HEADER VIRAL PROTEIN/DNA 30-APR-20 6WS3 TITLE THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA ENDONUCLEASE WILD TITLE 2 TYPE BOUND TO DNA OLIGOMERS TG AND AGCA (FROM CLEAVED GTGAGCAGTG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X,POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*TP*G)-3'); COMPND 7 CHAIN: F, E; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: CLEAVED BY PAN09 BETWEEN G3 AND A4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 GENE: PA-X, PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS NUCLEASE, INFLUENZA, DNA OLIGOMER, CLEAVED, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,G.KUMAR,T.WEBB,S.W.WHITE REVDAT 3 18-OCT-23 6WS3 1 REMARK REVDAT 2 03-MAR-21 6WS3 1 JRNL REVDAT 1 03-FEB-21 6WS3 0 JRNL AUTH G.KUMAR,M.CUYPERS,R.R.WEBBY,T.R.WEBB,S.W.WHITE JRNL TITL STRUCTURAL INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF THE JRNL TITL 2 ENDONUCLEASE ACTIVITY OF THE INFLUENZA VIRUS CAP-SNATCHING JRNL TITL 3 MECHANISM. JRNL REF NUCLEIC ACIDS RES. V. 49 1609 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33469660 JRNL DOI 10.1093/NAR/GKAA1294 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 14011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.370 REMARK 3 FREE R VALUE TEST SET COUNT : 752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4000 - 3.7700 0.99 2793 173 0.1707 0.2036 REMARK 3 2 3.7700 - 2.9900 1.00 2701 135 0.1892 0.1920 REMARK 3 3 2.9900 - 2.6100 1.00 2627 170 0.2077 0.2413 REMARK 3 4 2.6100 - 2.3700 1.00 2629 147 0.2304 0.2401 REMARK 3 5 2.3700 - 2.2000 0.95 2509 127 0.2943 0.3689 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 289.6381 -34.9863 408.9045 REMARK 3 T TENSOR REMARK 3 T11: 0.5807 T22: 0.6423 REMARK 3 T33: 0.4304 T12: -0.0486 REMARK 3 T13: 0.0022 T23: -0.1626 REMARK 3 L TENSOR REMARK 3 L11: 4.3977 L22: 8.0364 REMARK 3 L33: 8.5813 L12: -1.1872 REMARK 3 L13: 2.3262 L23: -2.7903 REMARK 3 S TENSOR REMARK 3 S11: -0.1290 S12: 0.7349 S13: -0.0111 REMARK 3 S21: -1.1698 S22: 0.1050 S23: 0.4463 REMARK 3 S31: 0.4366 S32: -0.1720 S33: 0.0391 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 288.2255 -46.1944 424.2876 REMARK 3 T TENSOR REMARK 3 T11: 0.5271 T22: 0.6847 REMARK 3 T33: 0.3027 T12: 0.0630 REMARK 3 T13: 0.1154 T23: -0.0814 REMARK 3 L TENSOR REMARK 3 L11: 3.7128 L22: 8.9653 REMARK 3 L33: 1.3416 L12: -0.7041 REMARK 3 L13: -0.9224 L23: -0.1440 REMARK 3 S TENSOR REMARK 3 S11: -0.3757 S12: -0.4059 S13: 0.0406 REMARK 3 S21: 0.1602 S22: 0.3734 S23: 0.1723 REMARK 3 S31: 0.0318 S32: -0.5923 S33: -0.0182 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 291.1389 -30.2004 423.7004 REMARK 3 T TENSOR REMARK 3 T11: 0.3831 T22: 0.5357 REMARK 3 T33: 0.3652 T12: 0.1486 REMARK 3 T13: 0.0189 T23: -0.2208 REMARK 3 L TENSOR REMARK 3 L11: 2.0699 L22: 6.7253 REMARK 3 L33: 6.4764 L12: 0.5582 REMARK 3 L13: -0.1627 L23: -3.8073 REMARK 3 S TENSOR REMARK 3 S11: -0.3040 S12: -0.1083 S13: 0.0625 REMARK 3 S21: 0.5726 S22: 0.1859 S23: -0.0144 REMARK 3 S31: -0.5461 S32: -0.5729 S33: 0.0136 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 277.0953 -48.4579 415.9185 REMARK 3 T TENSOR REMARK 3 T11: 2.2226 T22: 1.7798 REMARK 3 T33: 3.1197 T12: 0.0264 REMARK 3 T13: -0.6530 T23: 0.7546 REMARK 3 L TENSOR REMARK 3 L11: 0.0926 L22: 3.7779 REMARK 3 L33: 0.1450 L12: -0.5715 REMARK 3 L13: 0.1147 L23: -0.7384 REMARK 3 S TENSOR REMARK 3 S11: 0.5191 S12: -0.1790 S13: -0.9449 REMARK 3 S21: -1.1775 S22: -0.8661 S23: -1.3937 REMARK 3 S31: -1.9096 S32: -1.6770 S33: 0.2441 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 3 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 279.9952 -33.5968 417.9412 REMARK 3 T TENSOR REMARK 3 T11: 1.5985 T22: 3.2848 REMARK 3 T33: 1.7112 T12: 0.6718 REMARK 3 T13: -0.1587 T23: -0.8488 REMARK 3 L TENSOR REMARK 3 L11: 7.6289 L22: 3.9105 REMARK 3 L33: 1.7894 L12: 4.7992 REMARK 3 L13: -1.5859 L23: -2.1381 REMARK 3 S TENSOR REMARK 3 S11: 1.1970 S12: 1.6463 S13: 0.6277 REMARK 3 S21: -0.2894 S22: 1.2420 S23: 0.2229 REMARK 3 S31: 0.6254 S32: -1.0134 S33: -1.6324 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14021 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 0.02M MGCL2, 0.02M MNCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.82300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.82300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.88650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.82300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.82300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.88650 