HEADER HYDROLASE 04-MAY-20 6WUF TITLE CRYSTAL STRUCTURE OF MOUSE DXO IN COMPLEX WITH 3'-FADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECAPPING AND EXORIBONUCLEASE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DXO,DOM-3 HOMOLOG Z; COMPND 5 EC: 3.1.13.-,3.6.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DXO, DOM3Z, NG6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FAD, 3'-FADP, RNA, CAP, DECAPPING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.DOAMEKPOR,L.TONG REVDAT 3 18-OCT-23 6WUF 1 REMARK REVDAT 2 24-JUN-20 6WUF 1 JRNL REVDAT 1 20-MAY-20 6WUF 0 JRNL AUTH S.K.DOAMEKPOR,E.GRUDZIEN-NOGALSKA,A.MLYNARSKA-CIESLAK, JRNL AUTH 2 J.KOWALSKA,M.KILEDJIAN,L.TONG JRNL TITL DXO/RAI1 ENZYMES REMOVE 5'-END FAD AND DEPHOSPHO-COA CAPS ON JRNL TITL 2 RNAS. JRNL REF NUCLEIC ACIDS RES. V. 48 6136 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32374864 JRNL DOI 10.1093/NAR/GKAA297 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 54743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.660 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8900 - 3.8600 0.98 3825 140 0.1609 0.1756 REMARK 3 2 3.8600 - 3.0600 1.00 3823 149 0.1568 0.1830 REMARK 3 3 3.0600 - 2.6800 1.00 3810 146 0.1753 0.2323 REMARK 3 4 2.6800 - 2.4300 0.99 3776 142 0.1930 0.2454 REMARK 3 5 2.4300 - 2.2600 0.99 3761 151 0.1976 0.2431 REMARK 3 6 2.2600 - 2.1200 0.99 3792 147 0.2320 0.3063 REMARK 3 7 2.1200 - 2.0200 0.99 3759 138 0.2464 0.2649 REMARK 3 8 2.0200 - 1.9300 0.99 3773 137 0.2571 0.2571 REMARK 3 9 1.9300 - 1.8600 0.99 3775 140 0.2616 0.2743 REMARK 3 10 1.8600 - 1.7900 0.99 3735 147 0.2533 0.2850 REMARK 3 11 1.7900 - 1.7400 0.98 3743 143 0.2725 0.2785 REMARK 3 12 1.7400 - 1.6900 0.99 3725 144 0.2744 0.3393 REMARK 3 13 1.6900 - 1.6400 0.99 3794 142 0.2726 0.3119 REMARK 3 14 1.6400 - 1.6000 0.97 3651 135 0.2766 0.2941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3079 REMARK 3 ANGLE : 0.898 4214 REMARK 3 CHIRALITY : 0.053 419 REMARK 3 PLANARITY : 0.007 551 REMARK 3 DIHEDRAL : 18.972 427 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000246567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54771 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 2.351 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.23 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4J7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% (W/V) PEG3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.93850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 THR A 13 REMARK 465 GLU A 14 REMARK 465 VAL A 15 REMARK 465 GLU A 16 REMARK 