HEADER TRANSFERASE 07-MAY-20 6WW1 TITLE CRYSTAL STRUCTURE OF THE LMFPPS MUTANT E97Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.1,2.5.1.10; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: FPPS, LMJF_22_1360; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FPPS, FARNESYL DIPHOSPHATE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MAHESHWARI,Y.S.KIM,S.B.GABELLI REVDAT 2 18-OCT-23 6WW1 1 REMARK REVDAT 1 07-OCT-20 6WW1 0 JRNL AUTH S.MAHESHWARI,Y.S.KIM,S.ARIPIRALA,M.MURPHY,L.M.AMZEL, JRNL AUTH 2 S.B.GABELLI JRNL TITL IDENTIFYING STRUCTURAL DETERMINANTS OF PRODUCT SPECIFICITY JRNL TITL 2 IN LEISHMANIA MAJOR FARNESYL DIPHOSPHATE SYNTHASE. JRNL REF BIOCHEMISTRY V. 59 2751 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32584028 JRNL DOI 10.1021/ACS.BIOCHEM.0C00432 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 40295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2161 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.308 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.691 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5962 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8086 ; 1.812 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12 ; 1.042 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 724 ; 5.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;38.182 ;24.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1028 ;16.423 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 903 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4426 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6WW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43443 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 67.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4JZX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 15-25 % PEG 8000, 100-200 REMARK 280 MM CAACETATE, VAPOR DIFFUSION, TEMPERATURE 291.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.34950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.71250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.03900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.71250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.34950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.03900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 251 O HOH B 501 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 653 O HOH A 683 2665 0.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 3 CG HIS A 3 CD2 0.061 REMARK 500 HIS A 103 CG HIS A 103 CD2 0.063 REMARK 500 HIS A 186 CG HIS A 186 CD2 0.054 REMARK 500 LEU A 215 C PRO A 216 N 0.149 REMARK 500 HIS B 78 CG HIS B 78 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 119 -73.81 -108.12 REMARK 500 THR A 120 156.22 73.26 REMARK 500 LYS A 179 46.96 -107.10 REMARK 500 THR A 208 -52.96 -130.54 REMARK 500 GLU A 228 44.96 -101.35 REMARK 500 LYS A 229 -4.92 -142.54 REMARK 500 THR A 284 -34.86 -141.95 REMARK 500 PRO A 286 -168.99 -78.68 REMARK 500 ALA A 295 42.78 -102.10 REMARK 500 ASN A 296 -37.47 -159.42 REMARK 500 VAL B 119 -75.03 -119.74 REMARK 500 THR B 120 159.14 73.34 REMARK 500 THR B 208 -53.43 -129.