HEADER LYASE/LYASE INHIBITOR 09-MAY-20 6WX3 TITLE HIGH RESOLUTION TRYPTOPHAN SYNTHASE CRYSTAL STRUCTURE FROM SALMONELLA TITLE 2 TYPHIMURIUM IN COMPLEX WITH F9 INHIBITOR IN THE ALPHA-SITE, CESIUM TITLE 3 ION AT THE METAL COORDINATION SITE AND INTERNAL ALDIMINE FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHAN SYNTHASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.20; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRYPTOPHAN SYNTHASE BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 EC: 4.2.1.20; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_COMMON: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 4 TYPHIMURIUM; SOURCE 5 ORGANISM_TAXID: 90371; SOURCE 6 GENE: TRPA, DD95_04145; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: CB149; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PBR322; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEBA-10; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 14 TYPHIMURIUM; SOURCE 15 ORGANISM_COMMON: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 16 TYPHIMURIUM; SOURCE 17 ORGANISM_TAXID: 90371; SOURCE 18 GENE: TRPB; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: CB149; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PBR322; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PEBA-10 KEYWDS LYASE-INHIBITOR, PROTEIN COMPLEX, LYASE, LYASE-LYASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.HILARIO,M.F.DUNN,L.J.MUELLER,L.FAN REVDAT 2 18-OCT-23 6WX3 1 REMARK REVDAT 1 10-MAR-21 6WX3 0 JRNL AUTH E.HILARIO,L.FAN,M.F.DUNN,L.J.MUELLER JRNL TITL HIGH RESOLUTION TRYPTOPHAN SYNTHASE CRYSTAL STRUCTURE FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM IN COMPLEX WITH F9 INHIBITOR IN THE JRNL TITL 3 ALPHA-SITE, CESIUM ION AT THE METAL COORDINATION SITE AND JRNL TITL 4 INTERNAL ALDIMINE FORM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 202430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 10452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14368 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 727 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 827 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : -1.67000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5562 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7584 ; 1.352 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 6.221 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 277 ;34.151 ;22.166 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 936 ;12.299 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;18.168 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 719 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4343 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5562 ; 6.129 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6WX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 212937 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 90.735 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.97500 REMARK 200 R SYM FOR SHELL (I) : 0.97500 REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.02, DM 7.0.078 REMARK 200 STARTING MODEL: 4HT3 REMARK 200 REMARK 200 REMARK: LARGE PLATE-LIKE CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BICINE-CSOH, 10% PEG 8,000, 2 MM REMARK 280 SPERMINE, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.05900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.05900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -217.