HEADER NUCLEAR PROTEIN 10-MAY-20 6WX8 TITLE SOX2 BOUND TO IMPORTIN-ALPHA 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMPORTIN SUBUNIT ALPHA-3; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: IMPORTIN ALPHA Q1,QIP1,KARYOPHERIN SUBUNIT ALPHA-4; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTION FACTOR SOX-2; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KPNA4, QIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOX2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BIKSHAPATHI,M.STEWART,J.K.FORWOOD,D.ARAGAO,N.ROMAN REVDAT 4 25-OCT-23 6WX8 1 REMARK REVDAT 3 29-MAR-23 6WX8 1 AUTHOR REVDAT 2 20-JAN-21 6WX8 1 JRNL REVDAT 1 28-OCT-20 6WX8 0 JRNL AUTH B.JAGGA,M.EDWARDS,M.PAGIN,K.M.WAGSTAFF,D.ARAGAO,N.ROMAN, JRNL AUTH 2 J.D.NANSON,S.R.RAIDAL,N.DOMINADO,M.STEWART,D.A.JANS, JRNL AUTH 3 G.R.HIME,S.K.NICOLIS,C.F.BASLER,J.K.FORWOOD JRNL TITL STRUCTURAL BASIS FOR NUCLEAR IMPORT SELECTIVITY OF PIONEER JRNL TITL 2 TRANSCRIPTION FACTOR SOX2. JRNL REF NAT COMMUN V. 12 28 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33397924 JRNL DOI 10.1038/S41467-020-20194-0 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 52545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 2747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7500 - 6.2300 0.99 2744 167 0.1709 0.1733 REMARK 3 2 6.2300 - 4.9500 1.00 2698 173 0.2101 0.2445 REMARK 3 3 4.9500 - 4.3300 1.00 2695 150 0.1828 0.2025 REMARK 3 4 4.3300 - 3.9300 1.00 2729 142 0.1743 0.1997 REMARK 3 5 3.9300 - 3.6500 1.00 2693 158 0.1873 0.2165 REMARK 3 6 3.6500 - 3.4300 1.00 2701 148 0.2189 0.2357 REMARK 3 7 3.4300 - 3.2600 1.00 2707 145 0.2300 0.2720 REMARK 3 8 3.2600 - 3.1200 1.00 2684 150 0.2365 0.3081 REMARK 3 9 3.1200 - 3.0000 1.00 2702 143 0.2523 0.2855 REMARK 3 10 3.0000 - 2.9000 1.00 2680 147 0.2475 0.2784 REMARK 3 11 2.9000 - 2.8100 1.00 2707 144 0.2538 0.3011 REMARK 3 12 2.8100 - 2.7300 1.00 2661 172 0.2721 0.3034 REMARK 3 13 2.7300 - 2.6600 1.00 2703 145 0.2793 0.3255 REMARK 3 14 2.6600 - 2.5900 1.00 2694 150 0.3125 0.3343 REMARK 3 15 2.5900 - 2.5300 1.00 2716 126 0.3151 0.3310 REMARK 3 16 2.5300 - 2.4800 0.99 2660 158 0.3329 0.3834 REMARK 3 17 2.4800 - 2.4300 0.88 2389 121 0.3337 0.3531 REMARK 3 18 2.4300 - 2.3800 0.72 1953 91 0.3254 0.3244 REMARK 3 19 2.3800 - 2.3400 0.55 1481 85 0.3138 0.3011 REMARK 3 20 2.3400 - 2.3000 0.29 801 32 0.2971 0.3697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8031 REMARK 3 ANGLE : 0.494 10923 