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 821 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 822 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH A 823 DISTANCE = 8.92 ANGSTROMS REMARK 525 HOH B 772 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD2 REMARK 620 2 ASP A 102 OD2 88.6 REMARK 620 3 476 A 405 O13 87.1 167.3 REMARK 620 4 476 A 405 O15 79.2 78.8 88.7 REMARK 620 5 HOH A 505 O 94.4 94.9 97.3 171.0 REMARK 620 6 HOH A 731 O 175.8 92.1 91.3 96.9 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 102 OD1 87.2 REMARK 620 3 ASP A 102 OD2 84.7 47.5 REMARK 620 4 476 A 405 O15 99.5 126.2 79.7 REMARK 620 5 HOH A 565 O 86.5 66.8 114.0 165.6 REMARK 620 6 HOH A 579 O 162.3 104.1 113.0 84.9 85.6 REMARK 620 7 HOH A 648 O 82.4 145.9 160.2 87.6 80.2 80.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 OD2 REMARK 620 2 476 A 405 O12 87.8 REMARK 620 3 476 A 405 O16 90.6 84.7 REMARK 620 4 HOH A 521 O 93.4 173.0 88.4 REMARK 620 5 HOH A 529 O 85.3 95.6 175.9 91.4 REMARK 620 6 HOH A 542 O 171.3 100.3 93.5 79.0 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 OD2 REMARK 620 2 ASP B 102 OD2 80.3 REMARK 620 3 476 B 405 O13 94.7 172.7 REMARK 620 4 476 B 405 O15 85.6 73.8 100.6 REMARK 620 5 HOH B 516 O 82.4 89.9 94.7 161.3 REMARK 620 6 HOH B 703 O 166.4 90.9 95.0 102.0 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 OD1 REMARK 620 2 ASP B 102 OD1 95.4 REMARK 620 3 ASP B 102 OD2 87.6 46.0 REMARK 620 4 476 B 405 O15 98.0 123.8 80.3 REMARK 620 5 HOH B 556 O 79.7 148.2 161.4 88.0 REMARK 620 6 HOH B 562 O 161.5 99.9 110.5 82.2 81.8 REMARK 620 7 HOH B 577 O 89.2 69.2 114.3 164.1 79.3 86.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 250 OD2 REMARK 620 2 476 B 405 O12 91.7 REMARK 620 3 476 B 405 O16 97.1 85.5 REMARK 620 4 HOH B 501 O 92.2 171.6 86.7 REMARK 620 5 HOH B 590 O 162.0 96.7 99.4 81.7 REMARK 620 6 HOH B 683 O 85.0 85.6 170.9 102.1 79.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPR A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 476 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPR B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 476 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 406 DBREF 6WW1 A 1 362 UNP Q4QBL1 Q4QBL1_LEIMA 1 362 DBREF 6WW1 B 1 362 UNP Q4QBL1 Q4QBL1_LEIMA 1 362 SEQADV 6WW1 TYR A 97 UNP Q4QBL1 GLU 97 ENGINEERED MUTATION SEQADV 6WW1 TYR B 97 UNP Q4QBL1 GLU 97 ENGINEERED MUTATION SEQRES 1 A 362 MET ALA HIS MET GLU ARG PHE GLN LYS VAL TYR GLU GLU SEQRES 2 A 362 VAL GLN GLU PHE LEU LEU GLY ASP ALA GLU LYS ARG PHE SEQRES 3 A 362 GLU MET ASP VAL HIS ARG LYS GLY TYR LEU LYS SER MET SEQRES 4 A 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY SEQRES 5 A 362 LEU CYS VAL VAL ASP VAL ALA GLU ALA MET ALA LYS ASP SEQRES 6 A 362 THR GLN MET ASP ALA ALA ALA MET GLU ARG VAL LEU HIS SEQRES 7 A 362 ASP ALA CYS VAL CYS GLY