HEADER METAL BINDING PROTEIN 13-MAY-20 6WZ3 TITLE CU-BOUND STRUCTURE OF THE ENGINEERED PROTEIN TRIMER, TRICYT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CYTOCHROME B-562; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOUR-HELIX BUNDLE, METALLOPROTEIN TRIMER, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.A.TEZCAN,A.KAKKIS REVDAT 4 20-NOV-24 6WZ3 1 REMARK REVDAT 3 18-OCT-23 6WZ3 1 REMARK REVDAT 2 16-DEC-20 6WZ3 1 JRNL REVDAT 1 16-SEP-20 6WZ3 0 JRNL AUTH A.KAKKIS,D.GAGNON,J.ESSELBORN,R.D.BRITT,F.A.TEZCAN JRNL TITL METAL-TEMPLATED DESIGN OF CHEMICALLY SWITCHABLE PROTEIN JRNL TITL 2 ASSEMBLIES WITH HIGH-AFFINITY COORDINATION SITES. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 59 21940 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 32830423 JRNL DOI 10.1002/ANIE.202009226 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 61197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.210 REMARK 3 FREE R VALUE TEST SET COUNT : 3803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1817 - 5.3956 0.98 2185 153 0.1547 0.1651 REMARK 3 2 5.3956 - 4.2844 0.99 2235 117 0.1639 0.2110 REMARK 3 3 4.2844 - 3.7433 0.92 2044 134 0.1536 0.2133 REMARK 3 4 3.7433 - 3.4013 0.99 2246 143 0.1562 0.2141 REMARK 3 5 3.4013 - 3.1576 0.99 2205 153 0.1630 0.2282 REMARK 3 6 3.1576 - 2.9715 0.99 2242 122 0.1761 0.1902 REMARK 3 7 2.9715 - 2.8227 0.93 2056 157 0.1757 0.2384 REMARK 3 8 2.8227 - 2.6999 0.91 2023 138 0.1861 0.2046 REMARK 3 9 2.6999 - 2.5960 0.97 2221 155 0.1864 0.2555 REMARK 3 10 2.5960 - 2.5064 0.99 2218 152 0.1957 0.2762 REMARK 3 11 2.5064 - 2.4280 0.99 2217 171 0.1950 0.1927 REMARK 3 12 2.4280 - 2.3586 0.99 2168 121 0.2060 0.2946 REMARK 3 13 2.3586 - 2.2966 0.97 2247 106 0.2025 0.2377 REMARK 3 14 2.2966 - 2.2405 0.81 1786 118 0.2468 0.3452 REMARK 3 15 2.2405 - 2.1896 0.93 2100 168 0.1994 0.2829 REMARK 3 16 2.1896 - 2.1430 0.96 2151 132 0.1919 0.2114 REMARK 3 17 2.1430 - 2.1001 0.97 2147 123 0.2102 0.2316 REMARK 3 18 2.1001 - 2.0605 0.96 2140 172 0.2608 0.3381 REMARK 3 19 2.0605 - 2.0237 0.97 2117 133 0.2296 0.2364 REMARK 3 20 2.0237 - 1.9894 0.98 2277 150 0.2317 0.2706 REMARK 3 21 1.9894 - 1.9573 0.85 1846 141 0.2446 0.3537 REMARK 3 22 1.9573 - 1.9272 0.89 2024 126 0.2849 0.2653 REMARK 3 23 1.9272 - 1.8989 0.90 2006 142 0.3702 0.4128 REMARK 3 24 1.8989 - 1.8721 0.94 2120 137 0.2985 0.4118 REMARK 3 25 1.8721 - 1.8468 0.95 2099 153 0.2479 0.2694 REMARK 3 26 1.8468 - 1.8228 0.95 2068 172 0.2509 0.3141 REMARK 3 27 1.8228 - 1.8001 0.96 2206 114 0.2667 0.3166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2782 REMARK 3 ANGLE : 0.801 3787 REMARK 3 CHIRALITY : 0.042 388 REMARK 3 PLANARITY : 0.004 488 REMARK 3 DIHEDRAL : 27.581 1091 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.485500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61197 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.182 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03397 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28150 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG1500, 0.2 M MGCL2, 0.1 M BIS REMARK 280 -TRIS (PH 5.5), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.22350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.60250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.22350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.60250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL C 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 399 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 377 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 331 O HOH C 385 2.04 REMARK 500 O HOH C 398 O HOH C 403 2.04 REMARK 500 O ASP A 21 O HOH A 301 2.10 REMARK 500 OG SER A 52 O HOH A 302 2.13 REMARK 500 O HOH C 334 O HOH C 368 2.14 REMARK 500 OG SER C 52 O HOH C 301 2.15 REMARK 500 O HOH B 375 O HOH B 393 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 405 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 SD REMARK 620 2 HEC A 201 NA 87.8 REMARK 620 3 HEC A 201 NB 85.3 88.2 REMARK 620 4 HEC A 201 NC 90.5 177.8 90.2 REMARK 620 5 HEC A 201 ND 91.2 91.3 176.5 90.1 REMARK 620 6 HIS A 102 NE2 172.0 89.9 87.0 91.6 96.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 206 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 73 NE2 REMARK 620 2 HIS A 77 NE2 77.7 REMARK 620 3 HIS B 73 NE2 97.7 96.0 REMARK 620 4 HIS B 77 NE2 163.5 86.7 78.4 REMARK 620 5 HIS C 73 NE2 95.5 162.6 100.9 100.9 REMARK 620 6 HIS C 77 NE2 98.3 88.8 164.0 86.7 76.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 7 SD REMARK 620 2 HEC B 201 NA 86.7 REMARK 620 3 HEC B 201 NB 86.3 87.3 REMARK 620 4 HEC B 201 NC 91.8 178.5 92.3 REMARK 620 5 HEC B 201 ND 90.5 91.4 176.6 88.9 REMARK 620 6 HIS B 102 NE2 171.0 89.7 85.3 91.7 97.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 7 SD REMARK 620 2 HEC C 201 NA 87.6 REMARK 620 3 HEC C 201 NB 87.0 88.7 REMARK 620 4 HEC C 201 NC 91.5 177.8 89.3 REMARK 620 5 HEC C 201 ND 90.3 92.6 177.0 89.4 REMARK 620 6 HIS C 102 NE2 174.3 90.1 87.7 90.6 95.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 98 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC C 201 and CYS C REMARK 800 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC C 201 and CYS C REMARK 800 98 DBREF 6WZ3 A 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 6WZ3 B 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 6WZ3 C 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 6WZ3 LYS A 31 UNP P0ABE7 THR 53 ENGINEERED MUTATION SEQADV 6WZ3 LYS A 35 UNP P0ABE7 ALA 57 ENGINEERED MUTATION SEQADV 6WZ3 LYS A 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 6WZ3 ALA A 54 UNP P0ABE7 ASP 76 ENGINEERED MUTATION SEQADV 6WZ3 ILE A 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 6WZ3 VAL A 63 UNP P0ABE7 HIS 85 ENGINEERED MUTATION SEQADV 6WZ3 GLU A 67 UNP P0ABE7 ILE 89 ENGINEERED MUTATION SEQADV 6WZ3 ALA A 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 6WZ3 TRP A 70 UNP P0ABE7 GLY 92 ENGINEERED MUTATION SEQADV 6WZ3 GLU A 71 UNP P0ABE7 GLN 93 ENGINEERED MUTATION SEQADV 6WZ3 HIS A 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 6WZ3 ALA A 76 UNP P0ABE7 LEU 98 ENGINEERED MUTATION SEQADV 6WZ3 HIS A 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 6WZ3 LYS A 80 UNP P0ABE7 ASN 102 ENGINEERED MUTATION SEQADV 6WZ3 CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 6WZ3 CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 6WZ3 LYS B 31 UNP P0ABE7 THR 53 ENGINEERED MUTATION SEQADV 6WZ3 LYS B 35 UNP P0ABE7 ALA 57 ENGINEERED MUTATION SEQADV 6WZ3 LYS B 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 6WZ3 ALA B 54 UNP P0ABE7 ASP 76 ENGINEERED MUTATION SEQADV 6WZ3 ILE B 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 6WZ3 VAL B 63 UNP P0ABE7 HIS 85 ENGINEERED