465 LYS A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 ASN A 20 REMARK 465 LYS A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ARG A 24 REMARK 465 ALA A 25 REMARK 465 VAL A 26 REMARK 465 ASP A 385 REMARK 465 LEU A 386 REMARK 465 PRO A 387 REMARK 465 PRO A 388 REMARK 465 LEU A 389 REMARK 465 SER A 390 REMARK 465 LYS A 391 REMARK 465 THR A 392 REMARK 465 PRO A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 LYS A 396 REMARK 465 ASP A 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH A 645 1.76 REMARK 500 O HOH A 819 O HOH A 859 1.84 REMARK 500 O HOH A 710 O HOH A 811 1.87 REMARK 500 OG SER A 192 O HOH A 501 1.87 REMARK 500 O HOH A 596 O HOH A 775 1.90 REMARK 500 NZ LYS A 273 O HOH A 502 1.94 REMARK 500 O HOH A 704 O HOH A 831 1.96 REMARK 500 OE1 GLN A 253 O HOH A 503 1.99 REMARK 500 O HOH A 834 O HOH A 835 2.00 REMARK 500 NZ LYS A 258 O HOH A 504 2.02 REMARK 500 O ARG A 294 O HOH A 504 2.06 REMARK 500 O HOH A 649 O HOH A 833 2.07 REMARK 500 NE2 GLN A 253 O HOH A 505 2.09 REMARK 500 O HOH A 548 O HOH A 789 2.13 REMARK 500 O HOH A 692 O HOH A 835 2.14 REMARK 500 O HOH A 837 O HOH A 838 2.16 REMARK 500 O HOH A 639 O HOH A 838 2.17 REMARK 500 ND2 ASN A 226 O HOH A 506 2.17 REMARK 500 O HOH A 587 O HOH A 600 2.19 REMARK 500 OE2 GLU A 147 O HOH A 507 2.19 REMARK 500 O HOH A 578 O HOH A 829 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 643 O HOH A 849 1455 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 57.34 -153.10 REMARK 500 ARG A 102 -125.72 44.17 REMARK 500 ASP A 346 112.48 -172.92 REMARK 500 ASP A 368 -149.87 60.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UBG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 DBREF 6WUF A 1 397 UNP O70348 DXO_MOUSE 1 397 SEQADV 6WUF MET A -19 UNP O70348 INITIATING METHIONINE SEQADV 6WUF GLY A -18 UNP O70348 EXPRESSION TAG SEQADV 6WUF SER A -17 UNP O70348 EXPRESSION TAG SEQADV 6WUF SER A -16 UNP O70348 EXPRESSION TAG SEQADV 6WUF HIS A -15 UNP O70348 EXPRESSION TAG SEQADV 6WUF HIS A -14 UNP O70348 EXPRESSION TAG SEQADV 6WUF HIS A -13 UNP O70348 EXPRESSION TAG SEQADV 6WUF HIS A -12 UNP O70348 EXPRESSION TAG SEQADV 6WUF HIS A -11 UNP O70348 EXPRESSION TAG SEQADV 6WUF HIS A -10 UNP O70348 EXPRESSION TAG SEQADV 6WUF SER A -9 UNP O70348 EXPRESSION TAG SEQADV 6WUF SER A -8 UNP O70348 EXPRESSION TAG SEQADV 6WUF GLY A -7 UNP O70348 EXPRESSION TAG SEQADV 6WUF LEU A -6 UNP O70348 EXPRESSION TAG SEQADV 6WUF VAL A -5 UNP O70348 EXPRESSION TAG SEQADV 6WUF PRO A -4 UNP O70348 EXPRESSION TAG SEQADV 6WUF ARG A -3 UNP O70348 EXPRESSION TAG SEQADV 6WUF GLY A -2 