REMARK 3 CHIRALITY : 0.037 1272 REMARK 3 PLANARITY : 0.004 1414 REMARK 3 DIHEDRAL : 15.300 3007 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6BW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M (NH4)2SO4, 0.1M HEPES PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 780 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 63 REMARK 465 GLY A 64 REMARK 465 ASP A 65 REMARK 465 TYR A 66 REMARK 465 SER A 486 REMARK 465 SER A 487 REMARK 465 ASP A 488 REMARK 465 ASP A 489 REMARK 465 ILE A 490 REMARK 465 ASP A 491 REMARK 465 GLU A 492 REMARK 465 ASP A 493 REMARK 465 PRO A 494 REMARK 465 SER A 495 REMARK 465 LEU A 496 REMARK 465 VAL A 497 REMARK 465 PRO A 498 REMARK 465 GLU A 499 REMARK 465 ALA A 500 REMARK 465 ILE A 501 REMARK 465 GLN A 502 REMARK 465 GLY A 503 REMARK 465 GLY A 504 REMARK 465 THR A 505 REMARK 465 PHE A 506 REMARK 465 GLY A 507 REMARK 465 PHE A 508 REMARK 465 ASN A 509 REMARK 465 SER A 510 REMARK 465 SER A 511 REMARK 465 ALA A 512 REMARK 465 ASN A 513 REMARK 465 VAL A 514 REMARK 465 PRO A 515 REMARK 465 THR A 516 REMARK 465 GLU A 517 REMARK 465 GLY A 518 REMARK 465 PHE A 519 REMARK 465 GLN A 520 REMARK 465 PHE A 521 REMARK 465 SER B 38 REMARK 465 LYS B 121 REMARK 465 LYS B 122 REMARK 465 ASP B 123 REMARK 465 LYS B 124 REMARK 465 TYR B 125 REMARK 465 THR B 126 REMARK 465 LEU B 127 REMARK 465 SER C 63 REMARK 465 GLY C 64 REMARK 465 ASP C 65 REMARK 465 TYR C 66 REMARK 465 ARG C 67 REMARK 465 VAL C 68 REMARK 465 GLN C 69 REMARK 465 SER C 487 REMARK 465 ASP C 488 REMARK 465 ASP C 489 REMARK 465 ILE C 490 REMARK 465 ASP C 491 REMARK 465 GLU C 492 REMARK 465 ASP C 493 REMARK 465 PRO C 494 REMARK 465 SER C 495 REMARK 465 LEU C 496 REMARK 465 VAL C 497 REMARK 465 PRO C 498 REMARK 465 GLU C 499 REMARK 465 ALA C 500 REMARK 465 ILE C 501 REMARK 465 GLN C 502 REMARK 465 GLY C 503 REMARK 465 GLY C 504 REMARK 465 THR C 505 REMARK 465 PHE C 506 REMARK 465 GLY C 507 REMARK 465 PHE C 508 REMARK 465 ASN C 509 REMARK 465 SER C 510 REMARK 465 SER C 511 REMARK 465 ALA C 512 REMARK 465 ASN C 513 REMARK 465 VAL C 514 REMARK 465 PRO C 515 REMARK 465 THR C 516 REMARK 465 GLU C 517 REMARK 465 GLY C 518 REMARK 465 PHE C 519 REMARK 465 GLN C 520 REMARK 465 PHE C 521 REMARK 465 SER D 38 REMARK 465 ASP D 39 REMARK 465 LYS D 121 REMARK 465 LYS D 122 REMARK 465 ASP D 123 REMARK 465 LYS D 124 REMARK 465 TYR D 125 REMARK 465 THR D 126 REMARK 465 LEU D 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 378 -60.33 -95.00 REMARK 500 LYS C 379 41.49 -109.