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1508 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1883 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1973 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LEU B 391 REMARK 465 LYS B 392 REMARK 465 ALA B 393 REMARK 465 ARG B 394 REMARK 465 GLY B 395 REMARK 465 GLU B 396 REMARK 465 ILE B 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CL CL A 302 O HOH A 612 1.94 REMARK 500 O HOH B 1701 O HOH B 1960 1.97 REMARK 500 NH1 ARG B 222 O HOH B 1501 2.12 REMARK 500 O HOH B 1507 O HOH B 1516 2.14 REMARK 500 ND2 ASN A 108 O HOH A 401 2.15 REMARK 500 O CYS B 62 O HOH B 1502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 212 118.27 97.00 REMARK 500 ALA B 269 62.26 -117.56 REMARK 500 LEU B 304 30.92 -99.55 REMARK 500 PHE B 306 127.42 -38.78 REMARK 500 SER B 308 -157.02 -149.37 REMARK 500 SER B 308 -157.02 -128.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1999 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B2000 DISTANCE = 7.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B1410 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 66 O REMARK 620 2 THR B 66 OG1 61.9 REMARK 620 3 THR B 69 O 72.9 128.4 REMARK 620 4 THR B 71 O 88.5 66.7 89.5 REMARK 620 5 HOH B1621 O 82.3 57.2 140.6 120.6 REMARK 620 6 HOH B1672 O 73.9 112.7 74.5 159.0 69.3 REMARK 620 7 HOH B1849 O 143.6 132.9 74.9 74.5 134.1 113.1 REMARK 620 8 HOH B1873 O 150.5 88.6 132.2 78.1 82.2 122.8 57.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B1402 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 231 O REMARK 620 2 GLY B 232 O 69.1 REMARK 620 3 GLU B 256 OE2 106.2 150.5 REMARK 620 4 GLY B 268 O 96.0 134.4 74.2 REMARK 620 5 SER B 308 O 134.9 65.8 111.7 117.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B1402 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 232 O REMARK 620 2 GLY B 268 O 151.5 REMARK 620 3 PHE B 306 O 85.0 119.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F9F A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS B 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCN B 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCN B 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCN B 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCN B 1406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 1408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS B 1410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HT3 RELATED DB: PDB REMARK 900 INTERNAL ALDIMINE FORM REMARK 900 RELATED ID: 4XUG RELATED DB: PDB REMARK 900 INTERNAL ALDIMINE FORM DBREF1 6WX3 A 1 268 UNP A0A0D6FWC1_SALTM DBREF2 6WX3 A A0A0D6FWC1 1 268 DBREF 6WX3 B 1 397 UNP P0A2K1 TRPB_SALTY 1 397 SEQRES 1 A 268 MET GLU ARG TYR GLU ASN LEU PHE ALA