HEADER OXIDOREDUCTASE 01-MAY-20 6WTA TITLE STRUCTURE OF F420-H2 DEPENDENT OXIDOREDUCTASE (FDOR-A) MSMEG_2027 IN TITLE 2 COMPLEX WITH F420 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, Z; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS (STRAIN ATCC 700084 SOURCE 3 / MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 ATCC: 700084; SOURCE 7 GENE: MSMEG_2027; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PETMCSIII KEYWDS F420, COMPLEX, COFACTOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.JACKSON,J.P.ANTONEY REVDAT 4 14-MAY-25 6WTA 1 JRNL REVDAT 3 18-OCT-23 6WTA 1 REMARK REVDAT 2 16-NOV-22 6WTA 1 JRNL REVDAT 1 05-MAY-21 6WTA 0 JRNL AUTH J.ANTONEY,S.KAINRATH,J.G.DUBOWSKY,F.H.AHMED,S.W.KANG, JRNL AUTH 2 E.R.R.MACKIE,G.B.GRANADO,T.P.SOARES DA COSTA,C.J.JACKSON, JRNL AUTH 3 H.JANOVJAK JRNL TITL A F 420 -DEPENDENT SINGLE DOMAIN CHEMOGENETIC TOOL FOR JRNL TITL 2 PROTEIN DE-DIMERIZATION. JRNL REF J.MOL.BIOL. 69184 2025 JRNL REFN ESSN 1089-8638 JRNL PMID 40324743 JRNL DOI 10.1016/J.JMB.2025.169184 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ANTONEY,S.KAINRATH,F.H.AHMED,S.W.KANG,E.R.MACKIE, REMARK 1 AUTH 2 T.P.SOARES DA COSTA,C.J.JACKSON,H.JANOVJAK REMARK 1 TITL A F420-DEPENDENT SINGLE DOMAIN CHEMOGENETIC TOOL FOR PROTEIN REMARK 1 TITL 2 DE-DIMERIZATION REMARK 1 REF BIORXIV 2022 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2022.11.07.515376 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 17438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6800 - 3.0300 1.00 2924 155 0.1657 0.1819 REMARK 3 2 3.0300 - 2.4100 1.00 2791 138 0.1869 0.2631 REMARK 3 3 2.4100 - 2.1000 0.99 2738 157 0.2040 0.2374 REMARK 3 4 2.1000 - 1.9100 0.98 2670 152 0.2330 0.2856 REMARK 3 5 1.9100 - 1.7700 0.99 2686 156 0.2736 0.3054 REMARK 3 6 1.7700 - 1.6700 1.00 2722 149 0.3785 0.4085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1283 REMARK 3 ANGLE : 0.683 1751 REMARK 3 CHIRALITY : 0.046 186 REMARK 3 PLANARITY : 0.004 225 REMARK 3 DIHEDRAL : 20.681 470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'Z' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0656 111.4026 66.7058 REMARK 3 T TENSOR REMARK 3 T11: 0.6244 T22: 0.3121 REMARK 3 T33: 0.8615 T12: 0.0714 REMARK 3 T13: 0.0751 T23: -0.1984 REMARK 3 L TENSOR REMARK 3 L11: 0.1627 L22: 0.7830 REMARK 3 L33: 0.9944 L12: 0.3566 REMARK 3 L13: 0.1240 L23: 0.2418 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: -0.0783 S13: 0.1012 REMARK 3 S21: -0.1446 S22: 0.2369 S23: -0.2216 REMARK 3 S31: 0.3874 S32: 0.3042 S33: -0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4152 118.6687 69.8868 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.3590 REMARK 3 T33: 0.2507 T12: 0.0118 REMARK 3 T13: 0.0030 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 5.5780 L22: 3.6018 REMARK 3 L33: 2.1605 L12: 0.2773 REMARK 3 L13: -0.8342 L23: -2.