TRP MET ILE GLU MET LEU GLN SEQRES 8 A 362 ALA HIS PHE LEU VAL TYR ASP ASP ILE MET ASP HIS SER SEQRES 9 A 362 LYS THR ARG ARG GLY LYS PRO CYS TRP TYR LEU HIS PRO SEQRES 10 A 362 GLY VAL THR ALA GLN VAL ALA ILE ASN ASP GLY LEU ILE SEQRES 11 A 362 LEU LEU ALA TRP ALA THR GLN MET ALA LEU HIS TYR PHE SEQRES 12 A 362 ALA ASP ARG PRO PHE LEU ALA GLU VAL LEU ARG VAL PHE SEQRES 13 A 362 HIS ASP VAL ASP LEU THR THR THR ILE GLY GLN LEU TYR SEQRES 14 A 362 ASP VAL THR SER MET VAL ASP SER ALA LYS LEU ASP ALA SEQRES 15 A 362 LYS VAL ALA HIS ALA ASN THR THR ASP TYR VAL GLU TYR SEQRES 16 A 362 THR PRO PHE ASN HIS ARG ARG ILE VAL VAL TYR LYS THR SEQRES 17 A 362 ALA TYR TYR THR TYR TRP LEU PRO LEU VAL MET GLY LEU SEQRES 18 A 362 LEU VAL SER GLY THR LEU GLU LYS VAL ASP LYS LYS ALA SEQRES 19 A 362 THR HIS LYS VAL ALA MET VAL MET GLY GLU TYR PHE GLN SEQRES 20 A 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 A 362 LYS LEU GLY LYS ILE GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 A 362 CYS SER TRP LEU ALA VAL THR PHE LEU THR THR ALA PRO SEQRES 23 A 362 ALA GLU LYS VAL ALA GLU PHE LYS ALA ASN TYR GLY SER SEQRES 24 A 362 THR ASP PRO ALA ALA VAL ALA VAL ILE LYS GLN LEU TYR SEQRES 25 A 362 THR GLU GLN ASN LEU LEU ALA ARG PHE GLU GLU TYR GLU SEQRES 26 A 362 LYS ALA VAL VAL ALA GLU VAL GLU GLN LEU ILE ALA ALA SEQRES 27 A 362 LEU GLU ALA GLN ASN ALA ALA PHE ALA ALA SER VAL LYS SEQRES 28 A 362 VAL LEU TRP SER LYS THR TYR LYS ARG GLN LYS SEQRES 1 B 362 MET ALA HIS MET GLU ARG PHE GLN LYS VAL TYR GLU GLU SEQRES 2 B 362 VAL GLN GLU PHE LEU LEU GLY ASP ALA GLU LYS ARG PHE SEQRES 3 B 362 GLU MET ASP VAL HIS ARG LYS GLY TYR LEU LYS SER MET SEQRES 4 B 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY SEQRES 5 B 362 LEU CYS VAL VAL ASP VAL ALA GLU ALA MET ALA LYS ASP SEQRES 6 B 362 THR GLN MET ASP ALA ALA ALA MET GLU ARG VAL LEU HIS SEQRES 7 B 362 ASP ALA CYS VAL CYS GLY TRP MET ILE GLU MET LEU GLN SEQRES 8 B 362 ALA HIS PHE LEU VAL TYR ASP ASP ILE MET ASP HIS SER SEQRES 9 B 362 LYS THR ARG ARG GLY LYS PRO CYS TRP TYR LEU HIS PRO SEQRES 10 B 362 GLY VAL THR ALA GLN VAL ALA ILE ASN ASP GLY LEU ILE SEQRES 11 B 362 LEU LEU ALA TRP ALA THR GLN MET ALA LEU HIS TYR PHE SEQRES 12 B 362 ALA ASP ARG PRO PHE LEU ALA GLU VAL LEU ARG VAL PHE SEQRES 13 B 362 HIS ASP VAL ASP LEU THR THR THR ILE GLY GLN LEU TYR SEQRES 14 B 362 ASP VAL THR SER MET VAL ASP SER ALA LYS LEU ASP ALA SEQRES 15 B 362 LYS VAL ALA HIS ALA ASN THR THR ASP TYR VAL GLU TYR SEQRES 16 B 362 THR PRO PHE ASN HIS ARG ARG ILE VAL VAL TYR LYS THR SEQRES 17 B 362 ALA TYR TYR THR TYR TRP LEU PRO LEU VAL MET GLY LEU SEQRES 18 B 362 LEU VAL SER GLY THR LEU GLU LYS VAL ASP LYS LYS ALA SEQRES 19 B 362 THR HIS LYS VAL ALA MET VAL MET GLY GLU TYR PHE GLN SEQRES 20 B 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 B 362 LYS LEU GLY LYS ILE GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 B 362 CYS SER TRP LEU ALA VAL THR PHE LEU THR THR ALA PRO SEQRES 23 B 362 ALA GLU LYS VAL ALA GLU PHE LYS ALA