MUTATION SEQADV 6WZ3 GLU B 67 UNP P0ABE7 ILE 89 ENGINEERED MUTATION SEQADV 6WZ3 ALA B 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 6WZ3 TRP B 70 UNP P0ABE7 GLY 92 ENGINEERED MUTATION SEQADV 6WZ3 GLU B 71 UNP P0ABE7 GLN 93 ENGINEERED MUTATION SEQADV 6WZ3 HIS B 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 6WZ3 ALA B 76 UNP P0ABE7 LEU 98 ENGINEERED MUTATION SEQADV 6WZ3 HIS B 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 6WZ3 LYS B 80 UNP P0ABE7 ASN 102 ENGINEERED MUTATION SEQADV 6WZ3 CYS B 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 6WZ3 CYS B 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 6WZ3 LYS C 31 UNP P0ABE7 THR 53 ENGINEERED MUTATION SEQADV 6WZ3 LYS C 35 UNP P0ABE7 ALA 57 ENGINEERED MUTATION SEQADV 6WZ3 LYS C 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 6WZ3 ALA C 54 UNP P0ABE7 ASP 76 ENGINEERED MUTATION SEQADV 6WZ3 ILE C 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 6WZ3 VAL C 63 UNP P0ABE7 HIS 85 ENGINEERED MUTATION SEQADV 6WZ3 GLU C 67 UNP P0ABE7 ILE 89 ENGINEERED MUTATION SEQADV 6WZ3 ALA C 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 6WZ3 TRP C 70 UNP P0ABE7 GLY 92 ENGINEERED MUTATION SEQADV 6WZ3 GLU C 71 UNP P0ABE7 GLN 93 ENGINEERED MUTATION SEQADV 6WZ3 HIS C 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 6WZ3 ALA C 76 UNP P0ABE7 LEU 98 ENGINEERED MUTATION SEQADV 6WZ3 HIS C 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 6WZ3 LYS C 80 UNP P0ABE7 ASN 102 ENGINEERED MUTATION SEQADV 6WZ3 CYS C 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 6WZ3 CYS C 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU LYS LYS MET ARG LYS ALA ALA LEU ASP SEQRES 4 A 106 ALA LYS LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ALA SER PRO GLU MET ILE ASP PHE ARG VAL GLY PHE SEQRES 6 A 106 ASP GLU LEU ALA TRP GLU ILE HIS ASP ALA ALA HIS LEU SEQRES 7 A 106 ALA LYS GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 A 106 TYR ARG SEQRES 1 B 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 B 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 B 106 LYS ASP ALA LEU LYS LYS MET ARG LYS ALA ALA LEU ASP SEQRES 4 B 106 ALA LYS LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 106 PRO ALA SER PRO GLU MET ILE ASP PHE ARG VAL GLY PHE SEQRES 6 B 106 ASP GLU LEU ALA TRP GLU ILE HIS ASP ALA ALA HIS LEU SEQRES 7 B 106 ALA LYS GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 B 106 TYR ARG SEQRES 1 C 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 C 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 C 106 LYS ASP ALA LEU LYS LYS MET ARG LYS ALA ALA LEU ASP SEQRES 4 C 106 ALA LYS LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 C 106 PRO ALA SER PRO GLU MET ILE ASP PHE ARG VAL GLY PHE SEQRES 6 C 106 ASP GLU LEU ALA TRP GLU ILE HIS ASP ALA ALA HIS LEU SEQRES 7 C 106 ALA LYS GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 C 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 C 106 TYR ARG HET HEC A 201 43 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET CU A 206 1 HET HEC B 201 43 HET CL B 202 1 HET PEG B 203 17 HET HEC C 201 43 HET CL C 202 1 HET CL C 203 1 HETNAM HEC HEME C HETNAM CL CHLORIDE ION HETNAM CU COPPER (II) ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 HEC 3(C34 H34 FE N4 O4) FORMUL 5 CL 7(CL 1-) FORMUL 9 CU CU 2+ FORMUL 12 PEG C4 H10 O3 FORMUL 16 HOH *306(H2 O) HELIX 1 AA1 ASP A 2 