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 780 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH C 696 DISTANCE = 8.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 DBREF 6WX8 A 64 521 UNP O00629 IMA3_HUMAN 64 521 DBREF 6WX8 B 39 127 UNP P48431 SOX2_HUMAN 39 127 DBREF 6WX8 C 64 521 UNP O00629 IMA3_HUMAN 64 521 DBREF 6WX8 D 39 127 UNP P48431 SOX2_HUMAN 39 127 SEQADV 6WX8 SER A 63 UNP O00629 EXPRESSION TAG SEQADV 6WX8 SER B 38 UNP P48431 EXPRESSION TAG SEQADV 6WX8 SER C 63 UNP O00629 EXPRESSION TAG SEQADV 6WX8 SER D 38 UNP P48431 EXPRESSION TAG SEQRES 1 A 459 SER GLY ASP TYR ARG VAL GLN ASN THR SER LEU GLU ALA SEQRES 2 A 459 ILE VAL GLN ASN ALA SER SER ASP ASN GLN GLY ILE GLN SEQRES 3 A 459 LEU SER ALA VAL GLN ALA ALA ARG LYS LEU LEU SER SER SEQRES 4 A 459 ASP ARG ASN PRO PRO ILE ASP ASP LEU ILE LYS SER GLY SEQRES 5 A 459 ILE LEU PRO ILE LEU VAL HIS CYS LEU GLU ARG ASP ASP SEQRES 6 A 459 ASN PRO SER LEU GLN PHE GLU ALA ALA TRP ALA LEU THR SEQRES 7 A 459 ASN ILE ALA SER GLY THR SER GLU GLN THR GLN ALA VAL SEQRES 8 A 459 VAL GLN SER ASN ALA VAL PRO LEU PHE LEU ARG LEU LEU SEQRES 9 A 459 HIS SER PRO HIS GLN ASN VAL CYS GLU GLN ALA VAL TRP SEQRES 10 A 459 ALA LEU GLY ASN ILE ILE GLY ASP GLY PRO GLN CYS ARG SEQRES 11 A 459 ASP TYR VAL ILE SER LEU GLY VAL VAL LYS PRO LEU LEU SEQRES 12 A 459 SER PHE ILE SER PRO SER ILE PRO ILE THR PHE LEU ARG SEQRES 13 A 459 ASN VAL THR TRP VAL MET VAL ASN LEU CYS ARG HIS LYS SEQRES 14 A 459 ASP PRO PRO PRO PRO MET GLU THR ILE GLN GLU ILE LEU SEQRES 15 A 459 PRO ALA LEU CYS VAL LEU ILE HIS HIS THR ASP VAL ASN SEQRES 16 A 459 ILE LEU VAL ASP THR VAL TRP ALA LEU SER TYR LEU THR SEQRES 17 A 459 ASP ALA GLY ASN GLU GLN ILE GLN MET VAL ILE ASP SER SEQRES 18 A 459 GLY ILE VAL PRO HIS LEU VAL PRO LEU LEU SER HIS GLN SEQRES 19 A 459 GLU VAL LYS VAL GLN THR ALA ALA LEU ARG ALA VAL GLY SEQRES 20 A 459 ASN ILE VAL THR GLY THR ASP GLU GLN THR GLN VAL VAL SEQRES 21 A 459 LEU ASN CYS ASP ALA LEU SER HIS PHE PRO ALA LEU LEU SEQRES 22 A 459 THR HIS PRO LYS GLU LYS ILE ASN LYS GLU ALA VAL TRP SEQRES 23 A 459 PHE LEU SER ASN ILE THR ALA GLY ASN GLN GLN GLN VAL SEQRES 24 A 459 GLN ALA VAL ILE ASP ALA ASN LEU VAL PRO MET ILE ILE SEQRES 25 A 459 HIS LEU LEU ASP LYS GLY ASP PHE GLY THR GLN LYS GLU SEQRES 26 A 459 ALA ALA TRP ALA ILE SER ASN LEU THR ILE SER GLY ARG SEQRES 27 A 459 LYS ASP GLN VAL ALA TYR LEU ILE GLN GLN ASN VAL ILE SEQRES 28 