GLN LEU ASN ASP SEQRES 2 A 268 ARG ARG GLU GLY ALA PHE VAL PRO PHE VAL THR LEU GLY SEQRES 3 A 268 ASP PRO GLY ILE GLU GLN SER LEU LYS ILE ILE ASP THR SEQRES 4 A 268 LEU ILE ASP ALA GLY ALA ASP ALA LEU GLU LEU GLY VAL SEQRES 5 A 268 PRO PHE SER ASP PRO LEU ALA ASP GLY PRO THR ILE GLN SEQRES 6 A 268 ASN ALA ASN LEU ARG ALA PHE ALA ALA GLY VAL THR PRO SEQRES 7 A 268 ALA GLN CYS PHE GLU MET LEU ALA LEU ILE ARG GLU LYS SEQRES 8 A 268 HIS PRO THR ILE PRO ILE GLY LEU LEU MET TYR ALA ASN SEQRES 9 A 268 LEU VAL PHE ASN ASN GLY ILE ASP ALA PHE TYR ALA ARG SEQRES 10 A 268 CYS GLU GLN VAL GLY VAL ASP SER VAL LEU VAL ALA ASP SEQRES 11 A 268 VAL PRO VAL GLU GLU SER ALA PRO PHE ARG GLN ALA ALA SEQRES 12 A 268 LEU ARG HIS ASN ILE ALA PRO ILE PHE ILE CYS PRO PRO SEQRES 13 A 268 ASN ALA ASP ASP ASP LEU LEU ARG GLN VAL ALA SER TYR SEQRES 14 A 268 GLY ARG GLY TYR THR TYR LEU LEU SER ARG SER GLY VAL SEQRES 15 A 268 THR GLY ALA GLU ASN ARG GLY ALA LEU PRO LEU HIS HIS SEQRES 16 A 268 LEU ILE GLU LYS LEU LYS GLU TYR HIS ALA ALA PRO ALA SEQRES 17 A 268 LEU GLN GLY PHE GLY ILE SER SER PRO GLU GLN VAL SER SEQRES 18 A 268 ALA ALA VAL ARG ALA GLY ALA ALA GLY ALA ILE SER GLY SEQRES 19 A 268 SER ALA ILE VAL LYS ILE ILE GLU LYS ASN LEU ALA SER SEQRES 20 A 268 PRO LYS GLN MET LEU ALA GLU LEU ARG SER PHE VAL SER SEQRES 21 A 268 ALA MET LYS ALA ALA SER ARG ALA SEQRES 1 B 397 MET THR THR LEU LEU ASN PRO TYR PHE GLY GLU PHE GLY SEQRES 2 B 397 GLY MET TYR VAL PRO GLN ILE LEU MET PRO ALA LEU ASN SEQRES 3 B 397 GLN LEU GLU GLU ALA PHE VAL SER ALA GLN LYS ASP PRO SEQRES 4 B 397 GLU PHE GLN ALA GLN PHE ALA ASP LEU LEU LYS ASN TYR SEQRES 5 B 397 ALA GLY ARG PRO THR ALA LEU THR LYS CYS GLN ASN ILE SEQRES 6 B 397 THR ALA GLY THR ARG THR THR LEU TYR LEU LYS ARG GLU SEQRES 7 B 397 ASP LEU LEU HIS GLY GLY ALA HIS LYS THR ASN GLN VAL SEQRES 8 B 397 LEU GLY GLN ALA LEU LEU ALA LYS ARG MET GLY LYS SER SEQRES 9 B 397 GLU ILE ILE ALA GLU THR GLY ALA GLY GLN HIS GLY VAL SEQRES 10 B 397 ALA SER ALA LEU ALA SER ALA LEU LEU GLY LEU LYS CYS SEQRES 11 B 397 ARG ILE TYR MET GLY ALA LYS ASP VAL GLU ARG GLN SER SEQRES 12 B 397 PRO ASN VAL PHE ARG MET ARG LEU MET GLY ALA GLU VAL SEQRES 13 B 397 ILE PRO VAL HIS SER GLY SER ALA THR LEU LYS ASP ALA SEQRES 14 B 397 CYS ASN GLU ALA LEU ARG ASP TRP SER GLY SER TYR GLU SEQRES 15 B 397 THR ALA HIS TYR MET LEU GLY THR ALA ALA GLY PRO HIS SEQRES 16 B 397 PRO TYR PRO THR ILE VAL ARG GLU PHE GLN ARG MET ILE SEQRES 17 B 397 GLY GLU GLU THR LYS ALA GLN ILE LEU ASP LYS GLU GLY SEQRES 18 B 397 ARG LEU PRO ASP ALA VAL ILE ALA CYS VAL GLY GLY GLY SEQRES 19 B 397 SER ASN ALA ILE GLY MET PHE ALA ASP PHE ILE ASN ASP SEQRES 20 B 397 THR SER VAL GLY LEU ILE GLY VAL GLU PRO GLY GLY HIS SEQRES 21 B 397 GLY ILE GLU THR GLY GLU HIS GLY ALA PRO LEU LYS HIS SEQRES 22 B 397 GLY ARG VAL GLY ILE TYR PHE GLY MET LYS ALA PRO MET SEQRES 23 B 397 MET GLN THR ALA ASP GLY GLN ILE GLU GLU SER TYR SER SEQRES 24 B 397 ILE SER ALA GLY LEU ASP PHE PRO SER VAL GLY PRO GLN SEQRES 25 B 397 HIS ALA TYR LEU ASN SER ILE GLY ARG ALA ASP TYR VAL SEQRES 26 B 397 SER ILE THR ASP ASP GLU ALA LEU GLU ALA PHE