HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 27-MAY-20 6X5Y TITLE IDO1 IN COMPLEX WITH COMPOUND 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDOLEAMINE 2,3-DIOXYGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL TRUNCATED; COMPND 5 SYNONYM: IDO-1,INDOLEAMINE-PYRROLE 2,3-DIOXYGENASE; COMPND 6 EC: 1.13.11.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDO1, IDO, INDO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INDOLEAMINE DIOXYGENASE, IDO1, INHIBITOR COMPLEX, OXIDOREDUCTASE, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.LESBURG,A.LAMMENS REVDAT 3 23-OCT-24 6X5Y 1 REMARK REVDAT 2 03-APR-24 6X5Y 1 REMARK REVDAT 1 02-JUN-21 6X5Y 0 JRNL AUTH B.HOPKINS,H.ZHANG,I.BHARATHAN,D.LI,Q.PU,H.ZHOU,T.MARTINOT, JRNL AUTH 2 X.FRADERA,A.LAMMENS,C.A.LESBURG,J.BALLARD,I.KNEMEYER,K.OTTE, JRNL AUTH 3 N.SOLBAN,S.VINCENT,J.R.MILLER,M.CHENG,P.GEDA,N.SMOTROV, JRNL AUTH 4 X.SONG,P.SPACCIAPOLI,D.J.BENNETT,Y.HAN JRNL TITL UTILIZATION OF METID AND STRUCTURAL DATA TO GUIDE PLACEMENT JRNL TITL 2 OF SPIRO AND FUSED CYCLOPROPYL GROUPS FOR THE SYNTHESIS OF JRNL TITL 3 LOW DOSE IDO1 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 29141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 830 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2121 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.60000 REMARK 3 B22 (A**2) : 2.23000 REMARK 3 B33 (A**2) : 1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.648 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.327 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.308 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.399 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5963 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5664 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8106 ; 1.306 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12936 ; 1.109 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 744 ; 5.564 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;35.203 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 959 ;12.177 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ; 9.922 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 904 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6756 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1392 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 90.533 22.049 26.524 REMARK 3 T TENSOR REMARK 3 T11: 0.0996 T22: 0.2081 REMARK 3 T33: 0.1524 T12: -0.0569 REMARK 3 T13: -0.0583 T23: 0.1155 REMARK 3 L TENSOR REMARK 3 L11: 5.2608 L22: 3.0097 REMARK 3 L33: 4.0984 L12: 0.5685 REMARK 3 L13: 1.6913 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.2155 S12: 0.7660 S13: 0.1975 REMARK 3 S21: -0.0404 S22: -0.0402 S23: -0.3902 REMARK 3 S31: -0.1014 S32: 0.7206 S33: 0.2557 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 71.513 16.365 23.223 REMARK 3 T TENSOR