A 459 PRO PRO PHE CYS ASN LEU LEU THR VAL LYS ASP ALA GLN SEQRES 29 A 459 VAL VAL GLN VAL VAL LEU ASP GLY LEU SER ASN ILE LEU SEQRES 30 A 459 LYS MET ALA GLU ASP GLU ALA GLU THR ILE GLY ASN LEU SEQRES 31 A 459 ILE GLU GLU CYS GLY GLY LEU GLU LYS ILE GLU GLN LEU SEQRES 32 A 459 GLN ASN HIS GLU ASN GLU ASP ILE TYR LYS LEU ALA TYR SEQRES 33 A 459 GLU ILE ILE ASP GLN PHE PHE SER SER ASP ASP ILE ASP SEQRES 34 A 459 GLU ASP PRO SER LEU VAL PRO GLU ALA ILE GLN GLY GLY SEQRES 35 A 459 THR PHE GLY PHE ASN SER SER ALA ASN VAL PRO THR GLU SEQRES 36 A 459 GLY PHE GLN PHE SEQRES 1 B 90 SER ASP ARG VAL LYS ARG PRO MET ASN ALA PHE MET VAL SEQRES 2 B 90 TRP SER ARG GLY GLN ARG ARG LYS MET ALA GLN GLU ASN SEQRES 3 B 90 PRO LYS MET HIS ASN SER GLU ILE SER LYS ARG LEU GLY SEQRES 4 B 90 ALA GLU TRP LYS LEU LEU SER GLU THR GLU LYS ARG PRO SEQRES 5 B 90 PHE ILE ASP GLU ALA LYS ARG LEU ARG ALA LEU HIS MET SEQRES 6 B 90 LYS GLU HIS PRO ASP TYR LYS TYR ARG PRO ARG ARG LYS SEQRES 7 B 90 THR LYS THR LEU MET LYS LYS ASP LYS TYR THR LEU SEQRES 1 C 459 SER GLY ASP TYR ARG VAL GLN ASN THR SER LEU GLU ALA SEQRES 2 C 459 ILE VAL GLN ASN ALA SER SER ASP ASN GLN GLY ILE GLN SEQRES 3 C 459 LEU SER ALA VAL GLN ALA ALA ARG LYS LEU LEU SER SER SEQRES 4 C 459 ASP ARG ASN PRO PRO ILE ASP ASP LEU ILE LYS SER GLY SEQRES 5 C 459 ILE LEU PRO ILE LEU VAL HIS CYS LEU GLU ARG ASP ASP SEQRES 6 C 459 ASN PRO SER LEU GLN PHE GLU ALA ALA TRP ALA LEU THR SEQRES 7 C 459 ASN ILE ALA SER GLY THR SER GLU GLN THR GLN ALA VAL SEQRES 8 C 459 VAL GLN SER ASN ALA VAL PRO LEU PHE LEU ARG LEU LEU SEQRES 9 C 459 HIS SER PRO HIS GLN ASN VAL CYS GLU GLN ALA VAL TRP SEQRES 10 C 459 ALA LEU GLY ASN ILE ILE GLY ASP GLY PRO GLN CYS ARG SEQRES 11 C 459 ASP TYR VAL ILE SER LEU GLY VAL VAL LYS PRO LEU LEU SEQRES 12 C 459 SER PHE ILE SER PRO SER ILE PRO ILE THR PHE LEU ARG SEQRES 13 C 459 ASN VAL THR TRP VAL MET VAL ASN LEU CYS ARG HIS LYS SEQRES 14 C 459 ASP PRO PRO PRO PRO MET GLU THR ILE GLN GLU ILE LEU SEQRES 15 C 459 PRO ALA LEU CYS VAL LEU ILE HIS HIS THR ASP VAL ASN SEQRES 16 C 459 ILE LEU VAL ASP THR VAL TRP ALA LEU SER TYR LEU THR SEQRES 17 C 459 ASP ALA GLY ASN GLU GLN ILE GLN MET VAL ILE ASP SER SEQRES 18 C 459 GLY ILE VAL PRO HIS LEU VAL PRO LEU LEU SER HIS GLN SEQRES 19 C 459 GLU VAL LYS VAL GLN THR ALA ALA LEU ARG ALA VAL GLY SEQRES 20 C 459 ASN ILE VAL THR GLY THR ASP GLU GLN THR GLN VAL VAL SEQRES 21 C 459 LEU ASN CYS ASP ALA LEU SER HIS PHE PRO ALA LEU LEU