LYS THR SEQRES 27 B 397 LEU CYS ARG HIS GLU GLY ILE ILE PRO ALA LEU GLU SER SEQRES 28 B 397 SER HIS ALA LEU ALA HIS ALA LEU LYS MET MET ARG GLU SEQRES 29 B 397 GLN PRO GLU LYS GLU GLN LEU LEU VAL VAL ASN LEU SER SEQRES 30 B 397 GLY ARG GLY ASP LYS ASP ILE PHE THR VAL HIS ASP ILE SEQRES 31 B 397 LEU LYS ALA ARG GLY GLU ILE HET F9F A 301 22 HET CL A 302 1 HET PLP B1401 15 HET CS B1402 2 HET BCN B1403 11 HET BCN B1404 11 HET BCN B1405 11 HET BCN B1406 11 HET EDO B1407 4 HET DMS B1408 4 HET EDO B1409 4 HET CS B1410 1 HETNAM F9F 2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYL HETNAM 2 F9F DIHYDROGEN PHOSPHATE HETNAM CL CHLORIDE ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM CS CESIUM ION HETNAM BCN BICINE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN F9F N-(4'-TRIFLUOROMETHOXYBENZENESULFONYL)-2-AMINO-1- HETSYN 2 F9F ETHYLPHOSPHATE, F9 HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 F9F C9 H11 F3 N O7 P S FORMUL 4 CL CL 1- FORMUL 5 PLP C8 H10 N O6 P FORMUL 6 CS 2(CS 1+) FORMUL 7 BCN 4(C6 H13 N O4) FORMUL 11 EDO 2(C2 H6 O2) FORMUL 12 DMS C2 H6 O S FORMUL 15 HOH *827(H2 O) HELIX 1 AA1 GLU A 2 ARG A 14 1 13 HELIX 2 AA2 GLY A 29 ALA A 43 1 15 HELIX 3 AA3 GLY A 61 ALA A 74 1 14 HELIX 4 AA4 THR A 77 HIS A 92 1 16 HELIX 5 AA5 TYR A 102 ASN A 108 1 7 HELIX 6 AA6 GLY A 110 GLY A 122 1 13 HELIX 7 AA7 PRO A 132 GLU A 135 5 4 HELIX 8 AA8 SER A 136 HIS A 146 1 11 HELIX 9 AA9 ASP A 159 GLY A 170 1 12 HELIX 10 AB1 LEU A 193 TYR A 203 1 11 HELIX 11 AB2 SER A 216 ALA A 226 1 11 HELIX 12 AB3 GLY A 234 ASN A 244 1 11 HELIX 13 AB4 SER A 247 ALA A 265 1 19 HELIX 14 AB5 PRO B 18 ILE B 20 5 3 HELIX 15 AB6 LEU B 21 LYS B 37 1 17 HELIX 16 AB7 ASP B 38 TYR B 52 1 15 HELIX 17 AB8 CYS B 62 ALA B 67 1 6 HELIX 18 AB9 ASP B 79 LEU B 81 5 3 HELIX 19 AC1 HIS B 86 MET B 101 1 16 HELIX 20 AC2 GLY B 113 GLY B 127 1 15 HELIX 21 AC3 ALA B 136 GLN B 142 1 7 HELIX 22 AC4 GLN B 142 MET B 152 1 11 HELIX 23 AC5 THR B 165 TYR B 181 1 17 HELIX 24 AC6 PRO B 196 PHE B 204 1 9 HELIX 25 AC7 ARG B 206 GLY B 221 1 16 HELIX 26 AC8 GLY B 234 ALA B 242 1 9 HELIX 27 AC9 ASP B 243 ILE B 245 5 3 HELIX 28 AD1 GLY B 261 GLY B 265 5 5 HELIX 29 AD2 ALA B 269 GLY B 274 1 6 HELIX 30 AD3 SER B 301 ASP B 305 5 5 HELIX 31 AD4 GLY B 310 ILE B 319 1 10 HELIX 32 AD5 ASP B 329 GLY B 344 1 16 HELIX 33 AD6 ALA B 348 GLN B 365 1 18 HELIX 34 AD7 GLY B 380 LYS B 382 5 3 HELIX 35 AD8 ASP B 383 ILE B 390 1 8 SHEET 1 AA1 9 ALA A 149 PRO A 150 0 SHEET 2 AA1 9 SER A 125 VAL A 128 1 N VAL A 126 O ALA A 149 SHEET 3 AA1 9 ILE A 97 MET A 101 1 N MET A 101 O LEU A 127 SHEET 4 AA1 9 LEU A 48 GLY A 51 1 N LEU A 50 O GLY A 98 SHEET 5 AA1 9 ALA A 18 THR A 24 1 N VAL A 23 O GLY A 51 SHEET 6 AA1 9 GLY A 230 SER A 233 1 O ALA A 231 N VAL A 20 SHEET 7 AA1 9 ALA A 208 GLY A 211 1 N GLN A 210 O ILE A 232 SHEET 8 AA1 9 THR A 174 LEU A 177 1 N LEU A 176 O LEU A 209 SHEET 9 AA1 9 ILE A 153 CYS A 154 1 N CYS A 154 O TYR A 175 SHEET 1 AA2 4 TYR B 8 PHE B 9 0 SHEET 2 AA2 4 PHE B 12 TYR B 16 -1 O PHE B 12 N PHE B 9 SHEET 3 AA2 4 GLY B 281 MET B 286 -1 O LYS B 283 N GLY B 13 SHEET 4 AA2 4 ARG B 275 TYR B 279 -1 N GLY