REMARK 3 T11: 0.1224 T22: 0.0842 REMARK 3 T33: 0.0445 T12: -0.0311 REMARK 3 T13: -0.0045 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 5.1033 L22: 1.0326 REMARK 3 L33: 2.8434 L12: 1.3097 REMARK 3 L13: 2.7651 L23: 0.6126 REMARK 3 S TENSOR REMARK 3 S11: -0.0715 S12: 0.0735 S13: 0.0443 REMARK 3 S21: 0.0540 S22: -0.0321 S23: 0.0241 REMARK 3 S31: 0.0300 S32: 0.0017 S33: 0.1037 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 61.850 12.678 35.192 REMARK 3 T TENSOR REMARK 3 T11: 0.4986 T22: 0.6789 REMARK 3 T33: 0.1946 T12: -0.3718 REMARK 3 T13: 0.0002 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 6.8601 L22: 2.5002 REMARK 3 L33: 11.0695 L12: -3.8356 REMARK 3 L13: 4.4690 L23: -1.7438 REMARK 3 S TENSOR REMARK 3 S11: -0.5235 S12: -1.0509 S13: 0.2303 REMARK 3 S21: 0.6269 S22: 0.1931 S23: -0.1312 REMARK 3 S31: -0.5337 S32: -0.8620 S33: 0.3305 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): 41.702 43.152 18.253 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.5441 REMARK 3 T33: 0.2904 T12: 0.0013 REMARK 3 T13: -0.0183 T23: -0.0964 REMARK 3 L TENSOR REMARK 3 L11: 5.2015 L22: 3.3311 REMARK 3 L33: 4.3035 L12: -1.1278 REMARK 3 L13: -1.6877 L23: 1.2745 REMARK 3 S TENSOR REMARK 3 S11: -0.1424 S12: 0.3527 S13: -0.5372 REMARK 3 S21: 0.0553 S22: -0.3277 S23: 0.8202 REMARK 3 S31: 0.2388 S32: -1.2051 S33: 0.4700 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 335 REMARK 3 ORIGIN FOR THE GROUP (A): 61.051 44.390 12.949 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.1300 REMARK 3 T33: 0.0292 T12: 0.0334 REMARK 3 T13: -0.0150 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 4.2552 L22: 1.3837 REMARK 3 L33: 3.3555 L12: -0.7292 REMARK 3 L13: -1.9895 L23: 0.7607 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: 0.0827 S13: -0.1830 REMARK 3 S21: -0.0277 S22: -0.1932 S23: 0.0898 REMARK 3 S31: 0.0687 S32: -0.3578 S33: 0.2533 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 336 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 71.135 53.632 20.301 REMARK 3 T TENSOR REMARK 3 T11: 0.0598 T22: 0.2011 REMARK 3 T33: 0.0948 T12: -0.0425 REMARK 3 T13: -0.0437 T23: -0.0535 REMARK 3 L TENSOR REMARK 3 L11: 4.1153 L22: 8.4183 REMARK 3 L33: 5.3865 L12: -4.1572 REMARK 3 L13: -2.2729 L23: 3.3564 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: -0.6840 S13: 0.3015 REMARK 3 S21: 0.0649 S22: 0.2091 S23: -0.0743 REMARK 3 S31: -0.1099 S32: 0.3453 S33: -0.2378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6X5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99994 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29971 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 75.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 19.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 FOR SHELL : 2.