HEADER SUGAR BINDING PROTEIN 20-MAY-20 6X2Q TITLE COMPLEX OF GYNUELLA SUNSHINYII GH46 CHITOSANASE GSCSN46A WITH TITLE 2 CHITOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITOSANASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GYNUELLA SUNSHINYII YC6258; SOURCE 3 ORGANISM_TAXID: 1445510; SOURCE 4 GENE: YC6258_05941; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.QIN,Y.WANG REVDAT 2 18-OCT-23 6X2Q 1 REMARK REVDAT 1 26-MAY-21 6X2Q 0 JRNL AUTH Z.QIN,Y.WANG JRNL TITL COMPLEX OF GYNUELLA SUNSHINYII GH46 CHITOSANASE GSCSN46A JRNL TITL 2 WITH CHITOTETRAOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 13852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.08300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4ILY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, TRIS-HCL, PH8.0,GLYCOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.87800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.17827 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.10333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 41.87800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.17827 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.10333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 41.87800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.17827 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.10333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.35655 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 78.20667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 48.35655 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 78.20667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 48.35655 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.20667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 GLN A 78 CG CD OE1 NE2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 GLN A 91 CG CD OE1 NE2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GCS B 1 C4 GCS A 304 1.66 REMARK 500 O4 GCS B 2 O5 GCS B 3 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GCS A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LWU RELATED DB: PDB DBREF1 6X2Q A 1 243 UNP A0A0C5VFC0_9GAMM DBREF2 6X2Q A A0A0C5VFC0 24 266 SEQADV 6X2Q ALA A 19 UNP A0A0C5VFC GLU 42 CONFLICT SEQRES 1 A 243 ALA GLN LEU THR ALA GLN GLN ARG LEU LEU ALA ASP GLN SEQRES 2 A 243 ILE ILE SER ILE PHE ALA ASN ASN THR PRO GLU LEU GLN SEQRES 3 A 243 TYR GLY TYR ALA GLU VAL LEU ASP ASP GLY ARG GLY ILE SEQRES 4 A 243 THR ALA GLY ARG ALA GLY PHE THR SER ALA THR GLY ASP SEQRES 5 A 243 MET LEU GLU VAL ILE GLN ARG TYR SER ARG LEU ARG PRO SEQRES 6 A 243 ASP ASN ILE LEU VAL PRO PHE LEU PRO ARG LEU GLN GLN SEQRES 7 A 243 LEU ALA ALA SER GLU ASP GLY SER ILE GLU GLY LEU GLN SEQRES 8 A 243 GLY LEU PRO GLN ARG TRP ALA ASP ALA SER GLN ASN PRO SEQRES 9 A 243 VAL PHE ARG GLN VAL GLN ASP ASP VAL VAL ASP GLU LEU SEQRES 10 A 243 TYR PHE GLN PRO ALA MET GLU ARG ALA ALA GLU LEU GLY SEQRES 11 A 243 ALA GLN MET PRO LEU THR LEU LEU ALA LEU TYR ASP ALA SEQRES 12 A 243 ILE ILE GLN HIS GLY GLU GLY ASP ASP GLY ASP GLY LEU SEQRES 13 A 243 PRO ALA MET ILE ALA ARG THR THR ALA LYS VAL ASN GLY SEQRES 14 A 243 ILE PRO ALA GLU GLY VAL ASP GLU ARG ARG TRP LEU LYS SEQRES 15 A 243 THR PHE LEU LYS ILE ARG LYS GLN VAL LEU ARG HIS PRO SEQRES 16 A 243 ALA ASN LEU GLU THR GLU ASP GLU TRP SER GLU SER THR SEQRES 17 A 243 GLY ARG VAL ASP SER LEU MET LYS LEU LEU LYS GLN GLY SEQRES 18 A 243 ASN THR ASP LEU HIS PRO PRO ILE ARG ILE SER THR TRP SEQRES 19 A 243 GLY ASP VAL PHE ILE LEU PRO ILE ARG HET GCS B 1 12 HET GCS B 2 11 HET GCS B 3 11 HET GCS A 304 11 HETNAM GCS 2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GCS BETA-D-GLUCOSAMINE; 2-AMINO-2-DEOXY-BETA-D-GLUCOSE; 2- HETSYN 2 GCS AMINO-2-DEOXY-D-GLUCOSE; 2-AMINO-2-DEOXY-GLUCOSE; D- HETSYN 3 GCS GLUCOSAMINE FORMUL 2 GCS 4(C6 H13 N O5) FORMUL 4 HOH *54(H2 O) HELIX 1 AA1 THR A 4 ASN A 21 1 18 HELIX 2 AA2 GLY A 51 ARG A 64 1 14 HELIX 3 AA3 LEU A 69 PRO A 71 5 3 HELIX 4 AA4 PHE A 72 GLU A 83 1 12 HELIX 5 AA5 GLY A 92 SER A 101 1 10 HELIX 6 AA6 ASN A 103 TYR A 118 1 16 HELIX 7 AA7 TYR A 118 GLY A 130 1 13 HELIX 8 AA8 MET A 133 GLY A 148 1 16 HELIX 9 AA9 GLY A 155 ASN A 168 1 14 HELIX 10 AB1 ILE A 170 GLY A 174 5 5 HELIX 11 AB2 ASP A 176 HIS A 194 1 19 HELIX 12 AB3 ASN A 197 GLU A 199 5 3 HELIX 13 AB4 THR A 200 GLU A 206 1 7 HELIX 14 AB5 THR A 208 GLN A 220 1 13 SHEET 1 AA1 3 ALA A 30 VAL A 32 0 SHEET 2 AA1 3 ILE A 39 ALA A 41 -1 O THR A 40 N GLU A 31 SHEET 3 AA1 3 PHE A 46 THR A 47 -1 O PHE A 46 N ALA A 41 SHEET 1 AA2 2 ILE A 229 ILE A 231 0 SHEET 2 AA2 2 PHE A 238 LEU A 240 -1 O LEU A 240 N ILE A 229 LINK O4 GCS B 1 C1 GCS B 2 1555 1555 1.43 LINK O4 GCS B 2 C1 GCS B 3 1555 1555 1.19 CISPEP 1 GLU A 88 GLY A 89 0 -7.33 CISPEP 2 PRO A 227 PRO A 228 0 -5.70 CISPEP 3 LEU A 240 PRO A 241 0 1.25 CRYST1 83.756 83.756 117.310 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011939 0.006893 0.000000 0.00000 SCALE2 0.000000 0.013786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008524 0.00000