ASN TYR GLY SER SEQRES 24 B 362 THR ASP PRO ALA ALA VAL ALA VAL ILE LYS GLN LEU TYR SEQRES 25 B 362 THR GLU GLN ASN LEU LEU ALA ARG PHE GLU GLU TYR GLU SEQRES 26 B 362 LYS ALA VAL VAL ALA GLU VAL GLU GLN LEU ILE ALA ALA SEQRES 27 B 362 LEU GLU ALA GLN ASN ALA ALA PHE ALA ALA SER VAL LYS SEQRES 28 B 362 VAL LEU TRP SER LYS THR TYR LYS ARG GLN LYS HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET IPR A 404 14 HET 476 A 405 20 HET ACT A 406 4 HET CA B 401 1 HET CA B 402 1 HET CA B 403 1 HET IPR B 404 14 HET 476 B 405 20 HET ACT B 406 4 HETNAM CA CALCIUM ION HETNAM IPR ISOPENTYL PYROPHOSPHATE HETNAM 476 3-BUTYL-1-(2,2-DIPHOSPHONOETHYL)PYRIDINIUM HETNAM ACT ACETATE ION FORMUL 3 CA 6(CA 2+) FORMUL 6 IPR 2(C5 H14 O7 P2) FORMUL 7 476 2(C11 H20 N O6 P2 1+) FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 15 HOH *595(H2 O) HELIX 1 AA1 HIS A 3 GLU A 27 1 25 HELIX 2 AA2 ASP A 29 LEU A 45 1 17 HELIX 3 AA3 TYR A 49 THR A 66 1 18 HELIX 4 AA4 ASP A 69 HIS A 103 1 35 HELIX 5 AA5 TRP A 113 HIS A 116 5 4 HELIX 6 AA6 VAL A 119 PHE A 143 1 25 HELIX 7 AA7 PHE A 148 THR A 172 1 25 HELIX 8 AA8 ASP A 176 LEU A 180 5 5 HELIX 9 AA9 THR A 196 THR A 208 1 13 HELIX 10 AB1 THR A 208 TYR A 213 1 6 HELIX 11 AB2 TYR A 213 SER A 224 1 12 HELIX 12 AB3 THR A 226 VAL A 230 5 5 HELIX 13 AB4 ASP A 231 THR A 257 1 27 HELIX 14 AB5 PRO A 258 GLY A 263 1 6 HELIX 15 AB6 THR A 267 ALA A 272 1 6 HELIX 16 AB7 SER A 275 THR A 283 1 9 HELIX 17 AB8 PRO A 286 ALA A 295 1 10 HELIX 18 AB9 ASP A 301 GLN A 315 1 15 HELIX 19 AC1 ASN A 316 ALA A 341 1 26 HELIX 20 AC2 ASN A 343 TYR A 358 1 16 HELIX 21 AC3 HIS B 3 PHE B 26 1 24 HELIX 22 AC4 ASP B 29 LEU B 45 1 17 HELIX 23 AC5 TYR B 49 ASP B 65 1 17 HELIX 24 AC6 ASP B 69 HIS B 103 1 35 HELIX 25 AC7 TRP B 113 HIS B 116 5 4 HELIX 26 AC8 VAL B 119 PHE B 143 1 25 HELIX 27 AC9 PHE B 148 THR B 172 1 25 HELIX 28 AD1 ASP B 176 LEU B 180 5 5 HELIX 29 AD2 THR B 196 THR B 208 1 13 HELIX 30 AD3 THR B 208 TYR B 213 1 6 HELIX 31 AD4 TYR B 213 GLY B 225 1 13 HELIX 32 AD5 THR B 226 VAL B 230 5 5 HELIX 33 AD6 ASP B 231 ASP B 254 1 24 HELIX 34 AD7 PRO B 258 GLY B 263 1 6 HELIX 35 AD8 SER B 275 ALA B 285 1 11 HELIX 36 AD9 PRO B 286 TYR B 297 1 12 HELIX 37 AE1 ASP B 301 GLN B 315 1 15 HELIX 38 AE2 ASN B 316 ASN B 343 1 28 HELIX 39 AE3 ASN B 343 LYS B 356 1 14 SHEET 1 AA1 2 THR A 106 ARG A 107 0 SHEET 2 AA1 2 LYS A 110 PRO A 111 -1 O LYS A 110 N ARG A 107 SHEET 1 AA2 2 THR B 106 ARG B 107 0 SHEET 2 AA2 2 LYS B 110 PRO B 111 -1 O LYS B 110 N ARG B 107 LINK OD2 ASP A 98 CA CA A 402 1555 1555 2.28 LINK OD1 ASP A 98 CA CA A 403 1555 1555 2.42 LINK OD2 ASP A 102 CA CA A 402 1555 1555 2.20 LINK OD1 ASP A 102 CA CA A 403 1555 1555 2.92 LINK OD2 ASP A 102 CA CA A 403 1555 1555 2.39 LINK OD2 ASP A 250 CA CA A 401 1555 1555 2.68 LINK CA CA A 401 O12 476 A 405 1555 1555 2.22 LINK CA CA A 401 O16 476 A 405 1555 1555 2.24 LINK CA CA A 401 O HOH A 521 1555 1555 2.47 LINK CA CA A 401 O HOH A 529 1555 1555 2.52 LINK CA CA A 401 O HOH A 542 1555 1555 2.45 LINK CA