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PREVIOUSLY SOLVED COMPLEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM TRIS PH 8.0, 20% (W/V) PEG REMARK 280 6000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.47000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.06300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.07850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.06300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.47000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.07850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 LYS A 363 REMARK 465 GLU A 364 REMARK 465 ASN A 365 REMARK 465 LYS A 366 REMARK 465 THR A 367 REMARK 465 SER A 368 REMARK 465 GLU A 369 REMARK 465 ASP A 370 REMARK 465 PRO A 371 REMARK 465 SER A 372 REMARK 465 LYS A 373 REMARK 465 LEU A 374 REMARK 465 GLU A 375 REMARK 465 ALA A 376 REMARK 465 LYS A 377 REMARK 465 GLY A 378 REMARK 465 THR A 379 REMARK 465 GLY A 380 REMARK 465 GLY A 403 REMARK 465 PRO B 362 REMARK 465 LYS B 363 REMARK 465 GLU B 364 REMARK 465 ASN B 365 REMARK 465 LYS B 366 REMARK 465 THR B 367 REMARK 465 SER B 368 REMARK 465 GLU B 369 REMARK 465 ASP B 370 REMARK 465 PRO B 371 REMARK 465 SER B 372 REMARK 465 LYS B 373 REMARK 465 LEU B 374 REMARK 465 GLU B 375 REMARK 465 ALA B 376 REMARK 465 LYS B 377 REMARK 465 GLY B 378 REMARK 465 THR B 379 REMARK 465 GLY B 380 REMARK 465 GLY B 381 REMARK 465 GLU B 402 REMARK 465 GLY B 403 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 13 CE NZ REMARK 480 GLU A 14 CD OE1 OE2 REMARK 480 GLU A 19 CG CD OE1 OE2 REMARK 480 GLU A 30 CD OE1 OE2 REMARK 480 ASP A 34 CG OD1 OD2 REMARK 480 LYS A 44 NZ REMARK 480 LYS A 61 CG CD CE NZ REMARK 480 ILE A 67 CD1 REMARK 480 LYS A 94 NZ REMARK 480 LYS A 101 NZ REMARK 480 LYS A 116 NZ REMARK 480 LYS A 117 CE NZ REMARK 480 LYS A 136 NZ REMARK 480 LYS A 141 NZ REMARK 480 GLU A 146 CD OE1 OE2 REMARK 480 LYS A 179 NZ REMARK 480 ILE A 181 CD1 REMARK 480 LYS A 186 CE NZ REMARK 480 MET A 190 CE REMARK 480 LYS A 198 NZ REMARK 480 LYS A 209 CE NZ REMARK 480 GLN A 212 CD OE1 NE2 REMARK 480 LYS A 224 CD CE NZ REMARK 480 ILE A 232 CD1 REMARK 480 LYS A 238 CE NZ REMARK 480 ASP A 255 CG OD1 OD2 REMARK 480 LYS A 257 CE NZ REMARK 480 LYS A 323 CE NZ REMARK 480 LYS A 337 CD CE NZ REMARK 480 ILE A 354 CD1 REMARK 480 LEU A 355 CD1 CD2 REMARK 480 GLN A 360 CD OE1 NE2 REMARK 480 THR A 382 OG1 CG2 REMARK 480 LEU A 384 CD1 CD2 REMARK 480 ASN A 386 CG OD1 ND2 REMARK 480 LYS A 389 NZ REMARK 480 LYS A 397 NZ REMARK 480 LYS A 401 CD CE NZ REMARK 480 GLU A 402 CG CD OE1 OE2 REMARK 480 MET B 10 SD CE REMARK 480 ILE B 11 CD1 REMARK 480 LYS B 13 CG CD CE NZ REMARK 480 GLU B 14 CG CD OE1 OE2 REMARK 480 GLU B 20 CD OE1 OE2 REMARK 480 LEU B 32 CD1 CD2 REMARK 480 ASP B 34 CG OD1 OD2 REMARK 480 PHE B 41 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 44 CD CE NZ REMARK 480 GLU B 51 CD OE1 OE2 REMARK 480 GLU B 57 CD OE1 OE2 REMARK 480 ARG B 58 CZ NH1 NH2 REMARK 480 LYS B 61 CG