HEADER RNA BINDING PROTEIN 22-MAY-20 6X46 TITLE NMR SOLUTION STRUCTURE OF ASTERIX/GTSF1 FROM MOUSE (CHHC ZINC FINGER TITLE 2 DOMAINS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMETOCYTE-SPECIFIC FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN FAM112B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GTSF1, CUE110, FAM112B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1711; SOURCE 11 EXPRESSION_SYSTEM_TISSUE: OVARY; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PFL KEYWDS CHHC ZINC FINGER, RNA BINDING, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.J.IPSARO,P.A.O'BRIEN,S.BHATTACHARYA,A.G.PALMER III,L.JOSHUA-TOR REVDAT 3 01-MAY-24 6X46 1 REMARK REVDAT 2 14-APR-21 6X46 1 JRNL REVDAT 1 03-MAR-21 6X46 0 JRNL AUTH J.J.IPSARO,P.A.O'BRIEN,S.BHATTACHARYA,A.G.PALMER III, JRNL AUTH 2 L.JOSHUA-TOR JRNL TITL ASTERIX/GTSF1 LINKS TRNAS AND PIRNA SILENCING OF JRNL TITL 2 RETROTRANSPOSONS. JRNL REF CELL REP V. 34 08914 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 33789107 JRNL DOI 10.1016/J.CELREP.2021.108914 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3, CNS 1.2 REMARK 3 AUTHORS : LINGE, HABECK, RIEPING, NILGES (ARIA), BRUNGER REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249457. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-15N] GTSF1, 90% REMARK 210 H2O/10% D2O; 0.8 MM [U-13C; U- REMARK 210 15N] GTSF1, 90% H2O/10% D2O; 0.8 REMARK 210 MM [U-13C; U-15N] GTSF1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HNCACB; 3D REMARK 210 HN(COCA)CB; 3D HCCH-TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D (H) REMARK 210 C(CCO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, ARIA 2.3 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 VAL A 81 REMARK 465 VAL A 82 REMARK 465 ASN A 83 REMARK 465 GLN A 84 REMARK 465 THR A 85 REMARK 465 ARG A 86 REMARK 465 ASN A 87 REMARK 465 LEU A 88 REMARK 465 GLY A 89 REMARK 465 GLN A 90 REMARK 465 GLU A 91 REMARK 465 THR A 92 REMARK 465 LEU A 93 REMARK 465 ALA A 94 REMARK 465 GLU A 95 REMARK 465 SER A 96 REMARK 465 THR A 97 REMARK 465 TRP A 98 REMARK 465 GLN A 99 REMARK 465 SER A 100 REMARK 465 PRO A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 ASP A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 TRP A 107 REMARK 465 ASP A 108 REMARK 465 LYS A 109 REMARK 465 ASP A 110 REMARK 465 LEU A 111 REMARK 465 TRP A 112 REMARK 465 GLU A 113 REMARK 465 GLN A 114 REMARK 465 THR A 115 REMARK 465 GLU A 116 REMARK 465 ASN A 117 REMARK 465 LEU A 118 REMARK 465 TYR A 119 REMARK 465 PHE A 120 REMARK 465 GLN A 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 8 91.62 67.81 REMARK 500 1 PRO A 11 37.78 -74.82 REMARK 500 1 GLU A 12 109.61 65.34 REMARK 500 1 LYS A 47 163.92 66.48 REMARK 500 1 ASN A 54 130.99 -171.06 REMARK 500 1 LYS A 74 -166.06 65.92 REMARK 500 2 GLU A 2 72.57 -158.85 REMARK 500 2 ILE A 6 -59.31 71.76 REMARK 500 2 ASP A 20 119.33 -167.09 REMARK 500 3 ASP A 3 -36.55 -143.96 REMARK 500 3 THR A 4 89.29 -155.78 REMARK 500 3 LEU A 9 103.40 65.83 REMARK 500 3 LYS A 47 43.11 -80.58 REMARK 500 3 ASN A 54 118.59 -170.41 REMARK 500 3 ILE A 77 68.42 65.46 REMARK 500 4 ASP A 20 115.35 -169.34 REMARK 500 4 ASN A 46 41.46 -90.15 REMARK 500 4 SER A 75 15.89 -147.76 REMARK 500 4 SER A 76 -66.97 -153.12 REMARK 500 5 GLU A 2 -43.81 -131.61 REMARK 500 5 GLU A 12 73.91 61.58 REMARK 500 5 ASN A 46 43.08 -105.83 REMARK 500 5 LYS A 47 44.03 -77.28 REMARK 500 6 ASN A 54 116.66 -161.28 REMARK 500 7 ASN A 40 64.90 -118.66 REMARK 500 7 HIS A 