HEADER SIGNALING PROTEIN/HYDROLASE 18-MAY-20 6X1G TITLE CRYSTAL STRUCTURE OF A GEF DOMAIN FROM THE ORIENTIA TSUTSUGAMUSHI TITLE 2 PROTEIN OTDUB IN COMPLEX WITH RAC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ULP_PROTEASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: GEF DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: RAC1, CELL MIGRATION-INDUCING GENE 5 PROTEIN,RAS-LIKE COMPND 10 PROTEIN TC25,P21-RAC1; COMPND 11 EC: 3.6.5.2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORIENTIA TSUTSUGAMUSHI; SOURCE 3 ORGANISM_COMMON: RICKETTSIA TSUTSUGAMUSHI; SOURCE 4 ORGANISM_TAXID: 334380; SOURCE 5 STRAIN: IKEDA; SOURCE 6 GENE: OTT_1962; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: RAC1, TC25, MIG5; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GUANINE NUCLEOTIDE EXCHANGE FACTOR, GEF, RAC1, GTPASE, ORIENTIA KEYWDS 2 TSUTSUGAMUSHI, SCRUB TYPHUS, SIGNALING PROTEIN, SIGNALING PROTEIN- KEYWDS 3 HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.LIM,Y.XIONG REVDAT 3 18-OCT-23 6X1G 1 REMARK REVDAT 2 16-DEC-20 6X1G 1 JRNL REVDAT 1 25-NOV-20 6X1G 0 JRNL AUTH C.LIM,J.M.BERK,A.BLAISE,J.BIRCHER,A.J.KOLESKE, JRNL AUTH 2 M.HOCHSTRASSER,Y.XIONG JRNL TITL CRYSTAL STRUCTURE OF A GUANINE NUCLEOTIDE EXCHANGE FACTOR JRNL TITL 2 ENCODED BY THE SCRUB TYPHUS PATHOGEN ORIENTIA TSUTSUGAMUSHI JRNL TITL 3 . JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 30380 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33184172 JRNL DOI 10.1073/PNAS.2018163117 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.5 REMARK 3 NUMBER OF REFLECTIONS : 87425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4663 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6162 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 318 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6266 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : -0.05000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.743 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6380 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6042 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8616 ; 1.808 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14084 ; 1.517 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 784 ; 6.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 324 ;34.414 ;23.827 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1192 ;14.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.482 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 834 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7018 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1232 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 547 762 C 547 762 6976 0.090 0.050 REMARK 3 2 B 1 178 D 1 178 5654 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 547 A 762 REMARK 3 ORIGIN FOR THE GROUP (A): 21.108 26.984 45.848 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.0974 REMARK 3 T33: 0.0377 T12: -0.0345 REMARK 3 T13: -0.0037 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.2043 L22: 1.1698 REMARK 3 L33: 0.9931 L12: -0.5996 REMARK 3 L13: 0.0936 L23: -0.0319 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.0570 S13: 0.1574 REMARK 3 S21: 0.1722 S22: -0.0253 S23: -0.0803 REMARK 3 S31: -0.0626 S32: 0.0275 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 548 C 762 REMARK 3 ORIGIN FOR THE GROUP (A): -3.940 3.601 -14.250 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.1012 REMARK 3 T33: 0.0265 T12: 0.0137 REMARK 3 T13: 0.0051 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.0151 L22: 1.0721 REMARK 3 L33: 0.8538 L12: 0.3874 REMARK 3 L13: 0.0024 L23: 0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: 0.0548 S13: -0.1322 REMARK 3 S21: -0.1463 S22: -0.0243 S23: -0.0385 REMARK 3 S31: 0.0529 S32: 0.0082 