CD CE NZ REMARK 480 ILE B 67 CD1 REMARK 480 THR B 71 OG1 CG2 REMARK 480 LYS B 94 NZ REMARK 480 LYS B 101 CE NZ REMARK 480 ASN B 106 CG OD1 ND2 REMARK 480 ILE B 107 CD1 REMARK 480 GLN B 113 CD OE1 NE2 REMARK 480 LYS B 116 CE NZ REMARK 480 LYS B 117 CE NZ REMARK 480 LYS B 135 CE NZ REMARK 480 LYS B 141 NZ REMARK 480 ASP B 156 CG OD1 OD2 REMARK 480 LYS B 161 NZ REMARK 480 ILE B 181 CD1 REMARK 480 LYS B 186 CE NZ REMARK 480 LYS B 198 CE NZ REMARK 480 LYS B 209 CE NZ REMARK 480 LYS B 224 CD CE NZ REMARK 480 LYS B 238 NZ REMARK 480 GLU B 254 CG CD OE1 OE2 REMARK 480 ASP B 255 CG OD1 OD2 REMARK 480 LYS B 257 NZ REMARK 480 HIS B 287 CG ND1 CD2 CE1 NE2 REMARK 480 GLU B 318 CD OE1 OE2 REMARK 480 LYS B 323 NZ REMARK 480 GLU B 330 CD OE1 OE2 REMARK 480 THR B 382 OG1 CG2 REMARK 480 LYS B 397 CD CE NZ REMARK 480 LYS B 401 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 355 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 36 46.29 -105.17 REMARK 500 HIS A 45 47.70 -108.96 REMARK 500 GLN A 191 66.88 72.75 REMARK 500 VAL A 229 -70.05 -99.01 REMARK 500 PHE A 252 -56.91 -137.56 REMARK 500 ILE A 354 -53.97 -120.21 REMARK 500 GLN A 360 49.10 -98.34 REMARK 500 ASN B 27 70.48 55.34 REMARK 500 TYR B 36 49.96 -107.01 REMARK 500 VAL B 130 -60.54 -121.51 REMARK 500 ASN B 133 65.57 -104.69 REMARK 500 GLN B 191 64.93 65.78 REMARK 500 VAL B 229 -69.13 -99.87 REMARK 500 PHE B 252 -56.46 -144.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URJ A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URJ B 501 DBREF 6X5Y A 11 403 UNP P14902 I23O1_HUMAN 11 403 DBREF 6X5Y B 11 403 UNP P14902 I23O1_HUMAN 11 403 SEQADV 6X5Y MET A 10 UNP P14902 INITIATING METHIONINE SEQADV 6X5Y MET B 10 UNP P14902 INITIATING METHIONINE SEQRES 1 A 394 MET ILE SER LYS GLU TYR HIS ILE ASP GLU GLU VAL GLY SEQRES 2 A 394 PHE ALA LEU PRO ASN PRO GLN GLU ASN LEU PRO ASP PHE SEQRES 3 A 394 TYR ASN ASP TRP MET PHE ILE ALA LYS HIS LEU PRO ASP SEQRES 4 A 394 LEU ILE GLU SER GLY GLN LEU ARG GLU ARG VAL GLU LYS SEQRES 5 A 394 LEU ASN MET LEU SER ILE ASP HIS LEU THR ASP HIS LYS SEQRES 6 A 394 SER GLN ARG LEU ALA ARG LEU VAL LEU GLY CYS ILE THR SEQRES 7 A 394 MET ALA TYR VAL TRP GLY LYS GLY HIS GLY ASP VAL ARG SEQRES 8 A 394 LYS VAL LEU PRO ARG ASN ILE ALA VAL PRO TYR CYS GLN SEQRES 9 A 394 LEU SER LYS LYS LEU GLU LEU PRO PRO ILE LEU VAL TYR SEQRES 10 A 394 ALA ASP CYS VAL LEU ALA ASN TRP LYS LYS LYS ASP PRO SEQRES 11 A 394 ASN LYS PRO LEU THR TYR GLU ASN MET ASP VAL LEU PHE SEQRES 12 A 394 SER PHE ARG ASP GLY ASP CYS SER LYS GLY PHE PHE LEU SEQRES 13 A 394 VAL SER LEU LEU VAL GLU ILE ALA ALA ALA SER ALA ILE SEQRES 14 A 394 LYS VAL ILE PRO THR VAL PHE LYS ALA MET GLN MET GLN SEQRES 15 A 394 GLU ARG ASP THR LEU LEU LYS ALA LEU LEU GLU ILE ALA SEQRES 16 A 394 SER CYS LEU GLU LYS ALA LEU GLN VAL PHE HIS GLN ILE SEQRES 17 A 394 HIS ASP HIS VAL ASN PRO LYS ALA PHE PHE SER VAL