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.2726 S13: -0.3382 REMARK 3 S21: 0.0422 S22: -0.0102 S23: -0.1252 REMARK 3 S31: 0.1101 S32: 0.4939 S33: -0.1082 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8737 124.4600 77.3376 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.1810 REMARK 3 T33: 0.1875 T12: 0.0208 REMARK 3 T13: 0.0078 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 5.1969 L22: 2.5693 REMARK 3 L33: 7.6699 L12: -0.1390 REMARK 3 L13: 1.3207 L23: -0.7388 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: -0.1036 S13: 0.0060 REMARK 3 S21: 0.1023 S22: 0.1202 S23: 0.0575 REMARK 3 S31: -0.0600 S32: -0.1178 S33: -0.1921 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6807 126.7552 76.0896 REMARK 3 T TENSOR REMARK 3 T11: 0.2356 T22: 0.4005 REMARK 3 T33: 0.2399 T12: 0.0788 REMARK 3 T13: 0.0319 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 5.0042 L22: 2.0366 REMARK 3 L33: 3.4080 L12: 1.2233 REMARK 3 L13: 0.0244 L23: 0.5624 REMARK 3 S TENSOR REMARK 3 S11: 0.0909 S12: 0.1118 S13: 0.1632 REMARK 3 S21: 0.0925 S22: 0.0134 S23: 0.3099 REMARK 3 S31: -0.2438 S32: -0.5766 S33: -0.0564 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000247324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953729987144 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20200131 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.11.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17596 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 32.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.17300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 1.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4Y9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.07 M CITRATE, 0.03 M BIS-TRIS REMARK 280 PROPANE, 16% PEG 3350, PH 3.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.68200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.68300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.51100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.68300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.68200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.51100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 SER Z 7 REMARK 465 PRO Z 8 REMARK 465 THR Z 9 REMARK 465 ASP Z 10 REMARK 465 TRP Z 11 REMARK 465 VAL Z 12 REMARK 465 ARG Z 13 REMARK 465 GLU Z 14 REMARK 465 GLN Z 15 REMARK 465 THR Z 16 REMARK 465 GLU Z 17 REMARK 465 ARG Z 18 REMARK 465 ILE Z 19 REMARK 465 LEU Z 20 REMARK 465 GLU Z 21 REMARK 465 GLN Z 22 REMARK 465 GLY Z 23 REMARK 465 THR Z 24 REMARK 465 THR Z 25 REMARK 465 ASP Z 26 REMARK 465 GLY Z 27 REMARK 465 VAL Z 28 REMARK 465 HIS Z 29 REMARK 465 VAL Z 30 REMARK 465 LEU Z 31 REMARK 465 ASP Z 32 REMARK 465 ARG Z 33 REMARK 465 PRO Z 34 REMARK 465 ILE Z 35 