HEADER OXIDOREDUCTASE, FLUORESCENT PROTEIN 05-MAY-20 6WV5 TITLE HUMAN VKOR C43S MUTANT WITH VITAMIN K1 EPOXIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN K EPOXIDE REDUCTASE CYS43SER MUTANT, TERMINI COMPND 3 RESTRAINED BY GREEN FLUORESCENT PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: GPF (UNP RESIDUES 1-144) + VKOR + GFP (UNP RESIDUES 146- COMPND 6 231); COMPND 7 SYNONYM: VITAMIN K1 2,3-EPOXIDE REDUCTASE SUBUNIT 1; COMPND 8 EC: 1.17.4.4; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: JELLYFISH, HUMAN; SOURCE 4 ORGANISM_TAXID: 6100, 9606; SOURCE 5 GENE: GFP, VKORC1, VKOR, MSTP134, MSTP576, UNQ308/PRO351; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS VITAMIN K EPOXIDE REDUCTASE (VKOR), VITAMIN K, WARFARIN, KEYWDS 2 SUPERWARFARIN, VITAMIN K EXPOXIDE(KO), MEMBRANE PROTEIN, KEYWDS 3 OXIDOREDUCTASE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU,N.SUKUMAR,W.LI REVDAT 5 15-NOV-23 6WV5 1 REMARK REVDAT 4 18-OCT-23 6WV5 1 REMARK REVDAT 3 13-JAN-21 6WV5 1 JRNL REVDAT 2 25-NOV-20 6WV5 1 JRNL REVDAT 1 11-NOV-20 6WV5 0 JRNL AUTH S.LIU,S.LI,G.SHEN,N.SUKUMAR,A.M.KREZEL,W.LI JRNL TITL STRUCTURAL BASIS OF ANTAGONIZING THE VITAMIN K CATALYTIC JRNL TITL 2 CYCLE FOR ANTICOAGULATION. JRNL REF SCIENCE V. 371 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 33154105 JRNL DOI 10.1126/SCIENCE.ABC5667 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.LIU,S.LI,Y.YANG,W.LI REMARK 1 TITL TERMINI RESTRAINING OF SMALL MEMBRANE PROTEINS ENABLES REMARK 1 TITL 2 STRUCTURE DETERMINATION AT ATOMIC RESOLUTION REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 15728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4780 - 5.0849 0.95 2538 118 0.2139 0.2656 REMARK 3 2 5.0849 - 4.0374 0.93 2445 133 0.1999 0.2505 REMARK 3 3 4.0374 - 3.5274 0.93 2452 135 0.2356 0.2522 REMARK 3 4 3.5274 - 3.2050 0.96 2537 150 0.2553 0.2858 REMARK 3 5 3.2050 - 2.9754 0.93 2447 124 0.2731 0.3122 REMARK 3 6 2.9754 - 2.8000 0.95 2517 132 0.3166 0.3252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3033 REMARK 3 ANGLE : 0.543 4111 REMARK 3 CHIRALITY : 0.041 460 REMARK 3 PLANARITY : 0.003 518 REMARK 3 DIHEDRAL : 14.800 1757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5187 -29.3480 -89.5884 REMARK 3 T TENSOR REMARK 3 T11: 0.4499 T22: 0.3984 REMARK 3 T33: 0.4055 T12: 0.0026 REMARK 3 T13: -0.0976 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.0338 L22: 1.2728 REMARK 3 L33: 6.0686 L12: 0.3254 REMARK 3 L13: -1.7081 L23: -2.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: -0.0489 S13: 0.1042 REMARK 3 S21: 0.0021 S22: -0.2113 S23: -0.0970 REMARK 3 S31: -0.2587 S32: 0.3415 S33: 0.0190 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7598 -29.3277 -52.5185 REMARK 3 T TENSOR REMARK 3 T11: 0.6228 T22: 0.4482 REMARK 3 T33: 0.3967 T12: -0.0850 REMARK 3 T13: -0.1082 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.0964 L22: 1.3096 REMARK 3 L33: 5.7861 L12: -0.3459 REMARK 3 L13: 0.4289 L23: -0.0849 REMARK 3 S TENSOR REMARK 3 S11: -0.3126 S12: -0.1205 S13: 0.1915 REMARK 3 S21: 0.3766 S22: -0.0045 S23: -0.1495 REMARK 3 S31: -0.7614 S32: 0.1494 S33: 0.0239 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6011 -31.1931 -82.2385 REMARK 3 T TENSOR REMARK 3 T11: 0.6181 T22: 0.6153 REMARK 3 T33: 0.4996 T12: -0.1186 REMARK 3 T13: -0.0732 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: -0.4499 L22: 1.1471 REMARK 3 L33: 5.6961 L12: -0.4632 REMARK 3 L13: -0.6662 L23: -2.5116 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: -0.1400 S13: 0.1307 REMARK 3 S21: 0.1084 S22: -0.2783 S23: -0.2483 REMARK 3 S31: -0.4915 S32: 0.8328 S33: 0.1842 