CA A 402 O13 476 A 405 1555 1555 2.21 LINK CA CA A 402 O15 476 A 405 1555 1555 2.49 LINK CA CA A 402 O HOH A 505 1555 1555 2.23 LINK CA CA A 402 O HOH A 731 1555 1555 2.41 LINK CA CA A 403 O15 476 A 405 1555 1555 2.27 LINK CA CA A 403 O HOH A 565 1555 1555 2.47 LINK CA CA A 403 O HOH A 579 1555 1555 2.33 LINK CA CA A 403 O HOH A 648 1555 1555 2.29 LINK OD2 ASP B 98 CA CA B 402 1555 1555 2.31 LINK OD1 ASP B 98 CA CA B 403 1555 1555 2.28 LINK OD2 ASP B 102 CA CA B 402 1555 1555 2.43 LINK OD1 ASP B 102 CA CA B 403 1555 1555 3.02 LINK OD2 ASP B 102 CA CA B 403 1555 1555 2.32 LINK OD2 ASP B 250 CA CA B 401 1555 1555 2.33 LINK CA CA B 401 O12 476 B 405 1555 1555 2.38 LINK CA CA B 401 O16 476 B 405 1555 1555 2.25 LINK CA CA B 401 O HOH B 501 1555 1555 2.25 LINK CA CA B 401 O HOH B 590 1555 1555 2.45 LINK CA CA B 401 O HOH B 683 1555 1555 2.44 LINK CA CA B 402 O13 476 B 405 1555 1555 2.09 LINK CA CA B 402 O15 476 B 405 1555 1555 2.41 LINK CA CA B 402 O HOH B 516 1555 1555 2.24 LINK CA CA B 402 O HOH B 703 1555 1555 2.34 LINK CA CA B 403 O15 476 B 405 1555 1555 2.18 LINK CA CA B 403 O HOH B 556 1555 1555 2.45 LINK CA CA B 403 O HOH B 562 1555 1555 2.56 LINK CA CA B 403 O HOH B 577 1555 1555 2.29 SITE 1 AC1 5 ASP A 250 476 A 405 HOH A 521 HOH A 529 SITE 2 AC1 5 HOH A 542 SITE 1 AC2 6 ASP A 98 ASP A 102 CA A 403 476 A 405 SITE 2 AC2 6 HOH A 505 HOH A 731 SITE 1 AC3 7 ASP A 98 ASP A 102 CA A 402 476 A 405 SITE 2 AC3 7 HOH A 565 HOH A 579 HOH A 648 SITE 1 AC4 18 GLY A 47 LYS A 48 ARG A 51 GLN A 91 SITE 2 AC4 18 ARG A 108 THR A 208 TYR A 211 PHE A 246 SITE 3 AC4 18 GLN A 247 ASP A 250 476 A 405 HOH A 523 SITE 4 AC4 18 HOH A 555 HOH A 597 HOH A 610 HOH A 636 SITE 5 AC4 18 HOH A 642 HOH A 688 SITE 1 AC5 16 PHE A 94 ASP A 98 ASP A 102 ARG A 107 SITE 2 AC5 16 GLN A 167 LYS A 207 THR A 208 ASP A 250 SITE 3 AC5 16 LYS A 264 CA A 401 CA A 402 CA A 403 SITE 4 AC5 16 IPR A 404 HOH A 578 HOH A 648 HOH A 678 SITE 1 AC6 9 ASP A 254 GLY A 266 THR A 267 ASP A 268 SITE 2 AC6 9 ILE A 269 GLU A 270 VAL A 305 LYS A 309 SITE 3 AC6 9 HOH A 672 SITE 1 AC7 5 ASP B 250 476 B 405 HOH B 501 HOH B 590 SITE 2 AC7 5 HOH B 683 SITE 1 AC8 6 ASP B 98 ASP B 102 CA B 403 476 B 405 SITE 2 AC8 6 HOH B 516 HOH B 703 SITE 1 AC9 7 ASP B 98 ASP B 102 CA B 402 476 B 405 SITE 2 AC9 7 HOH B 556 HOH B 562 HOH B 577 SITE 1 AD1 16 GLY B 47 LYS B 48 ARG B 51 GLN B 91 SITE 2 AD1 16 ARG B 108 TYR B 211 GLN B 247 ASP B 250 SITE 3 AD1 16 476 B 405 HOH B 523 HOH B 527 HOH B 547 SITE 4 AD1 16 HOH B 573 HOH B 609 HOH B 627 HOH B 647 SITE 1 AD2 16 ASP B 98 ASP B 102 ARG B 107 GLN B 167 SITE 2 AD2 16 LYS B 207 THR B 208 ASP B 250 LYS B 264 SITE 3 AD2 16 CA B 401 CA B 402 CA B 403 IPR B 404 SITE 4 AD2 16 HOH B 501 HOH B 556 HOH B 592 HOH B 604 SITE 1 AD3 8 ASP B 254 GLY B 266 THR B 267 ASP B 268 SITE 2 AD3 8 ILE B 269 GLU B 270 VAL B 305 LYS B 309 CRYST1 80.699 86.078 107.425 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012392 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009309 0.00000