REMARK 465 VAL Z 36 REMARK 465 LEU Z 37 REMARK 465 PHE Z 38 REMARK 465 THR Z 39 REMARK 465 THR Z 40 REMARK 465 THR Z 41 REMARK 465 GLY Z 42 REMARK 465 ALA Z 43 REMARK 465 LYS Z 44 REMARK 465 SER Z 45 REMARK 465 GLY Z 46 REMARK 465 LYS Z 47 REMARK 465 LYS Z 48 REMARK 465 ARG Z 49 REMARK 465 TYR Z 50 REMARK 465 VAL Z 51 REMARK 465 PRO Z 52 REMARK 465 LEU Z 53 REMARK 465 MET Z 54 REMARK 465 ARG Z 55 REMARK 465 VAL Z 56 REMARK 465 GLU Z 57 REMARK 465 GLU Z 58 REMARK 465 ASN Z 59 REMARK 465 GLY Z 60 REMARK 465 LYS Z 61 REMARK 465 TYR Z 62 REMARK 465 ALA Z 63 REMARK 465 MET Z 64 REMARK 465 VAL Z 65 REMARK 465 ALA Z 66 REMARK 465 SER Z 67 REMARK 465 LYS Z 68 REMARK 465 GLY Z 69 REMARK 465 GLY Z 70 REMARK 465 ASP Z 71 REMARK 465 PRO Z 72 REMARK 465 LYS Z 73 REMARK 465 HIS Z 74 REMARK 465 PRO Z 75 REMARK 465 SER Z 76 REMARK 465 TRP Z 77 REMARK 465 TYR Z 78 REMARK 465 PHE Z 79 REMARK 465 ASN Z 80 REMARK 465 VAL Z 81 REMARK 465 LYS Z 82 REMARK 465 ALA Z 83 REMARK 465 ASN Z 84 REMARK 465 PRO Z 85 REMARK 465 THR Z 86 REMARK 465 VAL Z 87 REMARK 465 SER Z 88 REMARK 465 VAL Z 89 REMARK 465 GLN Z 90 REMARK 465 ASP Z 91 REMARK 465 GLY Z 92 REMARK 465 ASP Z 93 REMARK 465 LYS Z 94 REMARK 465 VAL Z 95 REMARK 465 LEU Z 96 REMARK 465 PRO Z 97 REMARK 465 ASP Z 98 REMARK 465 ARG Z 99 REMARK 465 THR Z 100 REMARK 465 ALA Z 101 REMARK 465 ARG Z 102 REMARK 465 GLU Z 103 REMARK 465 LEU Z 104 REMARK 465 GLU Z 105 REMARK 465 GLY Z 106 REMARK 465 GLU Z 107 REMARK 465 GLU Z 108 REMARK 465 ARG Z 109 REMARK 465 GLU Z 110 REMARK 465 HIS Z 111 REMARK 465 TRP Z 112 REMARK 465 TRP Z 113 REMARK 465 LYS Z 114 REMARK 465 LEU Z 115 REMARK 465 ALA Z 116 REMARK 465 VAL Z 117 REMARK 465 GLU Z 118 REMARK 465 ALA Z 119 REMARK 465 TYR Z 120 REMARK 465 PRO Z 121 REMARK 465 PRO Z 122 REMARK 465 TYR Z 123 REMARK 465 ALA Z 124 REMARK 465 GLU Z 125 REMARK 465 TYR Z 126 REMARK 465 GLN Z 127 REMARK 465 THR Z 128 REMARK 465 LYS Z 129 REMARK 465 THR Z 130 REMARK 465 ASP Z 131 REMARK 465 ARG Z 132 REMARK 465 LEU Z 133 REMARK 465 ILE Z 134 REMARK 465 PRO Z 135 REMARK 465 VAL Z 136 REMARK 465 PHE Z 137 REMARK 465 ILE Z 138 REMARK 465 VAL Z 139 REMARK 465 GLU Z 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 60 O HOH A 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: COENZYME F420-4 REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 UBM A 201 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 6J2 GLU GLU GLU GLU REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UBM A 201 DBREF 6WTA A 1 140 UNP A0QU01 A0QU01_MYCS2 1 140 DBREF 6WTA Z 1 140 UNP A0QU01 A0QU01_MYCS2 1 140 SEQRES 1 A 140 MET THR ASP ALA GLU LEU SER PRO THR ASP TRP VAL ARG SEQRES 2 A 140 GLU GLN THR GLU ARG ILE LEU GLU GLN GLY THR THR ASP SEQRES 3 A 140 GLY VAL HIS VAL LEU ASP ARG PRO ILE VAL LEU PHE THR SEQRES 4 A 140 THR THR GLY ALA LYS