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 178 REMARK 3 ORIGIN FOR THE GROUP (A): 19.725 16.192 25.161 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0996 REMARK 3 T33: 0.0278 T12: -0.0112 REMARK 3 T13: 0.0223 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.3790 L22: 0.7194 REMARK 3 L33: 1.7851 L12: 0.0554 REMARK 3 L13: -0.1288 L23: 0.5170 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0182 S13: 0.0094 REMARK 3 S21: -0.0829 S22: -0.0452 S23: -0.0315 REMARK 3 S31: 0.1201 S32: 0.0079 S33: 0.0671 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 178 REMARK 3 ORIGIN FOR THE GROUP (A): -5.278 14.438 6.336 REMARK 3 T TENSOR REMARK 3 T11: 0.0657 T22: 0.1004 REMARK 3 T33: 0.0237 T12: -0.0086 REMARK 3 T13: -0.0095 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.4997 L22: 0.6832 REMARK 3 L33: 1.7136 L12: -0.1423 REMARK 3 L13: 0.1325 L23: 0.4783 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0190 S13: 0.0027 REMARK 3 S21: 0.0876 S22: -0.0320 S23: -0.0434 REMARK 3 S31: -0.1136 S32: -0.0034 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 801 A 871 REMARK 3 RESIDUE RANGE : B 202 B 274 REMARK 3 RESIDUE RANGE : C 901 C 987 REMARK 3 RESIDUE RANGE : D 202 D 278 REMARK 3 ORIGIN FOR THE GROUP (A): 4.171 14.368 13.910 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0552 REMARK 3 T33: 0.0064 T12: -0.0093 REMARK 3 T13: 0.0059 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0854 L22: 0.0560 REMARK 3 L33: 0.2439 L12: 0.0164 REMARK 3 L13: 0.1147 L23: 0.0827 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0048 S13: 0.0161 REMARK 3 S21: -0.0038 S22: -0.0345 S23: 0.0090 REMARK 3 S31: -0.0074 S32: -0.0198 S33: 0.0339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6X1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.7 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.73100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FOE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM CHES PH 9.5, 25% (W/V) PEG 8000, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 763 REMARK 465 HIS A 764 REMARK 465 HIS A 765 REMARK 465 HIS C 763 REMARK 465 HIS C 764 REMARK 465 HIS C 765 REMARK 465 HIS B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS D 179 REMARK 465 HIS D 180 REMARK 465 HIS D 181 REMARK 465 HIS D 182 REMARK 465 HIS D 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 68 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG D 68 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG D 68 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 585 95.30 -163.90 REMARK 500 ASP C 585 95.37 -163.17 REMARK 500 LYS B 96 -61.89 -126.63 REMARK 500 GLN D 74 18.56 59.28 REMARK 500 LYS D 96 -58.00 -125.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 923 O REMARK 620 2 HOH C 948 O 85.4 REMARK 620 3 HOH C 972 O 70.5 150.0 REMARK 620 4 HOH C 974 O 147.7 119.9 89.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 801 DBREF 6X1G A 548 759 UNP B3CVM3 B3CVM3_ORITI 548 759 DBREF 6X1G C 548 759 UNP B3CVM3 B3CVM3_ORITI 548 759 DBREF 6X1G B 1 177 UNP P63000 RAC1_HUMAN 1 177 DBREF 6X1G D 1 177 UNP P63000 RAC1_HUMAN 1 177 SEQADV 6X1G MET A 547 UNP B3CVM3 INITIATING METHIONINE SEQADV 6X1G HIS A 760 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS A 761 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS A 762 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS A 763 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS A 764 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS A 765 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G MET C 547 UNP B3CVM3 INITIATING METHIONINE SEQADV 6X1G HIS C 760 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS C 761 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS C 762 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS C 763 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS C 764 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS C 765 UNP B3CVM3 EXPRESSION TAG SEQADV 6X1G HIS B 178 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS B 179 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS B 180 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS B 181 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS B 182 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS B 183 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS D 178 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS D 179 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS D 180 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS D 181 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS D 182 UNP P63000 EXPRESSION TAG SEQADV 6X1G HIS D 183 UNP P63000 EXPRESSION TAG SEQRES 1 A 219 MET GLU ARG LEU VAL LYS LYS VAL THR SER ASN LEU GLU SEQRES 2 A 219 THR GLU LEU LYS PHE PHE LYS GLY ARG LEU VAL GLN GLU SEQRES 3 A 219 LEU MET GLN ILE VAL LYS ASN GLU ASN GLY ARG ILE ASP SEQRES 4 A 219 HIS THR SER LYS ASN TRP GLN GLU SER ALA SER VAL LEU SEQRES 5 A 219 LEU ASN SER GLN GLU LYS GLY ALA VAL SER LEU ALA GLU SEQRES 6 A 219 VAL GLU ARG ALA VAL SER LYS MET THR GLN LYS LEU ARG SEQRES 7 A 219 ASP GLN LYS VAL SER GLU GLU GLU VAL VAL ASN ILE GLU SEQRES 8 A 219 SER LYS LEU LYS PHE GLU ARG ALA SER LEU GLU ALA LYS SEQRES 9 A 219 LEU PHE ASP ASP ASN GLU ILE LYS GLU LEU ILE ASN LYS SEQRES 10 A 219 ARG ILE LYS GLU ASP ALA LEU ARG ALA ILE PRO PHE LEU SEQRES 11 A 219 GLY SER ASP SER GLU SER PHE MET GLU LYS ILE SER PRO SEQRES 12 A 219 PHE VAL LYS LEU PRO ASP ASP SER TYR SER LEU LEU LYS SEQRES 13 A 219 ALA ASN ASP LYS HIS HIS PRO PHE GLN ASN ILE LEU TYR SEQRES 14 A 219 SER ASN ALA LEU LYS PHE PHE ALA ASP SER SER ASP ILE SEQRES 15 A 219 GLY TYR LEU ASN ASP ASP SER LEU LYS ASN LEU THR PRO SEQRES 16 A 219 GLU ASN LEU ASN ALA PHE GLU GLN ALA VAL ALA ALA ASP SEQRES 17 A 219 ILE ASP LYS LEU MET HIS HIS HIS HIS HIS HIS SEQRES 1 C 219 MET GLU ARG LEU VAL LYS LYS VAL THR SER ASN LEU GLU SEQRES 2 C 219 THR GLU LEU LYS PHE PHE LYS GLY ARG LEU VAL GLN GLU SEQRES 3 C 219 LEU MET GLN ILE VAL LYS ASN GLU ASN GLY ARG ILE ASP SEQRES 4 C 219 HIS THR SER LYS ASN TRP GLN GLU SER ALA SER VAL LEU SEQRES 5 C 219 LEU ASN SER GLN GLU LYS GLY ALA VAL SER LEU ALA GLU SEQRES 6 C 219 VAL GLU ARG ALA VAL SER LYS MET THR GLN LYS LEU ARG SEQRES 7 C 219 ASP GLN LYS VAL SER GLU GLU GLU VAL VAL ASN ILE GLU SEQRES 8 C 219 SER LYS LEU LYS PHE GLU ARG ALA SER LEU GLU ALA LYS SEQRES 9 C 219 LEU PHE ASP ASP ASN GLU ILE LYS GLU LEU ILE ASN LYS SEQRES 10 C 219 ARG ILE LYS GLU ASP ALA LEU ARG ALA ILE PRO PHE LEU SEQRES 11 C 219 GLY SER ASP SER GLU SER PHE MET GLU LYS ILE SER PRO SEQRES 12 C 219 PHE VAL LYS LEU PRO ASP ASP SER TYR SER LEU LEU LYS SEQRES 13 C 219 ALA ASN ASP LYS HIS HIS PRO PHE GLN ASN ILE LEU TYR SEQRES 14 C 219 SER ASN ALA LEU LYS PHE PHE ALA ASP SER SER ASP ILE SEQRES 15 C 219 GLY TYR LEU ASN ASP ASP SER LEU LYS ASN LEU THR PRO SEQRES 16 C 219 GLU ASN LEU ASN ALA PHE GLU GLN ALA VAL ALA ALA ASP SEQRES 17 C 219 ILE ASP LYS LEU MET HIS HIS HIS HIS HIS HIS SEQRES 1 B 183 MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 B 183 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 B 183 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 B 183 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 B 183 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 B 183 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 B 183 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 B 183 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 B 183 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 B 183 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 B 183 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 