A 321 1 O HIS A 319 N HIS A 289 SHEET 1 AA2 4 MET A 132 PHE A 133 0 SHEET 2 AA2 4 ILE A 117 ASP A 127 -1 N ASP A 127 O MET A 132 SHEET 3 AA2 4 GLU A 181 PHE A 190 -1 O SER A 185 N VAL A 122 SHEET 4 AA2 4 TRP A 229 ASP A 230 -1 O TRP A 229 N PHE A 190 SHEET 1 AA3 3 GLN A 151 TYR A 152 0 SHEET 2 AA3 3 ILE A 139 ILE A 142 -1 N GLY A 141 O GLN A 151 SHEET 3 AA3 3 LYS A 169 SER A 173 -1 O LYS A 169 N ILE A 142 SHEET 1 AA4 2 SER A 232 ASP A 234 0 SHEET 2 AA4 2 LYS A 248 PHE A 250 -1 O TYR A 249 N ARG A 233 SHEET 1 AA5 2 LEU A 324 VAL A 326 0 SHEET 2 AA5 2 LEU A 369 LEU A 371 1 O LEU A 371 N THR A 325 LINK SG CYS A 143 ZN ZN A 601 1555 1555 2.41 LINK SG CYS A 146 ZN ZN A 601 1555 1555 2.40 LINK SG CYS A 156 ZN ZN A 601 1555 1555 2.39 LINK SG CYS A 159 ZN ZN A 601 1555 1555 2.28 CISPEP 1 ALA A 235 PRO A 236 0 2.50 SITE 1 AC1 4 CYS A 143 CYS A 146 CYS A 156 CYS A 159 SITE 1 AC2 15 ALA A 10 LEU A 11 TYR A 13 ASP A 50 SITE 2 AC2 15 HIS A 52 GLY A 53 TYR A 237 PHE A 250 SITE 3 AC2 15 VAL A 252 ASP A 255 PRO A 257 TYR A 260 SITE 4 AC2 15 PHE A 298 HOH A 731 HOH A 734 CRYST1 77.161 84.418 95.823 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010436 0.00000