SER GLY LYS LYS ARG TYR VAL PRO SEQRES 5 A 140 LEU MET ARG VAL GLU GLU ASN GLY LYS TYR ALA MET VAL SEQRES 6 A 140 ALA SER LYS GLY GLY ASP PRO LYS HIS PRO SER TRP TYR SEQRES 7 A 140 PHE ASN VAL LYS ALA ASN PRO THR VAL SER VAL GLN ASP SEQRES 8 A 140 GLY ASP LYS VAL LEU PRO ASP ARG THR ALA ARG GLU LEU SEQRES 9 A 140 GLU GLY GLU GLU ARG GLU HIS TRP TRP LYS LEU ALA VAL SEQRES 10 A 140 GLU ALA TYR PRO PRO TYR ALA GLU TYR GLN THR LYS THR SEQRES 11 A 140 ASP ARG LEU ILE PRO VAL PHE ILE VAL GLU SEQRES 1 Z 140 MET THR ASP ALA GLU LEU SER PRO THR ASP TRP VAL ARG SEQRES 2 Z 140 GLU GLN THR GLU ARG ILE LEU GLU GLN GLY THR THR ASP SEQRES 3 Z 140 GLY VAL HIS VAL LEU ASP ARG PRO ILE VAL LEU PHE THR SEQRES 4 Z 140 THR THR GLY ALA LYS SER GLY LYS LYS ARG TYR VAL PRO SEQRES 5 Z 140 LEU MET ARG VAL GLU GLU ASN GLY LYS TYR ALA MET VAL SEQRES 6 Z 140 ALA SER LYS GLY GLY ASP PRO LYS HIS PRO SER TRP TYR SEQRES 7 Z 140 PHE ASN VAL LYS ALA ASN PRO THR VAL SER VAL GLN ASP SEQRES 8 Z 140 GLY ASP LYS VAL LEU PRO ASP ARG THR ALA ARG GLU LEU SEQRES 9 Z 140 GLU GLY GLU GLU ARG GLU HIS TRP TRP LYS LEU ALA VAL SEQRES 10 Z 140 GLU ALA TYR PRO PRO TYR ALA GLU TYR GLN THR LYS THR SEQRES 11 Z 140 ASP ARG LEU ILE PRO VAL PHE ILE VAL GLU HET UBM A 201 114 HETNAM UBM COENZYME F420-4 HETSYN UBM (2~{S})-2-[[(4~{S})-5-OXIDANYL-5-OXIDANYLIDENE-4- HETSYN 2 UBM [[(4~{S})-5-OXIDANYL-5-OXIDANYLIDENE-4-[[(4~{S})-5- HETSYN 3 UBM OXIDANYL-5-OXIDANYL IDENE-4-[[(2~{S})-2-[OXIDANYL- HETSYN 4 UBM [(2~{R},3~{S},4~{S})-2,3,4-TRIS(OXIDANYL)-5-[8- HETSYN 5 UBM OXIDANYL-2,4-BIS(OXIDANYLIDENE)-1~{H}-PYRIM IDO[4,5- HETSYN 6 UBM B]QUINOLIN-10- HETSYN 7 UBM YL]PENTOXY]PHOSPHORYL]OXYPROPANOYL]AMINO]PENTANOYL]AMI HETSYN 8 UBM NO]PENTANOYL]AMINO]PENTANOYL]AMINO]PENTANEDI OIC ACID FORMUL 3 UBM C39 H50 N7 O24 P FORMUL 4 HOH *87(H2 O) HELIX 1 AA1 THR A 9 GLY A 23 1 15 HELIX 2 AA2 PRO A 75 ASN A 84 1 10 HELIX 3 AA3 GLU A 105 TYR A 120 1 16 HELIX 4 AA4 PRO A 121 THR A 128 1 8 SHEET 1 AA1 3 HIS A 29 VAL A 30 0 SHEET 2 AA1 3 ARG A 33 THR A 41 -1 O ARG A 33 N VAL A 30 SHEET 3 AA1 3 LYS A 48 MET A 54 -1 O VAL A 51 N PHE A 38 SHEET 1 AA2 7 HIS A 29 VAL A 30 0 SHEET 2 AA2 7 ARG A 33 THR A 41 -1 O ARG A 33 N VAL A 30 SHEET 3 AA2 7 THR A 86 ASP A 91 -1 O GLN A 90 N LEU A 37 SHEET 4 AA2 7 LYS A 94 GLU A 103 -1 O ARG A 99 N VAL A 87 SHEET 5 AA2 7 VAL A 136 GLU A 140 -1 O ILE A 138 N ARG A 102 SHEET 6 AA2 7 LYS A 61 VAL A 65 -1 N TYR A 62 O VAL A 139 SHEET 7 AA2 7 GLU A 57 GLU A 58 -1 N GLU A 58 O LYS A 61 SITE 1 AC1 33 PRO A 8 THR A 9 TRP A 11 VAL A 12 SITE 2 AC1 33 GLN A 15 VAL A 30 GLY A 42 ALA A 43 SITE 3 AC1 33 LYS A 44 SER A 45 ARG A 49 PRO A 52 SITE 4 AC1 33 LEU A 53 MET A 54 VAL A 65 SER A 67 SITE 5 AC1 33 LYS A 68 HIS A 74 PRO A 75 SER A 76 SITE 6 AC1 33 TRP A 77 PHE A 79 ASN A 80 TYR A 123 SITE 7 AC1 33 HOH A 304 HOH A 305 HOH A 309 HOH