B 183 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 B 183 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 B 183 ASP GLU ALA ILE ARG ALA VAL LEU HIS HIS HIS HIS HIS SEQRES 15 B 183 HIS SEQRES 1 D 183 MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 D 183 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 D 183 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 D 183 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 D 183 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 D 183 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 D 183 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 D 183 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 D 183 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 D 183 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 D 183 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 D 183 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 D 183 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 D 183 ASP GLU ALA ILE ARG ALA VAL LEU HIS HIS HIS HIS HIS SEQRES 15 D 183 HIS HET MG C 801 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG MG 2+ FORMUL 6 HOH *311(H2 O) HELIX 1 AA1 MET A 547 GLU A 580 1 34 HELIX 2 AA2 SER A 588 SER A 601 1 14 HELIX 3 AA3 SER A 608 GLN A 626 1 19 HELIX 4 AA4 SER A 629 LEU A 651 1 23 HELIX 5 AA5 ASP A 653 ILE A 673 1 21 HELIX 6 AA6 ASP A 679 SER A 688 1 10 HELIX 7 AA7 PRO A 689 VAL A 691 5 3 HELIX 8 AA8 ASP A 696 LEU A 701 5 6 HELIX 9 AA9 PRO A 709 ALA A 723 1 15 HELIX 10 AB1 ASN A 732 LEU A 739 5 8 HELIX 11 AB2 THR A 740 HIS A 760 1 21 HELIX 12 AB3 GLU C 548 GLU C 580 1 33 HELIX 13 AB4 SER C 588 SER C 601 1 14 HELIX 14 AB5 SER C 608 GLN C 626 1 19 HELIX 15 AB6 SER C 629 LEU C 651 1 23 HELIX 16 AB7 ASP C 653 ILE C 673 1 21 HELIX 17 AB8 ASP C 679 SER C 688 1 10 HELIX 18 AB9 PRO C 689 VAL C 691 5 3 HELIX 19 AC1 ASP C 696 LEU C 701 5 6 HELIX 20 AC2 PRO C 709 ALA C 723 1 15 HELIX 21 AC3 ASN C 732 LEU C 739 5 8 HELIX 22 AC4 THR C 740 HIS C 760 1 21 HELIX 23 AC5 GLY B 12 VAL B 14 5 3 HELIX 24 AC6 GLY B 15 ASN B 26 1 12 HELIX 25 AC7 GLN B 61 ASP B 65 5 5 HELIX 26 AC8 LEU B 67 TYR B 72 5 6 HELIX 27 AC9 SER B 86 LYS B 96 1 11 HELIX 28 AD1 LYS B 96 CYS B 105 1 10 HELIX 29 AD2 LYS B 116 ARG B 120 5 5 HELIX 30 AD3 ASP B 122 GLU B 131 1 10 HELIX 31 AD4 THR B 138 GLY B 150 1 13 HELIX 32 AD5 GLY B 164 HIS B 178 1 15 HELIX 33 AD6 GLY D 15 ASN D 26 1 12 HELIX 34 AD7 GLN D 61 ASP D 65 5 5 HELIX 35 AD8 LEU D 67 TYR D 72 5 6 HELIX 36 AD9 SER D 86 LYS D 96 1 11 HELIX 37 AE1 LYS D 96 CYS D 105 1 10 HELIX 38 AE2 LYS D 116 ARG D 120 5 5 HELIX 39 AE3 ASP D 122 GLU D 131 1 10 HELIX 40 AE4 THR D 138 GLY D 150 1 13 HELIX 41 AE5 GLY D 164 HIS D 178 1 15 SHEET 1 AA1 6 ALA B 42 VAL B 46 0 SHEET 2 AA1 6 LYS B 49 ASP B 57 -1 O LEU B 53 N ALA B 42 SHEET 3 AA1 6 ALA B 3 GLY B 10 1 N ILE B 4 O GLY B 54 SHEET 4 AA1 6 VAL B 77 SER B 83 1 O CYS B 81 N VAL B 9 SHEET 5 AA1 6 ILE B 110 THR B 115 1 O ILE B 111 N PHE B 78 SHEET 6 AA1 6 LYS B 153 GLU B 156 1 O LEU B 155 N LEU B 112 SHEET 1 AA2 6 ALA D 42 VAL D 46 0 SHEET 2 AA2 6 LYS D 49 ASP D 57 -1 O LEU D 53 N ALA D 42 SHEET 3 AA2 6 ALA D 3 GLY D 10 1 N ILE D 4 O GLY D 54 SHEET 4 AA2 6 VAL D 77 SER D 83 1 O CYS D 81 N VAL D 9 SHEET 5 AA2 6 ILE D 110 THR D 115 1 O THR D 115 N PHE D 82 SHEET 6 AA2 6 LYS D 153 GLU D 156 1 O LEU D 155 N GLY D 114 LINK MG MG C 801 O HOH C 923 1555 1555 2.24 LINK MG MG C 801 O HOH C 948 1555 1555 2.71 LINK MG MG C 801 O HOH C 972 1555 1555 2.25 LINK MG MG C 801 O HOH C 974 1555 1555 2.26 SITE 1 AC1 4 HOH C 923 HOH C 948 HOH C 972 HOH C 974 CRYST1 50.063 54.160 94.004 83.37 76.34 62.52 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019975 -0.010391 -0.004776 0.00000 SCALE2 0.000000 0.020813 -0.000157 0.00000 SCALE3 0.000000 0.000000 0.010948 0.00000