HEADER MEMBRANE PROTEIN 19-MAY-20 6X1K TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED TMB2.3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED TRANSMEMBRANE BETA-BARREL TMB2.3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO DESIGN, BETA-BARREL, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.LIANG,A.A.VOROBIEVA,C.M.CHOW,D.BAKER,L.K.TAMM REVDAT 4 15-MAY-24 6X1K 1 REMARK REVDAT 3 14-JUN-23 6X1K 1 REMARK REVDAT 2 03-MAR-21 6X1K 1 JRNL REVDAT 1 17-FEB-21 6X1K 0 JRNL AUTH A.A.VOROBIEVA,P.WHITE,B.LIANG,J.E.HORNE,A.K.BERA,C.M.CHOW, JRNL AUTH 2 S.GERBEN,S.MARX,A.KANG,A.Q.STIVING,S.R.HARVEY,D.C.MARX, JRNL AUTH 3 G.N.KHAN,K.G.FLEMING,V.H.WYSOCKI,D.J.BROCKWELL,L.K.TAMM, JRNL AUTH 4 S.E.RADFORD,D.BAKER JRNL TITL DE NOVO DESIGN OF TRANSMEMBRANE BETA BARRELS. JRNL REF SCIENCE V. 371 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 33602829 JRNL DOI 10.1126/SCIENCE.ABC8182 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249389. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.8 MM [U-98% 13C; U-98% 15N, U REMARK 210 -98% 2H] TMB2.3, 200 MM DPC, 10 REMARK 210 MM HEPES, 10 MM MES, 10 MM REMARK 210 SODIUM ACETATE, 50 MM SODIUM REMARK 210 CHLORIDE, 0.05 % W/V SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D HNCO; 3D HN(CA)CO; 3D REMARK 210 HSQC-NOESY-HSQC; 3D NOESY-TROSY; REMARK 210 1H-15N HETNOE; 1D PROTON REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, HMSIST, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 77 HG1 THR A 81 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 2 -42.93 -160.89 REMARK 500 1 ASP A 3 77.36 -64.54 REMARK 500 1 PRO A 5 150.62 -47.78 REMARK 500 1 ASN A 20 47.59 71.68 REMARK 500 1 TYR A 35 -79.07 -82.57 REMARK 500 1 ASN A 46 78.33 44.17 REMARK 500 1 SER A 47 66.85 -177.17 REMARK 500 1 SER A 48 178.07 56.69 REMARK 500 1 LEU A 49 -171.35 47.02 REMARK 500 1 VAL A 62 -44.97 -137.78 REMARK 500 1 PRO A 64 -13.77 -42.76 REMARK 500 1 ASP A 65 70.74 167.47 REMARK 500 1 VAL A 94 -74.05 -105.07 REMARK 500 1 ASN A 107 128.51 -172.87 REMARK 500 1 ASN A 108 -167.77 43.15 REMARK 500 1 SER A 109 98.65 -57.41 REMARK 500 2 THR A 18 -17.97 -47.48 REMARK 500 2 ASP A 19 9.64 -69.64 REMARK 500 2 ASN A 45 -108.52 -113.88 REMARK 500 2 SER A 47 97.53 68.60 REMARK 500 2 SER A 48 -56.64 -173.37 REMARK 500 2 VAL A 62 -39.72 -145.51 REMARK 500 2 PRO A 64 -14.09 -42.59 REMARK 500 2 ASP A 65 76.82 163.45 REMARK 500 2 ASP A 79 21.85 -74.85 REMARK 500 2 SER A 109 70.21 47.49 REMARK 500 3 GLN A 2 -26.53 -145.69 REMARK 500 3 TYR A 35 -74.60 -57.48 REMARK 500 3 ASN A 45 -89.22 -140.69 REMARK 500 3 ASN A 46 -166.50 -169.96 REMARK 500 3 SER A 47 13.17 53.96 REMARK 500 3 SER A 48 -41.68 78.45 REMARK 500 3 LEU A 49 153.13 -42.54 REMARK 500 3 PRO A 64 -12.91 -44.52 REMARK 500 3 ASP A 65 92.72 157.53 REMARK 500 3 ASP A 79 28.99 -75.64 REMARK 500 3 ASN A 80 27.91 46.57 REMARK 500 3 ALA A 86 137.71 -170.81 REMARK 500 3 ASN A 108 -91.46 48.61 REMARK 500 3 SER A 109 44.66 -146.50 REMARK 500 3 LEU A 111 152.86 -47.45 REMARK 500 3 ILE A 122 80.81 -172.70 REMARK 500 4 GLN A 2 -36.85 -138.85 REMARK 500 4 ASP A 3 68.37 -67.53 REMARK 500 4 PRO A 5 153.07 -48.61 REMARK 500 4 ASP A 19 2.43 -65.35 REMARK 500 4 ASN A 45 -109.31 -101.02 REMARK 500 4 ASN A 46 -42.86 -140.43 REMARK 500 4 SER A 47 -108.12 -56.93 REMARK 500 4 SER A 48 -16.44 -147.03 REMARK 500 REMARK 500 THIS ENTRY HAS 242 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30753 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED TMB2.3 DBREF 6X1K A 1 124 PDB 6X1K 6X1K 1 124 SEQRES 1 A 124 MET GLN ASP GLY PRO GLY THR LEU ASP VAL PHE VAL ALA SEQRES 2 A 124 ALA GLY TRP ASN THR ASP ASN THR ILE GLU ILE THR GLY SEQRES 3 A 124 GLY ALA THR TYR GLN LEU SER PRO TYR ILE MET VAL LYS SEQRES 4 A 124 ALA GLY TYR GLY TRP ASN ASN SER SER LEU ASN ARG PHE SEQRES 5 A 124 GLU PHE GLY GLY GLY LEU GLN TYR LYS VAL THR PRO ASP SEQRES 6 A 124 LEU GLU PRO TYR ALA TRP ALA GLY ALA THR TYR ASN THR SEQRES 7 A 124 ASP ASN THR LEU VAL PRO ALA ALA GLY ALA GLY PHE ARG SEQRES 8 A 124 TYR LYS VAL SER PRO GLU VAL LYS LEU VAL VAL GLU TYR SEQRES 9 A 124 GLY TRP ASN ASN SER SER LEU GLN PHE LEU GLN ALA GLY SEQRES 10 A 124 LEU SER TYR ARG ILE GLN PRO SHEET 1 AA1 9 THR A 7 ASN A 17 0 SHEET 2 AA1 9 THR A 21 GLN A 31 -1 O GLU A 23 N GLY A 15 SHEET 3 AA1 9 ILE A 36 TRP A 44 -1 O ALA A 40 N ALA A 28 SHEET 4 AA1 9 ARG A 51 LEU A 58 -1 O ARG A 51 N GLY A 43 SHEET 5 AA1 9 GLU A 67 ASN A 77 -1 O TYR A 76 N PHE A 52 SHEET 6 AA1 9 THR A 81 LYS A 93 -1 O GLY A 89 N TYR A 69 SHEET 7 AA1 9 LYS A 99 TRP A 106 -1 O TRP A 106 N ALA A 86 SHEET 8 AA1 9 PHE A 113 ARG A 121 -1 O GLY A 117 N VAL A 101 SHEET 9 AA1 9 THR A 7 ASN A 17 -1 N VAL A 10 O TYR A 120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1