B 277 O ALA B 284 SHEET 1 AA3 6 LEU B 59 LYS B 61 0 SHEET 2 AA3 6 THR B 71 ARG B 77 -1 O LEU B 75 N THR B 60 SHEET 3 AA3 6 GLN B 370 LEU B 376 1 O LEU B 372 N THR B 72 SHEET 4 AA3 6 ALA B 226 CYS B 230 1 N ILE B 228 O ASN B 375 SHEET 5 AA3 6 GLY B 251 GLY B 259 1 O ILE B 253 N VAL B 227 SHEET 6 AA3 6 ASP B 323 THR B 328 1 O ILE B 327 N GLY B 258 SHEET 1 AA4 4 GLU B 155 VAL B 159 0 SHEET 2 AA4 4 LYS B 129 GLY B 135 1 N ILE B 132 O ILE B 157 SHEET 3 AA4 4 GLU B 105 THR B 110 1 N ALA B 108 O TYR B 133 SHEET 4 AA4 4 ALA B 184 TYR B 186 1 O HIS B 185 N GLU B 105 LINK NZ LYS B 87 C4A PLP B1401 1555 1555 1.32 LINK O THR B 66 CS CS B1410 1555 1555 3.22 LINK OG1 THR B 66 CS CS B1410 1555 1555 3.27 LINK O THR B 69 CS CS B1410 1555 1555 3.16 LINK O THR B 71 CS CS B1410 1555 1555 3.02 LINK O VAL B 231 CS B CS B1402 1555 1555 3.30 LINK O GLY B 232 CS A CS B1402 1555 1555 2.96 LINK O GLY B 232 CS B CS B1402 1555 1555 2.95 LINK OE2 GLU B 256 CS B CS B1402 1555 1555 3.29 LINK O GLY B 268 CS A CS B1402 1555 1555 3.06 LINK O GLY B 268 CS B CS B1402 1555 1555 3.37 LINK O APHE B 306 CS A CS B1402 1555 1555 3.15 LINK O SER B 308 CS B CS B1402 1555 1555 3.35 LINK CS CS B1410 O HOH B1621 1555 1555 3.17 LINK CS CS B1410 O HOH B1672 1555 1555 3.48 LINK CS CS B1410 O AHOH B1849 1555 1555 2.88 LINK CS CS B1410 O BHOH B1873 1555 1555 2.95 CISPEP 1 ASP A 27 PRO A 28 0 2.13 CISPEP 2 ARG B 55 PRO B 56 0 -3.36 CISPEP 3 HIS B 195 PRO B 196 0 9.45 SITE 1 AC1 21 PHE A 22 GLU A 49 ALA A 59 ILE A 64 SITE 2 AC1 21 LEU A 100 LEU A 127 ALA A 129 ILE A 153 SITE 3 AC1 21 TYR A 175 THR A 183 GLY A 184 PHE A 212 SITE 4 AC1 21 GLY A 213 ILE A 232 GLY A 234 SER A 235 SITE 5 AC1 21 HOH A 424 HOH A 439 HOH A 525 HOH A 676 SITE 6 AC1 21 PRO B 18 SITE 1 AC2 5 ALA A 167 GLY A 170 HIS A 204 HOH A 491 SITE 2 AC2 5 HOH A 612 SITE 1 AC3 17 HIS B 86 LYS B 87 GLN B 114 THR B 190 SITE 2 AC3 17 CYS B 230 GLY B 232 GLY B 233 GLY B 234 SITE 3 AC3 17 SER B 235 ASN B 236 GLY B 303 GLU B 350 SITE 4 AC3 17 SER B 377 GLY B 378 HOH B1594 HOH B1600 SITE 5 AC3 17 HOH B1646 SITE 1 AC4 8 VAL B 231 GLY B 232 GLU B 256 GLY B 268 SITE 2 AC4 8 PRO B 270 LEU B 304 PHE B 306 SER B 308 SITE 1 AC5 10 GLY B 259 HIS B 260 GLU B 263 THR B 328 SITE 2 AC5 10 ASP B 329 ASP B 330 HOH B1514 HOH B1534 SITE 3 AC5 10 HOH B1643 HOH B1975 SITE 1 AC6 10 THR B 248 VAL B 250 GLY B 251 LEU B 252 SITE 2 AC6 10 GLY B 320 ARG B 321 ASP B 323 HOH B1561 SITE 3 AC6 10 HOH B1563 HOH B1665 SITE 1 AC7 7 THR B 289 ALA B 290 ASP B 291 GLN B 293 SITE 2 AC7 7 HOH B1568 HOH B1725 HOH B1769 SITE 1 AC8 11 LEU B 271 LYS B 272 GLY B 274 PRO B 285 SITE 2 AC8 11 ARG B 363 GLU B 364 HOH B1599 HOH B1701 SITE 3 AC8 11 HOH B1732 HOH B1756 HOH B1960 SITE 1 AC9 6 ASP B 225 GLU B 369 GLN B 370 HOH B1561 SITE 2 AC9 6 HOH B1628 HOH B1630 SITE 1 AD1 1 GLY B 10 SITE 1 AD2 1 THR B 3 SITE 1 AD3 5 THR B 66 THR B 69 THR B 71 HOH B1849 SITE 2 AD3 5 HOH B1873 CRYST1 182.118 59.060 67.405 90.00 94.84 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005491 0.000000 0.000465 0.00000 SCALE2 0.000000 0.016932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014889 0.00000