UNP O70348 EXPRESSION TAG SEQADV 6WUF SER A -1 UNP O70348 EXPRESSION TAG SEQADV 6WUF HIS A 0 UNP O70348 EXPRESSION TAG SEQADV 6WUF SER A 192 UNP O70348 GLU 192 ENGINEERED MUTATION SEQADV 6WUF GLN A 234 UNP O70348 GLU 234 ENGINEERED MUTATION SEQADV 6WUF GLN A 253 UNP O70348 GLU 253 ENGINEERED MUTATION SEQRES 1 A 417 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 417 LEU VAL PRO ARG GLY SER HIS MET GLU PRO ARG GLY THR SEQRES 3 A 417 LYS ARG LYS ALA GLU LYS THR GLU VAL GLU LYS PRO LEU SEQRES 4 A 417 ASN LYS LEU PRO ARG ALA VAL PRO SER LEU ARG THR GLN SEQRES 5 A 417 PRO SER LEU TYR SER GLY PRO PHE PRO PHE TYR ARG ARG SEQRES 6 A 417 PRO SER GLU LEU GLY CYS PHE SER LEU ASP ALA GLN ARG SEQRES 7 A 417 GLN TYR HIS GLY ASP ALA ARG ALA LEU ARG TYR TYR SER SEQRES 8 A 417 PRO PRO PRO ILE ASN GLY PRO GLY PRO ASP PHE ASP LEU SEQRES 9 A 417 ARG ASP GLY TYR PRO ASP ARG TYR GLN PRO ARG ASP GLU SEQRES 10 A 417 GLU VAL GLN GLU ARG LEU ASP HIS LEU LEU ARG TRP VAL SEQRES 11 A 417 LEU GLU HIS ARG ASN GLN LEU GLU GLY GLY PRO GLY TRP SEQRES 12 A 417 LEU ALA GLY ALA THR VAL THR TRP ARG GLY HIS LEU THR SEQRES 13 A 417 LYS LEU LEU THR THR PRO TYR GLU ARG GLN GLU GLY TRP SEQRES 14 A 417 GLN LEU ALA ALA SER ARG PHE GLN GLY THR LEU TYR LEU SEQRES 15 A 417 SER GLU VAL GLU THR PRO ALA ALA ARG ALA GLN ARG LEU SEQRES 16 A 417 ALA ARG PRO PRO LEU LEU ARG GLU LEU MET TYR MET GLY SEQRES 17 A 417 TYR LYS PHE SER GLN TYR MET CYS ALA ASP LYS PRO GLY SEQRES 18 A 417 GLY SER PRO ASP PRO SER GLY GLU VAL ASN THR ASN VAL SEQRES 19 A 417 ALA TYR CYS SER VAL LEU ARG SER ARG LEU GLY ASN HIS SEQRES 20 A 417 PRO LEU LEU PHE SER GLY GLN VAL ASP CYS LEU ASN PRO SEQRES 21 A 417 GLN ALA PRO CYS THR GLN PRO PRO SER CYS TYR VAL GLN SEQRES 22 A 417 LEU LYS THR SER LYS GLU MET HIS SER PRO GLY GLN TRP SEQRES 23 A 417 ARG SER PHE TYR ARG HIS LYS LEU LEU LYS TRP TRP ALA SEQRES 24 A 417 GLN SER PHE LEU PRO GLY VAL PRO HIS VAL VAL ALA GLY SEQRES 25 A 417 PHE ARG ASN PRO GLU GLY PHE VAL CYS SER LEU LYS THR SEQRES 26 A 417 PHE PRO THR MET GLU MET PHE GLU ASN VAL ARG ASN ASP SEQRES 27 A 417 ARG GLU GLY TRP ASN PRO SER VAL CYS MET ASN PHE CYS SEQRES 28 A 417 ALA ALA PHE LEU SER PHE ALA GLN SER THR VAL VAL GLN SEQRES 29 A 417 ASP ASP PRO ARG LEU VAL HIS LEU PHE SER TRP GLU PRO SEQRES 30 A 417 GLY GLY PRO VAL THR VAL SER VAL HIS ARG ASP ALA PRO SEQRES 31 A 417 TYR ALA PHE LEU PRO SER TRP TYR VAL GLU THR MET THR SEQRES 32 A 417 GLN ASP LEU PRO PRO LEU SER LYS THR PRO SER PRO LYS SEQRES 33 A 417 ASP HET UBG A 401 57 HET EDO A 402 10 HETNAM UBG [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3- HETNAM 