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG400, 0.1 M AMMONIUM CITRATE REMARK 280 DIBASIC, 0.1 M MES, PH 6.5, LIPIDIC CUBIC PHASE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.46350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.67101 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.62967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 44.46350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.67101 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.62967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 44.46350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.67101 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.62967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.34203 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 153.25933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.34203 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 153.25933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.34203 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 153.25933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 183 REMARK 465 LEU A 184 REMARK 465 SER A 185 REMARK 465 ASP A 186 REMARK 465 VAL A 187 REMARK 465 GLY A 188 REMARK 465 THR A 189 REMARK 465 ALA A 190 REMARK 465 ILE A 191 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 GLN A 309 CG CD OE1 NE2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 HIS A 384 CB CG ND1 CD2 CE1 NE2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 CRO A 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 277 H16 UAV A 401 1.24 REMARK 500 SG CYS A 277 C16 UAV A 401 2.01 REMARK 500 SG CYS A 277 C15 UAV A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -147.16 -137.19 REMARK 500 TYR A 143 172.69 -56.98 REMARK 500 THR A 146 -71.17 -104.62 REMARK 500 TYR A 181 35.82 -95.63 REMARK 500 VAL A 211 -68.27 -94.64 REMARK 500 PHE A 268 -12.70 95.10 REMARK 500 VAL A 269 -70.22 -133.64 REMARK 500 HIS A 300 31.00 -90.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UAV A 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UAV A 401 DBREF1 6WV5 A 1 144 UNP A0A059PIQ0_AEQVI DBREF2 6WV5 A A0A059PIQ0 1 144 DBREF 6WV5 A 145 297 UNP Q9BQB6 VKOR1_HUMAN 3 155 DBREF1 6WV5 A 298 383 UNP A0A059PIQ0_AEQVI DBREF2 6WV5 A A0A059PIQ0 146 231 SEQADV 6WV5 SER A 2 UNP A0A059PIQ ARG 2 CONFLICT SEQADV 6WV5 ARG A 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 6WV5 CRO A 66 UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 6WV5 CRO A 66 UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 6WV5 CRO A 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 6WV5 SER A 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 6WV5 ARG A 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 6WV5 SER A 185 UNP Q9BQB6 CYS 43 ENGINEERED MUTATION SEQADV 6WV5 VAL A 358 UNP A0A059PIQ ALA 206 CONFLICT SEQADV 6WV5 HIS A 384 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV5 HIS A 385 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV5 HIS A 386 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV5 HIS A 387 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV5 HIS A 388 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV5 HIS A 389 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV5 HIS A 390 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV5 HIS A 391 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV5 HIS A 392 UNP A0A059PIQ EXPRESSION TAG SEQRES 1 A 390 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 390 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 390 PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN SEQRES 4 A 390 