HEADER IMMUNE SYSTEM/VIRAL PROTEIN 09-MAY-20 6WWC TITLE VACCINE-ELICITED MOUSE FP-TARGETING NEUTRALIZING ANTIBODY VFP16.02 TITLE 2 WITH S48K MUTATION IN LIGHT CHAIN IN COMPLEX WITH HIV FUSION PEPTIDE TITLE 3 (RESIDUE 512-519) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VFP16.02 ANTIBODY HEAVY CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VFP16.02 ANTIBODY LIGHT CHAIN; COMPND 7 CHAIN: B, H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FUSION PEPTIDE; COMPND 11 CHAIN: C, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_COMMON: HIV-1; SOURCE 19 ORGANISM_TAXID: 11676 KEYWDS HIV, FUSION PEPTIDE, ANTIBODY, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,Y.WANG,P.D.KWONG REVDAT 3 18-OCT-23 6WWC 1 REMARK REVDAT 2 17-MAR-21 6WWC 1 JRNL REVDAT 1 24-FEB-21 6WWC 0 JRNL AUTH B.MADAN,B.ZHANG,K.XU,C.W.CHAO,S.O'DELL,J.R.WOLFE,G.Y.CHUANG, JRNL AUTH 2 A.S.FAHAD,H.GENG,R.KONG,M.K.LOUDER,T.D.NGUYEN,R.RAWI, JRNL AUTH 3 A.SCHON,Z.SHENG,R.NIMRANIA,Y.WANG,T.ZHOU,B.C.LIN, JRNL AUTH 4 N.A.DORIA-ROSE,L.SHAPIRO,P.D.KWONG,B.J.DEKOSKY JRNL TITL MUTATIONAL FITNESS LANDSCAPES REVEAL GENETIC AND STRUCTURAL JRNL TITL 2 IMPROVEMENT PATHWAYS FOR A VACCINE-ELICITED HIV-1 BROADLY JRNL TITL 3 NEUTRALIZING ANTIBODY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33649208 JRNL DOI 10.1073/PNAS.2011653118 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.1 REMARK 3 NUMBER OF REFLECTIONS : 23874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2600 - 5.1223 0.96 3390 156 0.1919 0.2360 REMARK 3 2 5.1223 - 4.0677 0.96 3308 155 0.1706 0.2333 REMARK 3 3 4.0677 - 3.5540 0.98 3353 163 0.2001 0.2502 REMARK 3 4 3.5540 - 3.2293 0.98 3356 156 0.2215 0.2909 REMARK 3 5 3.2293 - 2.9980 0.99 3341 171 0.2429 0.3180 REMARK 3 6 2.9980 - 2.8213 0.89 3030 160 0.2616 0.2885 REMARK 3 7 2.8213 - 2.6801 0.62 2117 103 0.2814 0.3229 REMARK 3 8 2.6801 - 2.5634 0.26 871 44 0.3088 0.4294 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 1278 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 1314 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 42 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6CDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5, 30% V/V REMARK 280 PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.26300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 132 REMARK 465 SER A 133 REMARK 465 ALA A 134 REMARK 465 ALA A 135 REMARK 465 GLY D 132 REMARK 465 SER D 133 REMARK 465 ALA D 134 REMARK 465 ALA D 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 2 CG1 REMARK 470 VAL H 2 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 205 O HOH B 301 1.88 REMARK 500 O TYR B 54 O HOH B 302 1.91 REMARK 500 O TYR H 101 O HOH H 301 1.93 REMARK 500 O HOH D 329 O HOH D 331 1.95 REMARK 500 OD2 ASP H 33 OH TYR H 37 1.96 REMARK 500 OD2 ASP B 33 OH TYR B 37 1.97 REMARK 500 OG1 THR A 40 O ARG A 43 2.06 REMARK 500 OG1 THR D 71 O HOH D 301 2.10 REMARK 500 N ILE H 149 O HOH H 302 2.11 REMARK 500 O HOH A 314 O HOH B 322 2.12 REMARK 500 O HOH B 332 O HOH B 335 2.13 REMARK 500 OG SER B 20 O HOH B 303 2.15 REMARK 500 O PRO D 217 O HOH D 302 2.16 