ALA A 20 1 19 HELIX 2 AA2 ASN A 22 LYS A 41 1 20 HELIX 3 AA3 PRO A 45 GLU A 49 5 5 HELIX 4 AA4 SER A 55 GLU A 81 1 27 HELIX 5 AA5 LYS A 83 LEU A 94 1 12 HELIX 6 AA6 LEU A 94 ARG A 106 1 13 HELIX 7 AA7 ASP B 2 ALA B 20 1 19 HELIX 8 AA8 ASN B 22 LYS B 41 1 20 HELIX 9 AA9 PRO B 45 GLU B 49 5 5 HELIX 10 AB1 SER B 55 GLU B 81 1 27 HELIX 11 AB2 LYS B 83 LEU B 94 1 12 HELIX 12 AB3 LEU B 94 ARG B 106 1 13 HELIX 13 AB4 ASP C 2 ALA C 20 1 19 HELIX 14 AB5 ASN C 22 LYS C 41 1 20 HELIX 15 AB6 PRO C 45 GLU C 49 5 5 HELIX 16 AB7 SER C 55 GLU C 81 1 27 HELIX 17 AB8 LYS C 83 LEU C 94 1 12 HELIX 18 AB9 LEU C 94 ARG C 106 1 13 LINK SG CYS A 98 CAB HEC A 201 1555 1555 1.77 LINK SG CYS A 101 CAC HEC A 201 1555 1555 1.78 LINK SG CYS B 98 CAB HEC B 201 1555 1555 1.77 LINK SG CYS B 101 CAC HEC B 201 1555 1555 1.77 LINK SG CYS C 98 CAB HEC C 201 1555 1555 1.77 LINK SG CYS C 101 CAC HEC C 201 1555 1555 1.78 LINK SD MET A 7 FE HEC A 201 1555 1555 2.44 LINK NE2 HIS A 73 CU CU A 206 1555 1555 2.14 LINK NE2 HIS A 77 CU CU A 206 1555 1555 2.34 LINK NE2 HIS A 102 FE HEC A 201 1555 1555 2.18 LINK CU CU A 206 NE2 HIS B 73 1555 1555 2.18 LINK CU CU A 206 NE2 HIS B 77 1555 1555 2.36 LINK CU CU A 206 NE2 HIS C 73 1555 1555 2.12 LINK CU CU A 206 NE2 HIS C 77 1555 1555 2.28 LINK SD MET B 7 FE HEC B 201 1555 1555 2.43 LINK NE2 HIS B 102 FE HEC B 201 1555 1555 2.17 LINK SD MET C 7 FE HEC C 201 1555 1555 2.42 LINK NE2 HIS C 102 FE HEC C 201 1555 1555 2.20 SITE 1 AC1 16 MET A 7 PRO A 45 PRO A 46 PHE A 61 SITE 2 AC1 16 PHE A 65 CYS A 98 CYS A 101 HIS A 102 SITE 3 AC1 16 TYR A 105 ARG A 106 CL A 205 HOH A 304 SITE 4 AC1 16 HOH A 308 HOH A 314 HOH A 317 HEC B 201 SITE 1 AC2 3 ARG A 62 ARG B 62 ARG C 62 SITE 1 AC3 4 LYS A 41 LYS B 41 LYS C 41 HOH C 370 SITE 1 AC4 3 ARG A 34 HIS A 73 ALA A 76 SITE 1 AC5 4 ARG A 106 HEC A 201 ARG B 106 HEC B 201 SITE 1 AC6 6 HIS A 73 HIS A 77 HIS B 73 HIS B 77 SITE 2 AC6 6 HIS C 73 HIS C 77 SITE 1 AC7 3 ARG B 34 HIS B 73 ALA B 76 SITE 1 AC8 10 ASN B 22 ALA B 23 ALA B 24 VAL B 84 SITE 2 AC8 10 HOH B 302 HOH B 304 ASN C 22 ALA C 23 SITE 3 AC8 10 ALA C 24 VAL C 84 SITE 1 AC9 3 ARG C 34 HIS C 73 ALA C 76 SITE 1 AD1 2 ARG C 106 HEC C 201 SITE 1 AD2 18 HEC A 201 CL A 205 GLU B 4 MET B 7 SITE 2 AD2 18 PRO B 45 PHE B 61 PHE B 65 LEU B 94 SITE 3 AD2 18 LYS B 95 THR B 96 THR B 97 ASN B 99 SITE 4 AD2 18 ALA B 100 CYS B 101 HIS B 102 TYR B 105 SITE 5 AD2 18 ARG B 106 HOH B 305 SITE 1 AD3 17 HEC A 201 CL A 205 GLU B 4 MET B 7 SITE 2 AD3 17 PRO B 45 PHE B 61 PHE B 65 THR B 97 SITE 3 AD3 17 CYS B 98 ASN B 99 ALA B 100 HIS B 102 SITE 4 AD3 17 GLN B 103 LYS B 104 TYR B 105 ARG B 106 SITE 5 AD3 17 HOH B 305 SITE 1 AD4 20 GLU C 4 MET C 7 GLU C 8 LEU C 14 SITE 2 AD4 20 PRO C 45 PRO C 46 PHE C 61 PHE C 65 SITE 3 AD4 20 THR C 97 CYS C 98 ASN C 99 ALA C 100 SITE 4 AD4 20 HIS C 102 GLN C 103 LYS C 104 TYR C 105 SITE 5 AD4 20 ARG C 106 CL C 203 HOH C 303 HOH C 305 SITE 1 AD5 21 GLU C 4 MET C 7 GLU C 8 LEU C 14 SITE 2 AD5 21 PRO C 45 PRO C 46 PHE C 61 PHE C 65 SITE 3 AD5 21 LEU C 94 LYS C 95 THR C 96 THR C 97 SITE 4 AD5 21 ASN C 99 ALA C 100 CYS C 101 HIS C 102 SITE 5 AD5 21 TYR C 105 ARG C 106 CL C 203 HOH C 303 SITE 6 AD5 21 HOH C 305 CRYST1 78.447 81.205 56.431 90.00 92.92 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012747 0.000000 0.000651 0.00000 SCALE2 0.000000 0.012315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017744 0.00000