A 313 SITE 8 AC1 33 HOH A 319 HOH A 334 HOH A 344 HOH A 345 SITE 9 AC1 33 HOH A 354 CRYST1 35.364 63.022 65.366 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028277 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015298 0.00000 CONECT 2318 2327 2359 2366 CONECT 2319 2320 2324 2389 CONECT 2320 2319 2321 2390 CONECT 2321 2320 2322 2328 CONECT 2322 2321 2323 2357 CONECT 2323 2322 2324 2391 CONECT 2324 2319 2323 2364 CONECT 2325 2327 2357 2358 CONECT 2326 2358 2359 2365 CONECT 2327 2318 2325 2328 CONECT 2328 2321 2327 2392 CONECT 2329 2330 2357 2393 2394 CONECT 2330 2329 2331 2367 2395 CONECT 2331 2330 2332 2368 2396 CONECT 2332 2331 2333 2369 2397 CONECT 2333 2332 2370 2398 2399 CONECT 2334 2341 2400 2401 2402 CONECT 2335 2336 2373 2374 CONECT 2336 2335 2337 2360 2403 CONECT 2337 2336 2338 2404 2405 CONECT 2338 2337 2339 2406 2407 CONECT 2339 2338 2361 2376 CONECT 2340 2341 2360 2375 CONECT 2341 2334 2340 2377 2408 CONECT 2342 2343 2378 2379 CONECT 2343 2342 2344 2361 2409 CONECT 2344 2343 2345 2410 2411 CONECT 2345 2344 2346 2412 2413 CONECT 2346 2345 2362 2380 CONECT 2347 2348 2381 2382 CONECT 2348 2347 2349 2362 2414 CONECT 2349 2348 2350 2415 2416 CONECT 2350 2349 2351 2417 2418 CONECT 2351 2350 2363 2383 CONECT 2352 2353 2384 2385 CONECT 2353 2352 2354 2363 2419 CONECT 2354 2353 2355 2420 2421 CONECT 2355 2354 2356 2422 2423 CONECT 2356 2355 2386 2387 CONECT 2357 2322 2325 2329 CONECT 2358 2325 2326 CONECT 2359 2318 2326 CONECT 2360 2336 2340 2424 CONECT 2361 2339 2343 2425 CONECT 2362 2346 2348 2426 CONECT 2363 2351 2353 2427 CONECT 2364 2324 2428 CONECT 2365 2326 CONECT 2366 2318 CONECT 2367 2330 2429 CONECT 2368 2331 2430 CONECT 2369 2332 2431 CONECT 2370 2333 2388 CONECT 2371 2388 CONECT 2372 2388 CONECT 2373 2335 CONECT 2374 2335 CONECT 2375 2340 CONECT 2376 2339 CONECT 2377 2341 2388 CONECT 2378 2342 CONECT 2379 2342 CONECT 2380 2346 CONECT 2381 2347 CONECT 2382 2347 CONECT 2383 2351 CONECT 2384 2352 CONECT 2385 2352 CONECT 2386 2356 CONECT 2387 2356 CONECT 2388 2370 2371 2372 2377 CONECT 2389 2319 CONECT 2390 2320 CONECT 2391 2323 CONECT 2392 2328 CONECT 2393 2329 CONECT 2394 2329 CONECT 2395 2330 CONECT 2396 2331 CONECT 2397 2332 CONECT 2398 2333 CONECT 2399 2333 CONECT 2400 2334 CONECT 2401 2334 CONECT 2402 2334 CONECT 2403 2336 CONECT 2404 2337 CONECT 2405 2337 CONECT 2406 2338 CONECT 2407 2338 CONECT 2408 2341 CONECT 2409 2343 CONECT 2410 2344 CONECT 2411 2344 CONECT 2412 2345 CONECT 2413 2345 CONECT 2414 2348 CONECT 2415 2349 CONECT 2416 2349 CONECT 2417 2350 CONECT 2418 2350 CONECT 2419 2353 CONECT 2420 2354 CONECT 2421 2354 CONECT 2422 2355 CONECT 2423 2355 CONECT 2424 2360 CONECT 2425 2361 CONECT 2426 2362 CONECT 2427 2363 CONECT 2428 2364 CONECT 2429 2367 CONECT 2430 2368 CONECT 2431 2369 MASTER 444 0 1 4 10 0 9 6 1310 2 114 22 END