REMARK 500 OE2 GLU B 39 O HOH B 304 2.18 REMARK 500 N ARG B 58 O HOH B 302 2.18 REMARK 500 O TYR D 104 O HOH D 303 2.19 REMARK 500 O SER B 206 O HOH B 305 2.19 REMARK 500 NZ LYS A 23 O SER A 76 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 121 NZ LYS H 204 1556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 62 CA - CB - CG ANGL. DEV. = -18.3 DEGREES REMARK 500 LYS A 65 C - N - CA ANGL. DEV. = -19.4 DEGREES REMARK 500 LYS A 65 CB - CG - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU B 3 CB - CG - CD2 ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG D 43 CB - CG - CD ANGL. DEV. = -20.7 DEGREES REMARK 500 ARG D 43 CG - CD - NE ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG D 43 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ILE H 111 CG1 - CB - CG2 ANGL. DEV. = -32.7 DEGREES REMARK 500 ARG H 193 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG H 193 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 55 86.35 59.02 REMARK 500 VAL B 56 -38.04 -20.62 REMARK 500 PRO B 146 -168.51 -74.93 REMARK 500 SER D 139 -12.46 73.15 REMARK 500 SER D 165 -70.83 -72.79 REMARK 500 LYS H 55 87.63 58.50 REMARK 500 VAL H 56 -41.14 -17.77 REMARK 500 PRO H 146 -167.48 -75.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 65 GLY A 66 -147.26 REMARK 500 LYS B 55 VAL B 56 -132.75 REMARK 500 LYS H 55 VAL H 56 -131.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 331 DISTANCE = 6.07 ANGSTROMS DBREF 6WWC A 1 217 PDB 6WWC 6WWC 1 217 DBREF 6WWC B 1 218 PDB 6WWC 6WWC 1 218 DBREF 6WWC C 512 519 PDB 6WWC 6WWC 512 519 DBREF 6WWC D 1 217 PDB 6WWC 6WWC 1 217 DBREF 6WWC F 512 519 PDB 6WWC 6WWC 512 519 DBREF 6WWC H 1 218 PDB 6WWC 6WWC 1 218 SEQRES 1 A 217 GLN VAL GLN LEU LEU GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 A 217 PRO GLY ALA SER VAL THR LEU SER CYS LYS ALA SER GLY SEQRES 3 A 217 TYR ALA PHE SER ASP TYR GLU ILE HIS TRP VAL LYS GLN SEQRES 4 A 217 THR PRO VAL ARG GLY LEU ASP TRP ILE GLY ALA PHE ASP SEQRES 5 A 217 PRO LYS SER GLY ALA SER ALA SER ASN GLN LYS VAL LYS SEQRES 6 A 217 GLY ARG ALA ILE LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 A 217 ALA TYR MET GLU LEU ARG SER LEU THR SER GLU ASP SER SEQRES 8 A 217 ALA VAL TYR TYR CYS THR ARG LEU ARG TYR PHE GLY TYR SEQRES 9 A 217 PHE ASP VAL TRP GLY THR GLY THR THR VAL THR VAL SER SEQRES 10 A 217 SER ALA SER THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 A 217 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 A 217 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 A 217 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 A 217 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 A 217 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 A 217 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 A 217 THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 1 B 218 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 B 218 SER LEU GLY GLY GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 B 218 GLN SER VAL VAL TYR SER ASP GLY ASP THR TYR LEU GLU SEQRES 4 B 218 TRP TYR LEU GLN LYS PRO GLY GLN LYS PRO LYS LEU LEU SEQRES 5 