LEU SEQRES 18 A 394 ARG ILE TYR LEU SER GLY TRP LYS GLY ASN PRO GLN LEU SEQRES 19 A 394 SER ASP GLY LEU VAL TYR GLU GLY PHE TRP GLU ASP PRO SEQRES 20 A 394 LYS GLU PHE ALA GLY GLY SER ALA GLY GLN SER SER VAL SEQRES 21 A 394 PHE GLN CYS PHE ASP VAL LEU LEU GLY ILE GLN GLN THR SEQRES 22 A 394 ALA GLY GLY GLY HIS ALA ALA GLN PHE LEU GLN ASP MET SEQRES 23 A 394 ARG ARG TYR MET PRO PRO ALA HIS ARG ASN PHE LEU CYS SEQRES 24 A 394 SER LEU GLU SER ASN PRO SER VAL ARG GLU PHE VAL LEU SEQRES 25 A 394 SER LYS GLY ASP ALA GLY LEU ARG GLU ALA TYR ASP ALA SEQRES 26 A 394 CYS VAL LYS ALA LEU VAL SER LEU ARG SER TYR HIS LEU SEQRES 27 A 394 GLN ILE VAL THR LYS TYR ILE LEU ILE PRO ALA SER GLN SEQRES 28 A 394 GLN PRO LYS GLU ASN LYS THR SER GLU ASP PRO SER LYS SEQRES 29 A 394 LEU GLU ALA LYS GLY THR GLY GLY THR ASP LEU MET ASN SEQRES 30 A 394 PHE LEU LYS THR VAL ARG SER THR THR GLU LYS SER LEU SEQRES 31 A 394 LEU LYS GLU GLY SEQRES 1 B 394 MET ILE SER LYS GLU TYR HIS ILE ASP GLU GLU VAL GLY SEQRES 2 B 394 PHE ALA LEU PRO ASN PRO GLN GLU ASN LEU PRO ASP PHE SEQRES 3 B 394 TYR ASN ASP TRP MET PHE ILE ALA LYS HIS LEU PRO ASP SEQRES 4 B 394 LEU ILE GLU SER GLY GLN LEU ARG GLU ARG VAL GLU LYS SEQRES 5 B 394 LEU ASN MET LEU SER ILE ASP HIS LEU THR ASP HIS LYS SEQRES 6 B 394 SER GLN ARG LEU ALA ARG LEU VAL LEU GLY CYS ILE THR SEQRES 7 B 394 MET ALA TYR VAL TRP GLY LYS GLY HIS GLY ASP VAL ARG SEQRES 8 B 394 LYS VAL LEU PRO ARG ASN ILE ALA VAL PRO TYR CYS GLN SEQRES 9 B 394 LEU SER LYS LYS LEU GLU LEU PRO PRO ILE LEU VAL TYR SEQRES 10 B 394 ALA ASP CYS VAL LEU ALA ASN TRP LYS LYS LYS ASP PRO SEQRES 11 B 394 ASN LYS PRO LEU THR TYR GLU ASN MET ASP VAL LEU PHE SEQRES 12 B 394 SER PHE ARG ASP GLY ASP CYS SER LYS GLY PHE PHE LEU SEQRES 13 B 394 VAL SER LEU LEU VAL GLU ILE ALA ALA ALA SER ALA ILE SEQRES 14 B 394 LYS VAL ILE PRO THR VAL PHE LYS ALA MET GLN MET GLN SEQRES 15 B 394 GLU ARG ASP THR LEU LEU LYS ALA LEU LEU GLU ILE ALA SEQRES 16 B 394 SER CYS LEU GLU LYS ALA LEU GLN VAL PHE HIS GLN ILE SEQRES 17 B 394 HIS ASP HIS VAL ASN PRO LYS ALA PHE PHE SER VAL LEU SEQRES 18 B 394 ARG ILE TYR LEU SER GLY TRP LYS GLY ASN PRO GLN LEU SEQRES 19 B 394 SER ASP GLY LEU VAL TYR GLU GLY PHE TRP GLU ASP PRO SEQRES 20 B 394 LYS GLU PHE ALA GLY GLY SER ALA GLY GLN SER SER VAL SEQRES 21 B 394 PHE GLN CYS PHE ASP VAL LEU LEU GLY ILE GLN GLN THR SEQRES 22 B 394 ALA GLY GLY GLY HIS ALA ALA GLN PHE LEU GLN ASP MET SEQRES 23 B 394 ARG ARG TYR MET PRO PRO ALA HIS ARG ASN PHE LEU CYS SEQRES 24 B 394 SER LEU GLU SER ASN PRO SER VAL ARG GLU PHE VAL LEU SEQRES 25 B 394 SER LYS GLY ASP ALA GLY LEU ARG GLU ALA TYR ASP ALA SEQRES 26 B 394 CYS VAL LYS ALA LEU VAL SER LEU ARG SER TYR HIS LEU SEQRES 27 B 394 GLN ILE VAL THR LYS TYR ILE LEU ILE PRO ALA SER GLN SEQRES 28 B 394 GLN PRO LYS GLU ASN LYS THR SER GLU ASP PRO SER LYS SEQRES 29 B 394 LEU GLU ALA LYS GLY THR GLY GLY THR ASP