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 390 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO SEQRES 6 A 390 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 390 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 390 GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR SEQRES 9 A 390 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 390 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 390 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SER SEQRES 12 A 390 THR TRP GLY SER PRO GLY TRP VAL ARG LEU ALA LEU CYS SEQRES 13 A 390 LEU THR GLY LEU VAL LEU SER LEU TYR ALA LEU HIS VAL SEQRES 14 A 390 LYS ALA ALA ARG ALA ARG ASP ARG ASP TYR ARG ALA LEU SEQRES 15 A 390 SER ASP VAL GLY THR ALA ILE SER CYS SER ARG VAL PHE SEQRES 16 A 390 SER SER ARG TRP GLY ARG GLY PHE GLY LEU VAL GLU HIS SEQRES 17 A 390 VAL LEU GLY GLN ASP SER ILE LEU ASN GLN SER ASN SER SEQRES 18 A 390 ILE PHE GLY CYS ILE PHE TYR THR LEU GLN LEU LEU LEU SEQRES 19 A 390 GLY CYS LEU ARG THR ARG TRP ALA SER VAL LEU MET LEU SEQRES 20 A 390 LEU SER SER LEU VAL SER LEU ALA GLY SER VAL TYR LEU SEQRES 21 A 390 ALA TRP ILE LEU PHE PHE VAL LEU TYR ASP PHE CYS ILE SEQRES 22 A 390 VAL CYS ILE THR THR TYR ALA ILE ASN VAL SER LEU MET SEQRES 23 A 390 TRP LEU SER PHE ARG LYS VAL GLN GLU ASN SER HIS ASN SEQRES 24 A 390 VAL TYR ILE THR ALA ASP LYS GLN LYS ASN GLY ILE LYS SEQRES 25 A 390 ALA ASN PHE LYS ILE ARG HIS ASN VAL GLU ASP GLY SER SEQRES 26 A 390 VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR PRO ILE SEQRES 27 A 390 GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SEQRES 28 A 390 SER THR GLN SER VAL LEU SER LYS ASP PRO ASN GLU LYS SEQRES 29 A 390 ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR ALA ALA SEQRES 30 A 390 GLY ILE THR HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS MODRES 6WV5 CRO A 66 THR CHROMOPHORE MODRES 6WV5 CRO A 66 TYR CHROMOPHORE MODRES 6WV5 CRO A 66 GLY CHROMOPHORE HET CRO A 66 22 HET UAV A 401 57 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM UAV (2R,3R)-2-HYDROXY-3-METHYL-2-[(2E,7S)-3,7,11,15- HETNAM 2 UAV TETRAMETHYLHEXADEC-2-EN-1-YL]-2,3-DIHYDRONAPHTHALENE- HETNAM 3 UAV 1,4-DIONE HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 UAV C31 H48 O3 HELIX 1 AA1 GLY A 4 THR A 9 5 6 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 GLY A 151 TYR A 181 1 31 HELIX 7 AA7 SER A 199 GLY A 206 5 8 HELIX 8 AA8 LEU A 207 LEU A 212 1 6 HELIX 9 AA9 SER A 221 GLY A 237 1 17 HELIX 10 AB1 THR A 241 PHE A 267 1 27 HELIX 11 AB2 CYS A 274 SER A 299 1 26 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O GLY A 31 N VAL A 16 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 369 ALA A 379 -1 O LEU A 372 N LEU A 44 SHEET 5 AA112 HIS A 351 SER A 360 -1 N SER A 360 O VAL A 371 SHEET 6 AA112 VAL A 302 ASP A 307 -1 N ILE A 304 O HIS A 351 SHEET 7 AA112 GLY A 312 ASN A 322 -1 O LYS A 314 N THR A 305 SHEET 8 AA112 VAL A 328 PRO A 339 -1 O GLN A 329 N HIS A 321 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N GLU A 95 O GLN A 336 SHEET 10 AA112 THR A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SSBOND 1 CYS A 193 CYS A 274 1555 1555 2.03 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.52 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.33 CISPEP 1 MET A 88 PRO A 89 0 0.39 SITE 1 AC1 12 VAL A 196 GLY A 202 ASN A 222 GLY A 226 SITE 2 AC1 12 SER A 255 SER A 259 LEU A 262 LEU A 266 SITE 3 AC1 12 CYS A 277 THR A 280 TYR A 281 ASN A 284 CRYST1 88.927 88.927 229.889 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011245 0.006492 0.000000 0.00000 SCALE2 0.000000 0.012985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004350 0.00000