B 218 ILE TYR LYS VAL SER ARG ARG PHE SER GLY VAL PRO ASP SEQRES 6 B 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 B 218 LYS ILE SER ARG VAL GLU THR GLU ASP LEU GLY VAL TYR SEQRES 8 B 218 TYR CYS PHE GLN GLY SER HIS VAL PRO TYR THR PHE GLY SEQRES 9 B 218 GLY GLY THR LYS LEU GLU ILE LYS ARG THR ASP ALA ALA SEQRES 10 B 218 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 B 218 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 B 218 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 B 218 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 B 218 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 B 218 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 B 218 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 B 218 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU SEQRES 1 C 8 ALA VAL GLY ILE GLY ALA VAL PHE SEQRES 1 D 217 GLN VAL GLN LEU LEU GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 D 217 PRO GLY ALA SER VAL THR LEU SER CYS LYS ALA SER GLY SEQRES 3 D 217 TYR ALA PHE SER ASP TYR GLU ILE HIS TRP VAL LYS GLN SEQRES 4 D 217 THR PRO VAL ARG GLY LEU ASP TRP ILE GLY ALA PHE ASP SEQRES 5 D 217 PRO LYS SER GLY ALA SER ALA SER ASN GLN LYS VAL LYS SEQRES 6 D 217 GLY ARG ALA ILE LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 D 217 ALA TYR MET GLU LEU ARG SER LEU THR SER GLU ASP SER SEQRES 8 D 217 ALA VAL TYR TYR CYS THR ARG LEU ARG TYR PHE GLY TYR SEQRES 9 D 217 PHE ASP VAL TRP GLY THR GLY THR THR VAL THR VAL SER SEQRES 10 D 217 SER ALA SER THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 D 217 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 D 217 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 D 217 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 D 217 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 D 217 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 D 217 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 D 217 THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 1 F 8 ALA VAL GLY ILE GLY ALA VAL PHE SEQRES 1 H 218 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 H 218 SER LEU GLY GLY GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 H 218 GLN SER VAL VAL TYR SER ASP GLY ASP THR TYR LEU GLU SEQRES 4 H 218 TRP TYR LEU GLN LYS PRO GLY GLN LYS PRO LYS LEU LEU SEQRES 5 H 218 ILE TYR LYS VAL SER ARG ARG PHE SER GLY VAL PRO ASP SEQRES 6 H 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 H 218 LYS ILE SER ARG VAL GLU THR GLU ASP LEU GLY VAL TYR SEQRES 8 H 218 TYR CYS PHE GLN GLY SER HIS VAL PRO TYR THR PHE GLY SEQRES 9 H 218 GLY GLY THR LYS LEU GLU ILE LYS ARG THR ASP ALA ALA SEQRES 10 H 218 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 H 218 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 H 218 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 H 218 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 H 218 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 H 218 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 H 218 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 H 218 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU FORMUL 7 HOH *108(H2 O) HELIX 1 AA1 ALA A 28 TYR A 32 5 5 HELIX 2 AA2 GLN A 62 LYS A 65 5 4 HELIX 3 AA3 THR A 87 SER A 91 5 5 HELIX 4 AA4 SER A 161 SER A 163 5 3 HELIX 5 AA5 GLU B 84 LEU B 88 5 5 HELIX 6 AA6 SER B 126 THR B 131 1 6 HELIX 7 AA7 LYS B 188 GLU B 192 1 5 HELIX 8 AA8 ALA D 28 TYR D 32 5 5 HELIX 9 AA9 GLN D 62 LYS D 65 5 4 HELIX 10 AB1 THR D 87 SER D 91 5 5 HELIX 11 AB2 SER D 161 SER D 163 5 3 HELIX 12 AB3 PRO D 189 TRP D 193 5 5 HELIX 13 AB4 GLU H 84 LEU H 88 5 5 HELIX 14 AB5 SER H 126 THR H 131 1 6 HELIX 15 AB6 LYS H 188 GLU H 192 1 5 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O LYS A 23 N LEU A 5 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O MET A 81 N LEU A 20 SHEET 4 AA1 4 ALA A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 ALA A 9 VAL A 12 0 SHEET 2 AA2 6 THR A 112 VAL A 116 1 O THR A 115 N VAL A 12 SHEET 3 AA2 6 ALA A 92 LEU A 99 -1 N ALA A 92 O VAL A 114 SHEET 4 AA2 6 GLU A 33 GLN A 39 -1 N HIS A 35 O THR A 97 SHEET 5 AA2 6 LEU A 45 PHE A 51 -1 O ASP A 46 N LYS A 38 SHEET 6 AA2 6 SER A 58 SER A 60 -1 O ALA A 59 N ALA A 50 SHEET 1 AA3 4 SER A 125 LEU A 129 0 SHEET 2 AA3 4 MET A 140 TYR A 150 -1 O LEU A 146 N TYR A 127 SHEET 3 AA3 4 LEU A 179 PRO A 189 -1 O VAL A 186 N LEU A 143 SHEET 4 AA3 4 VAL A 168 THR A 170 -1 N HIS A 169 O SER A 185 SHEET 1 AA4 4 SER A 125 LEU A 129 0 SHEET 2 AA4 4 MET A 140 TYR A 150 -1 O LEU A 146 N TYR A 127 SHEET 3 AA4 4 LEU A 179 PRO A 189 -1 O VAL A 186 N LEU A 143 SHEET 4 AA4 4 VAL A 174 GLN A 176 -1 N VAL A 174 O THR A 181 SHEET 1 AA5 3 THR A 156 TRP A 159 0 SHEET 2 AA5 3 THR A 199 HIS A 204 -1 O ASN A 201 N THR A 158 SHEET 3 AA5 3 THR A 209 LYS A 214 -1 O VAL A 211 N VAL A 202 SHEET 1 AA6 4 MET B 4 THR B 7 0 SHEET 2 AA6 4 ALA B 19 SER B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA6 4 ASP B 75 ILE B 80 -1 O LEU B 78 N ILE B 21 SHEET 4 AA6 4 PHE B 67 SER B 72 -1 N SER B 70 O THR B 77 SHEET 1 AA7 6 SER B 10 SER B 14 0 SHEET 2 AA7 6 THR B 107 LYS B 112 1 O LYS B 108 N LEU B 11 SHEET 3 AA7 6 GLY B 89 GLN B 95 -1 N GLY B 89 O LEU B 109 SHEET 4 AA7 6 LEU B 38 GLN B 43 -1 N GLU B 39 O PHE B 94 SHEET 5 AA7 6 LYS B 50 TYR B 54 -1 O ILE B 53 N TRP B 40 SHEET 6 AA7 6 ARG B 58 ARG B 59 -1 O ARG B 58 N TYR B 54 SHEET 1 AA8 4 SER B 10 SER B 14 0 SHEET 2 AA8 4 THR B 107 LYS B 112 1 O LYS B 108 N LEU B 11 SHEET 3 AA8 4 GLY B 89 GLN B 95 -1 N GLY B 89 O LEU B 109 SHEET 4 AA8 4 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 SHEET 1 AA9 4 THR B 119 PHE B 123 0 SHEET 2 AA9 4 GLY B 134 PHE B 144 -1 O PHE B 140 N SER B 121 SHEET 3 AA9 4 TYR B 178 THR B 187 -1 O LEU B 186 N ALA B 135 SHEET 4 AA9 4 VAL B 164 TRP B 168 -1 N SER B 167 O SER B 181 SHEET 1 AB1 4 SER B 158 ARG B 160 0 SHEET 2 AB1 4 ASN B 150 ILE B 155 -1 N ILE B 155 O SER B 158 SHEET 3 AB1 4 SER B 196 HIS B 203 -1 O GLU B 200 N LYS B 152 SHEET 4 AB1 4 SER B 206 ASN B 215 -1 O ILE B 210 N ALA B 201 SHEET 1 AB2 4 GLN D 3 LEU D 5 0 SHEET 2 AB2 4 VAL D 18 SER D 25 -1 O LYS D 23 N LEU D 5 SHEET 3 AB2 4 THR D 78 LEU D 83 -1 O MET D 81 N LEU D 20 SHEET 4 AB2 4 ALA D 68 ASP D 73 -1 N ASP D 73 O THR D 78 