LEU MET ASN SEQRES 30 B 394 PHE LEU LYS THR VAL ARG SER THR THR GLU LYS SER LEU SEQRES 31 B 394 LEU LYS GLU GLY HET URJ A 501 30 HET URJ B 501 30 HETNAM URJ 4-FLUORO-N-{1-[5-(2-METHYLPYRIMIDIN-4-YL)-5,6,7,8- HETNAM 2 URJ TETRAHYDRO-1,5-NAPHTHYRIDIN-2-YL]CYCLOPROPYL}BENZAMIDE FORMUL 3 URJ 2(C23 H22 F N5 O) FORMUL 5 HOH *22(H2 O) HELIX 1 AA1 SER A 12 HIS A 16 5 5 HELIX 2 AA2 PRO A 33 PHE A 35 5 3 HELIX 3 AA3 TYR A 36 HIS A 45 1 10 HELIX 4 AA4 HIS A 45 SER A 52 1 8 HELIX 5 AA5 GLN A 54 LYS A 61 1 8 HELIX 6 AA6 ASP A 72 GLY A 93 1 22 HELIX 7 AA7 PRO A 104 GLU A 119 1 16 HELIX 8 AA8 VAL A 125 VAL A 130 1 6 HELIX 9 AA9 CYS A 159 VAL A 180 1 22 HELIX 10 AB1 VAL A 180 GLN A 191 1 12 HELIX 11 AB2 GLU A 192 HIS A 215 1 24 HELIX 12 AB3 GLN A 216 VAL A 221 1 6 HELIX 13 AB4 ASN A 222 VAL A 229 1 8 HELIX 14 AB5 VAL A 229 SER A 235 1 7 HELIX 15 AB6 SER A 263 SER A 267 5 5 HELIX 16 AB7 SER A 268 LEU A 277 1 10 HELIX 17 AB8 GLY A 286 MET A 295 1 10 HELIX 18 AB9 PRO A 300 ASN A 313 1 14 HELIX 19 AC1 SER A 315 LYS A 323 1 9 HELIX 20 AC2 ASP A 325 ILE A 354 1 30 HELIX 21 AC3 ILE A 354 GLN A 360 1 7 HELIX 22 AC4 THR A 382 SER A 398 1 17 HELIX 23 AC5 SER B 12 HIS B 16 5 5 HELIX 24 AC6 PRO B 33 PHE B 35 5 3 HELIX 25 AC7 TYR B 36 HIS B 45 1 10 HELIX 26 AC8 HIS B 45 SER B 52 1 8 HELIX 27 AC9 GLN B 54 LEU B 62 1 9 HELIX 28 AD1 ASP B 72 GLY B 93 1 22 HELIX 29 AD2 PRO B 104 GLU B 119 1 16 HELIX 30 AD3 VAL B 125 VAL B 130 1 6 HELIX 31 AD4 CYS B 159 LYS B 179 1 21 HELIX 32 AD5 VAL B 180 GLN B 191 1 12 HELIX 33 AD6 GLU B 192 HIS B 215 1 24 HELIX 34 AD7 GLN B 216 VAL B 221 1 6 HELIX 35 AD8 ASN B 222 VAL B 229 1 8 HELIX 36 AD9 VAL B 229 SER B 235 1 7 HELIX 37 AE1 SER B 263 GLN B 266 5 4 HELIX 38 AE2 SER B 267 LEU B 277 1 11 HELIX 39 AE3 GLY B 286 MET B 295 1 10 HELIX 40 AE4 PRO B 300 ASN B 313 1 14 HELIX 41 AE5 SER B 315 GLY B 324 1 10 HELIX 42 AE6 ASP B 325 ILE B 354 1 30 HELIX 43 AE7 ILE B 354 GLN B 361 1 8 HELIX 44 AE8 ASP B 383 SER B 398 1 16 SHEET 1 AA1 2 VAL A 102 LEU A 103 0 SHEET 2 AA1 2 VAL A 248 TYR A 249 1 O VAL A 248 N LEU A 103 SHEET 1 AA2 2 LYS A 135 LYS A 136 0 SHEET 2 AA2 2 MET A 148 ASP A 149 -1 O ASP A 149 N LYS A 135 SHEET 1 AA3 2 VAL B 102 LEU B 103 0 SHEET 2 AA3 2 VAL B 248 TYR B 249 1 O VAL B 248 N LEU B 103 SHEET 1 AA4 2 LYS B 135 LYS B 136 0 SHEET 2 AA4 2 MET B 148 ASP B 149 -1 O ASP B 149 N LYS B 135 SSBOND 1 CYS A 308 CYS B 308 1555 1555 2.02 SITE 1 AC1 15 TYR A 126 CYS A 129 PHE A 163 SER A 167 SITE 2 AC1 15 GLU A 171 ILE A 217 LEU A 234 GLY A 262 SITE 3 AC1 15 SER A 263 ALA A 264 VAL A 269 PHE A 270 SITE 4 AC1 15 LEU A 342 ARG A 343 HIS A 346 SITE 1 AC2 13 TYR B 126 CYS B 129 PHE B 163 SER B 167 SITE 2 AC2 13 GLU B 171 LEU B 234 GLY B 262 SER B 263 SITE 3 AC2 13 ALA B 264 VAL B 269 LEU B 342 ARG B 343 SITE 4 AC2 13 HIS B 346 CRYST1 84.940 92.157 130.126 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007685 0.00000