SEQRES 22 C 459 THR HIS PRO LYS GLU LYS ILE ASN LYS GLU ALA VAL TRP SEQRES 23 C 459 PHE LEU SER ASN ILE THR ALA GLY ASN GLN GLN GLN VAL SEQRES 24 C 459 GLN ALA VAL ILE ASP ALA ASN LEU VAL PRO MET ILE ILE SEQRES 25 C 459 HIS LEU LEU ASP LYS GLY ASP PHE GLY THR GLN LYS GLU SEQRES 26 C 459 ALA ALA TRP ALA ILE SER ASN LEU THR ILE SER GLY ARG SEQRES 27 C 459 LYS ASP GLN VAL ALA TYR LEU ILE GLN GLN ASN VAL ILE SEQRES 28 C 459 PRO PRO PHE CYS ASN LEU LEU THR VAL LYS ASP ALA GLN SEQRES 29 C 459 VAL VAL GLN VAL VAL LEU ASP GLY LEU SER ASN ILE LEU SEQRES 30 C 459 LYS MET ALA GLU ASP GLU ALA GLU THR ILE GLY ASN LEU SEQRES 31 C 459 ILE GLU GLU CYS GLY GLY LEU GLU LYS ILE GLU GLN LEU SEQRES 32 C 459 GLN ASN HIS GLU ASN GLU ASP ILE TYR LYS LEU ALA TYR SEQRES 33 C 459 GLU ILE ILE ASP GLN PHE PHE SER SER ASP ASP ILE ASP SEQRES 34 C 459 GLU ASP PRO SER LEU VAL PRO GLU ALA ILE GLN GLY GLY SEQRES 35 C 459 THR PHE GLY PHE ASN SER SER ALA ASN VAL PRO THR GLU SEQRES 36 C 459 GLY PHE GLN PHE SEQRES 1 D 90 SER ASP ARG VAL LYS ARG PRO MET ASN ALA PHE MET VAL SEQRES 2 D 90 TRP SER ARG GLY GLN ARG ARG LYS MET ALA GLN GLU ASN SEQRES 3 D 90 PRO LYS MET HIS ASN SER GLU ILE SER LYS ARG LEU GLY SEQRES 4 D 90 ALA GLU TRP LYS LEU LEU SER GLU THR GLU LYS ARG PRO SEQRES 5 D 90 PHE ILE ASP GLU ALA LYS ARG LEU ARG ALA LEU HIS MET SEQRES 6 D 90 LYS GLU HIS PRO ASP TYR LYS TYR ARG PRO ARG ARG LYS SEQRES 7 D 90 THR LYS THR LEU MET LYS LYS ASP LYS TYR THR LEU HET SO4 A 601 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 D 201 5 HET SO4 D 202 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 HOH *227(H2 O) HELIX 1 AA1 SER A 72 SER A 81 1 10 HELIX 2 AA2 ASN A 84 SER A 101 1 18 HELIX 3 AA3 PRO A 106 SER A 113 1 8 HELIX 4 AA4 ILE A 115 LEU A 123 1 9 HELIX 5 AA5 ASN A 128 SER A 144 1 17 HELIX 6 AA6 THR A 146 SER A 156 1 11 HELIX 7 AA7 ALA A 158 LEU A 166 1 9 HELIX 8 AA8 HIS A 170 GLY A 186 1 17 HELIX 9 AA9 GLY A 188 GLY A 199 1 12 HELIX 10 AB1 VAL A 200 PHE A 207 1 8 HELIX 11 AB2 PRO A 213 CYS A 228 1 16 HELIX 12 AB3 PRO A 236 ILE A 251 1 16 HELIX 13 AB4 ASP A 255 ASP A 271 1 17 HELIX 14 AB5 GLY A 273 SER A 283 1 11 HELIX 15 AB6 ILE A 285 VAL A 290 1 6 HELIX 16 AB7 PRO A 291 HIS A 295 5 5 HELIX 17 AB8 GLU A 297 VAL A 312 1 16 HELIX 18 AB9 THR A 315 CYS A 325 1 11 HELIX 19 AC1 ASP A 326 SER A 329 5 4 HELIX 20 AC2 HIS A 330 THR A 336 1 7 HELIX 21 AC3 LYS A 339 ALA A 355 1 17 HELIX 22 AC4 ASN A 357 ALA A 367 1 11 HELIX 23 AC5 LEU A 369 ASP A 378 