41 74.27 -117.65 REMARK 500 7 LYS A 47 79.67 -103.62 REMARK 500 7 CYS A 71 36.31 -151.16 REMARK 500 7 ASP A 73 -62.18 -103.65 REMARK 500 7 LYS A 74 -57.99 -172.69 REMARK 500 7 SER A 76 41.87 -102.28 REMARK 500 7 GLN A 79 60.21 60.11 REMARK 500 8 ILE A 6 68.15 60.23 REMARK 500 8 ASP A 10 101.43 47.04 REMARK 500 8 PRO A 11 40.52 -70.33 REMARK 500 8 LYS A 13 134.52 72.92 REMARK 500 8 LYS A 47 -28.40 73.63 REMARK 500 8 HIS A 57 79.24 -109.87 REMARK 500 8 ASP A 72 71.60 -157.78 REMARK 500 9 ILE A 6 -59.26 71.99 REMARK 500 9 ASN A 54 114.98 -169.97 REMARK 500 9 ASP A 73 -69.04 -148.00 REMARK 500 9 ILE A 77 77.14 50.72 REMARK 500 10 GLU A 2 -77.02 -86.60 REMARK 500 10 LEU A 9 143.67 66.60 REMARK 500 10 ASP A 73 -73.54 -71.13 REMARK 500 10 SER A 76 -59.40 -139.84 REMARK 500 11 GLU A 2 71.00 -100.87 REMARK 500 11 GLU A 12 81.74 63.47 REMARK 500 11 LYS A 13 -70.48 -87.40 REMARK 500 REMARK 500 THIS ENTRY HAS 97 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 HIS A 23 ND1 110.3 REMARK 620 3 HIS A 33 NE2 109.4 110.1 REMARK 620 4 CYS A 37 SG 107.9 108.7 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 HIS A 57 ND1 109.2 REMARK 620 3 HIS A 67 NE2 107.7 110.1 REMARK 620 4 CYS A 71 SG 109.2 109.6 110.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30754 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF ASTERIX/GTSF1 FROM MOUSE (CHHC ZINC REMARK 900 FINGER DOMAINS) DBREF 6X46 A 1 115 UNP Q9DAN6 GTSF1_MOUSE 1 115 SEQADV 6X46 SER A 28 UNP Q9DAN6 CYS 28 ENGINEERED MUTATION SEQADV 6X46 SER A 76 UNP Q9DAN6 CYS 76 ENGINEERED MUTATION SEQADV 6X46 SER A 100 UNP Q9DAN6 CYS 100 ENGINEERED MUTATION SEQADV 6X46 SER A 103 UNP Q9DAN6 CYS 103 ENGINEERED MUTATION SEQADV 6X46 GLU A 116 UNP Q9DAN6 EXPRESSION TAG SEQADV 6X46 ASN A 117 UNP Q9DAN6 EXPRESSION TAG SEQADV 6X46 LEU A 118 UNP Q9DAN6 EXPRESSION TAG SEQADV 6X46 TYR A 119 UNP Q9DAN6 EXPRESSION TAG SEQADV 6X46 PHE A 120 UNP Q9DAN6 EXPRESSION TAG SEQADV 6X46 GLN A 121 UNP Q9DAN6 EXPRESSION TAG SEQRES 1 A 121 MET GLU ASP THR TYR ILE ASP SER LEU ASP PRO GLU LYS SEQRES 2 A 121 LEU LEU GLN CYS PRO TYR ASP LYS ASN HIS GLN ILE ARG SEQRES 3 A 121 ALA SER ARG PHE PRO TYR HIS LEU ILE LYS CYS ARG LYS SEQRES 4 A 121 ASN HIS PRO ASP VAL ALA ASN LYS LEU ALA THR CYS PRO SEQRES 5 A 121 PHE ASN ALA ARG HIS GLN VAL PRO ARG ALA GLU ILE SER SEQRES 6 A 121 HIS HIS ILE SER SER CYS ASP ASP LYS SER SER ILE GLU SEQRES 7 A 121 GLN ASP VAL VAL ASN GLN THR ARG ASN LEU GLY GLN GLU SEQRES 8 A 121 THR LEU ALA GLU SER THR TRP GLN SER PRO PRO SER ASP SEQRES 9 A 121 GLU ASP TRP ASP LYS ASP LEU TRP GLU GLN THR GLU ASN SEQRES 10 A 121 LEU TYR PHE GLN HET ZN A 201 1 HET ZN A 202 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 ARG A 29 ASN A 40 1 12 HELIX 2 AA2 HIS A 41 ASN A 46 1 6 HELIX 3 AA3 GLU A 63 SER A 70 1 8 SHEET 1 AA1 2 LEU A 14 GLN A 16 0 SHEET 2 AA1 2 GLN A 24 ARG A 26 -1 O ILE A 25 N LEU A 15 SHEET 1 AA2 2 LEU A 48 CYS A 51 0 SHEET 2 AA2 2 ASN A 54 PRO A 60 -1 O VAL A 59 N ALA A 49 LINK SG CYS A 17 ZN ZN A 201 1555 1555 2.30 LINK ND1 HIS A 23 ZN ZN A 201 1555 1555 2.00 LINK NE2 HIS A 33 ZN ZN A 201 1555 1555 2.00 LINK SG CYS A 37 ZN ZN A 201 1555 1555 2.30 LINK SG CYS A 51 ZN ZN A 202 1555 1555 2.30 LINK ND1 HIS A 57 ZN ZN A 202 1555 1555 2.00 LINK NE2 HIS A 67 ZN ZN A 202 1555 1555 2.00 LINK SG CYS A 71 ZN ZN A 202 1555 1555 2.30 SITE 1 AC1 4 CYS A 17 HIS A 23 HIS A 33 CYS A 37 SITE 1 AC2 5 CYS A 51 HIS A 57 HIS A 67 CYS A 71 SITE 2 AC2 5 SER A 76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1