SHEET 1 AB3 6 ALA D 9 VAL D 12 0 SHEET 2 AB3 6 THR D 112 VAL D 116 1 O THR D 115 N VAL D 12 SHEET 3 AB3 6 ALA D 92 LEU D 99 -1 N ALA D 92 O VAL D 114 SHEET 4 AB3 6 GLU D 33 GLN D 39 -1 N VAL D 37 O TYR D 95 SHEET 5 AB3 6 LEU D 45 PHE D 51 -1 O ASP D 46 N LYS D 38 SHEET 6 AB3 6 SER D 58 SER D 60 -1 O ALA D 59 N ALA D 50 SHEET 1 AB4 4 SER D 125 LEU D 129 0 SHEET 2 AB4 4 VAL D 141 TYR D 150 -1 O LEU D 146 N TYR D 127 SHEET 3 AB4 4 LEU D 179 VAL D 188 -1 O TYR D 180 N TYR D 150 SHEET 4 AB4 4 VAL D 168 THR D 170 -1 N HIS D 169 O SER D 185 SHEET 1 AB5 4 SER D 125 LEU D 129 0 SHEET 2 AB5 4 VAL D 141 TYR D 150 -1 O LEU D 146 N TYR D 127 SHEET 3 AB5 4 LEU D 179 VAL D 188 -1 O TYR D 180 N TYR D 150 SHEET 4 AB5 4 VAL D 174 GLN D 176 -1 N GLN D 176 O LEU D 179 SHEET 1 AB6 3 THR D 156 TRP D 159 0 SHEET 2 AB6 3 THR D 199 HIS D 204 -1 O ASN D 201 N THR D 158 SHEET 3 AB6 3 THR D 209 LYS D 214 -1 O VAL D 211 N VAL D 202 SHEET 1 AB7 4 MET H 4 THR H 7 0 SHEET 2 AB7 4 ALA H 19 SER H 25 -1 O ARG H 24 N THR H 5 SHEET 3 AB7 4 ASP H 75 ILE H 80 -1 O PHE H 76 N CYS H 23 SHEET 4 AB7 4 PHE H 67 SER H 72 -1 N SER H 72 O ASP H 75 SHEET 1 AB8 6 SER H 10 SER H 14 0 SHEET 2 AB8 6 THR H 107 LYS H 112 1 O LYS H 108 N LEU H 11 SHEET 3 AB8 6 GLY H 89 GLN H 95 -1 N GLY H 89 O LEU H 109 SHEET 4 AB8 6 LEU H 38 GLN H 43 -1 N GLU H 39 O PHE H 94 SHEET 5 AB8 6 LYS H 50 TYR H 54 -1 O LYS H 50 N LEU H 42 SHEET 6 AB8 6 ARG H 58 ARG H 59 -1 O ARG H 58 N TYR H 54 SHEET 1 AB9 4 SER H 10 SER H 14 0 SHEET 2 AB9 4 THR H 107 LYS H 112 1 O LYS H 108 N LEU H 11 SHEET 3 AB9 4 GLY H 89 GLN H 95 -1 N GLY H 89 O LEU H 109 SHEET 4 AB9 4 THR H 102 PHE H 103 -1 O THR H 102 N GLN H 95 SHEET 1 AC1 4 THR H 119 PHE H 123 0 SHEET 2 AC1 4 GLY H 134 PHE H 144 -1 O PHE H 140 N SER H 121 SHEET 3 AC1 4 TYR H 178 THR H 187 -1 O LEU H 186 N ALA H 135 SHEET 4 AC1 4 VAL H 164 TRP H 168 -1 N LEU H 165 O THR H 183 SHEET 1 AC2 4 SER H 158 ARG H 160 0 SHEET 2 AC2 4 ILE H 149 ILE H 155 -1 N TRP H 153 O ARG H 160 SHEET 3 AC2 4 SER H 196 HIS H 203 -1 O GLU H 200 N LYS H 152 SHEET 4 AC2 4 SER H 206 ASN H 215 -1 O ILE H 210 N ALA H 201 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.02 SSBOND 2 CYS A 145 CYS A 200 1555 1555 2.04 SSBOND 3 CYS B 23 CYS B 93 1555 1555 2.04 SSBOND 4 CYS B 139 CYS B 199 1555 1555 2.04 SSBOND 5 CYS D 22 CYS D 96 1555 1555 2.04 SSBOND 6 CYS D 145 CYS D 200 1555 1555 2.03 SSBOND 7 CYS H 23 CYS H 93 1555 1555 2.03 SSBOND 8 CYS H 139 CYS H 199 1555 1555 1.99 CISPEP 1 PHE A 151 PRO A 152 0 -3.39 CISPEP 2 GLU A 153 PRO A 154 0 -3.73 CISPEP 3 TRP A 193 PRO A 194 0 1.87 CISPEP 4 THR B 7 PRO B 8 0 -3.36 CISPEP 5 VAL B 99 PRO B 100 0 4.37 CISPEP 6 TYR B 145 PRO B 146 0 3.92 CISPEP 7 PHE D 151 PRO D 152 0 -2.26 CISPEP 8 GLU D 153 PRO D 154 0 -3.73 CISPEP 9 TRP D 193 PRO D 194 0 2.83 CISPEP 10 THR H 7 PRO H 8 0 -2.52 CISPEP 11 VAL H 99 PRO H 100 0 3.10 CISPEP 12 TYR H 145 PRO H 146 0 2.64 CRYST1 68.628 70.526 93.292 90.00 94.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014571 0.000000 0.001221 0.00000 SCALE2 0.000000 0.014179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010757 0.00000