2 UBG (PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL (2R,3S,4S)- HETNAM 3 UBG 5-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN- HETNAM 4 UBG 10(2H)-YL)-2,3,4-TRIHYDROXYPENTYL DIHYDROGEN HETNAM 5 UBG DIPHOSPHATE (NON-PREFERRED NAME) HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 UBG C27 H34 N9 O18 P3 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *372(H2 O) HELIX 1 AA1 GLN A 32 SER A 37 5 6 HELIX 2 AA2 LEU A 103 ARG A 114 1 12 HELIX 3 AA3 ASN A 115 LEU A 117 5 3 HELIX 4 AA4 TRP A 123 GLY A 126 5 4 HELIX 5 AA5 ARG A 132 THR A 141 1 10 HELIX 6 AA6 PRO A 142 GLU A 144 5 3 HELIX 7 AA7 THR A 167 ALA A 176 1 10 HELIX 8 AA8 PRO A 178 MET A 195 1 18 HELIX 9 AA9 SER A 262 LEU A 283 1 22 HELIX 10 AB1 MET A 309 VAL A 315 5 7 HELIX 11 AB2 ASN A 323 VAL A 342 1 20 HELIX 12 AB3 PRO A 375 GLN A 384 1 10 SHEET 1 AA1 9 TYR A 60 HIS A 61 0 SHEET 2 AA1 9 SER A 47 LEU A 54 -1 N SER A 53 O HIS A 61 SHEET 3 AA1 9 ALA A 215 LEU A 224 -1 O CYS A 217 N PHE A 52 SHEET 4 AA1 9 HIS A 227 GLN A 234 -1 O PHE A 231 N LEU A 220 SHEET 5 AA1 9 THR A 128 TRP A 131 1 N THR A 128 O LEU A 230 SHEET 6 AA1 9 THR A 159 VAL A 165 1 O LEU A 160 N VAL A 129 SHEET 7 AA1 9 TRP A 149 PHE A 156 -1 N ALA A 152 O SER A 163 SHEET 8 AA1 9 LEU A 349 TRP A 355 -1 O PHE A 353 N LEU A 151 SHEET 9 AA1 9 THR A 362 ARG A 367 -1 O HIS A 366 N VAL A 350 SHEET 1 AA2 2 TYR A 69 TYR A 70 0 SHEET 2 AA2 2 CYS A 196 ALA A 197 -1 O ALA A 197 N TYR A 69 SHEET 1 AA3 5 PHE A 82 ASP A 83 0 SHEET 2 AA3 5 PHE A 299 PRO A 307 -1 O VAL A 300 N PHE A 82 SHEET 3 AA3 5 HIS A 288 ARG A 294 -1 N VAL A 289 O PHE A 306 SHEET 4 AA3 5 TYR A 251 LYS A 258 1 N GLN A 253 O VAL A 290 SHEET 5 AA3 5 CYS A 237 LEU A 238 -1 N CYS A 237 O VAL A 252 SHEET 1 AA4 2 TYR A 92 GLN A 93 0 SHEET 2 AA4 2 VAL A 210 ASN A 211 1 O VAL A 210 N GLN A 93 CISPEP 1 TYR A 88 PRO A 89 0 1.20 CISPEP 2 PRO A 247 PRO A 248 0 2.38 CISPEP 3 ALA A 369 PRO A 370 0 2.96 SITE 1 AC1 27 ARG A 95 GLU A 97 TRP A 131 ARG A 132 SITE 2 AC1 27 GLY A 133 HIS A 134 GLU A 166 ARG A 174 SITE 3 AC1 27 TYR A 189 GLY A 233 GLN A 234 LYS A 255 SITE 4 AC1 27 GLN A 280 HOH A 505 HOH A 515 HOH A 530 SITE 5 AC1 27 HOH A 535 HOH A 562 HOH A 568 HOH A 570 SITE 6 AC1 27 HOH A 582 HOH A 588 HOH A 596 HOH A 633 SITE 7 AC1 27 HOH A 655 HOH A 669 HOH A 725 SITE 1 AC2 4 TYR A 70 HIS A 288 THR A 305 HOH A 545 CRYST1 49.956 87.877 53.289 90.00 113.45 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020018 0.000000 0.008682 0.00000 SCALE2 0.000000 0.011380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020455 0.00000