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.82300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.82300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.88650 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.82300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.82300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.88650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.82300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.82300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.88650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.82300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.82300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.88650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.82300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.82300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.88650 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.82300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.82300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.88650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 GLU A 195 REMARK 465 ARG A 196 REMARK 465 DG F 0 REMARK 465 DA F 3 REMARK 465 DG F 4 REMARK 465 DC F 5 REMARK 465 DA F 6 REMARK 465 DG F 7 REMARK 465 DT F 8 REMARK 465 DG F 9 REMARK 465 DG E 0 REMARK 465 DT E 1 REMARK 465 DG E 2 REMARK 465 DG E 7 REMARK 465 DT E 8 REMARK 465 DG E 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 34 NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 LYS A 137 CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 470 DA E 6 O5' C5' C4' O4' C3' O3' C2' REMARK 470 DA E 6 C1' N9 C8 N7 C5 C6 N6 REMARK 470 DA E 6 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ARG A 124 OP1 DC E 5 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 7 OE1 GLN A 7 88811 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 162 -56.86 65.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WHM RELATED DB: PDB REMARK 900 PAN09 WITH OLIGO TTAGCATT DBREF1 6WS3 A 1 50 UNP A0A4P2TE19_9INFA DBREF2 6WS3 A A0A4P2TE19 1 50 DBREF 6WS3 A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 DBREF 6WS3 F 0 9 PDB 6WS3 6WS3 0 9 DBREF 6WS3 E 0 9 PDB 6WS3 6WS3 0 9 SEQADV 6WS3 MET A -19 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 GLY A -18 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 SER A -17 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 SER A -16 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 HIS A -15 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 HIS A -14 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 HIS A -13 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 HIS A -12 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 HIS A -11 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 HIS A -10 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 SER A -9 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 SER A -8 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 GLY A -7 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 LEU A -6 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 VAL A -5 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 PRO A -4 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 ARG A -3 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 GLY A -2 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 SER A -1 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 HIS A 0 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6WS3 GLY A 51 UNP A0A4P2TE1 LINKER SEQADV 6WS3 GLY A 52 UNP A0A4P2TE1 LINKER SEQADV 6WS3 SER A 53 UNP A0A4P2TE1 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG SEQRES 1 F 10 DG DT DG DA DG DC DA DG DT DG SEQRES 1 E 10 DG DT DG DA DG DC DA DG DT DG HET GOL A 201 6 HET GOL A 202 6 HET MN A 203 1 HET SO4 A 204 5 HET SO4 A 205 5 HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 MN MN 2+ FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *77(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 SITE 1 AC1 4 GLU A 154 TYR A 161 ARG A 168 HOH A 315 SITE 1 AC2 2 SER A -1 HIS A 0 SITE 1 AC3 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC3 5 DA E 3 SITE 1 AC4 5 GLU A 31 THR A 32 ASN A 33 LYS A 34 SITE 2 AC4 5 SER A 194 SITE 1 AC5 4 GLY A 52 SER A 53 ARG A 75 LYS A 113 CRYST1 89.646 89.646 133.773 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007475 0.00000