1 10 HELIX 24 AC6 ASP A 381 GLY A 399 1 19 HELIX 25 AC7 ARG A 400 GLN A 410 1 11 HELIX 26 AC8 VAL A 412 LEU A 419 1 8 HELIX 27 AC9 LEU A 420 VAL A 422 5 3 HELIX 28 AD1 ASP A 424 ALA A 442 1 19 HELIX 29 AD2 GLU A 445 CYS A 456 1 12 HELIX 30 AD3 GLY A 457 LEU A 465 1 9 HELIX 31 AD4 GLN A 466 HIS A 468 5 3 HELIX 32 AD5 ASN A 470 PHE A 485 1 16 HELIX 33 AD6 ASN B 46 ASN B 63 1 18 HELIX 34 AD7 HIS B 67 LYS B 80 1 14 HELIX 35 AD8 SER B 83 GLU B 104 1 22 HELIX 36 AD9 ASP B 107 ARG B 111 5 5 HELIX 37 AE1 THR C 71 SER C 81 1 11 HELIX 38 AE2 ASN C 84 SER C 101 1 18 HELIX 39 AE3 PRO C 106 SER C 113 1 8 HELIX 40 AE4 ILE C 115 GLU C 124 1 10 HELIX 41 AE5 ASN C 128 SER C 144 1 17 HELIX 42 AE6 THR C 146 SER C 156 1 11 HELIX 43 AE7 ALA C 158 LEU C 166 1 9 HELIX 44 AE8 HIS C 170 GLY C 186 1 17 HELIX 45 AE9 GLY C 188 GLY C 199 1 12 HELIX 46 AF1 VAL C 200 PHE C 207 1 8 HELIX 47 AF2 PRO C 213 CYS C 228 1 16 HELIX 48 AF3 PRO C 236 ILE C 251 1 16 HELIX 49 AF4 ASP C 255 ASP C 271 1 17 HELIX 50 AF5 GLY C 273 SER C 283 1 11 HELIX 51 AF6 ILE C 285 VAL C 290 1 6 HELIX 52 AF7 PRO C 291 HIS C 295 5 5 HELIX 53 AF8 GLU C 297 VAL C 312 1 16 HELIX 54 AF9 THR C 315 CYS C 325 1 11 HELIX 55 AG1 ASP C 326 SER C 329 5 4 HELIX 56 AG2 HIS C 330 THR C 336 1 7 HELIX 57 AG3 LYS C 339 ALA C 355 1 17 HELIX 58 AG4 ASN C 357 ALA C 367 1 11 HELIX 59 AG5 LEU C 369 GLY C 380 1 12 HELIX 60 AG6 ASP C 381 GLY C 399 1 19 HELIX 61 AG7 ARG C 400 GLN C 410 1 11 HELIX 62 AG8 VAL C 412 LEU C 419 1 8 HELIX 63 AG9 LEU C 420 VAL C 422 5 3 HELIX 64 AH1 ASP C 424 ALA C 442 1 19 HELIX 65 AH2 GLU C 445 CYS C 456 1 12 HELIX 66 AH3 GLY C 457 LEU C 465 1 9 HELIX 67 AH4 GLN C 466 HIS C 468 5 3 HELIX 68 AH5 ASN C 470 PHE C 485 1 16 HELIX 69 AH6 ASN D 46 ASN D 63 1 18 HELIX 70 AH7 HIS D 67 LYS D 80 1 14 HELIX 71 AH8 SER D 83 GLU D 104 1 22 CISPEP 1 ASP A 232 PRO A 233 0 -1.02 CISPEP 2 ARG B 43 PRO B 44 0 0.05 CISPEP 3 ASP C 232 PRO C 233 0 -1.94 CISPEP 4 ARG D 43 PRO D 44 0 0.72 SITE 1 AC1 4 THR A 71 SER A 72 LEU A 73 GLU A 74 SITE 1 AC2 4 ARG A 229 ARG B 111 ARG B 113 ARG B 114 SITE 1 AC3 2 LYS A 231 ARG B 98 SITE 1 AC4 5 ARG C 229 ARG D 111 ARG D 113 ARG D 114 SITE 2 AC4 5 HOH D 308 SITE 1 AC5 5 ARG C 229 HIS C 230 LYS C 231 ASP C 232 SITE 2 AC5 5 ARG D 98 CRYST1 148.580 118.990 94.870 90.00 128.77 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006730 0.000000 0.005406 0.00000 SCALE2 0.000000 0.008404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013520 0.00000