HEADER DNA BINDING PROTEIN 28-MAY-20 6X6E TITLE GLUCOCORTICOID RECEPTOR DNA BINDING DOMAIN IN COMPLEX WITH METHYLATED TITLE 2 PRECURSOR FOR A MODERN RECOGNITION ELEMENT (METHYLATED PRE-GBS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GR,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*GP*GP*AP*GP*(5CM) COMPND 8 P*GP*TP*TP*CP*TP*G)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*TP*CP*AP*GP*AP*AP*CP*GP*CP*TP*CP*(5CM) COMPND 13 P*GP*TP*TP*CP*TP*G)-3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR3C1, GRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS GR, PRE-GBS, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU,E.A.ORTLUND REVDAT 4 18-OCT-23 6X6E 1 REMARK REVDAT 3 22-SEP-21 6X6E 1 JRNL REVDAT 2 04-AUG-21 6X6E 1 JRNL REVDAT 1 02-JUN-21 6X6E 0 JRNL AUTH X.LIU,E.R.WEIKUM,D.TILO,C.VINSON,E.A.ORTLUND JRNL TITL STRUCTURAL BASIS FOR GLUCOCORTICOID RECEPTOR RECOGNITION OF JRNL TITL 2 BOTH UNMODIFIED AND METHYLATED BINDING SITES, PRECURSORS OF JRNL TITL 3 A MODERN RECOGNITION ELEMENT. JRNL REF NUCLEIC ACIDS RES. V. 49 8923 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34289059 JRNL DOI 10.1093/NAR/GKAB605 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 29196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9900 - 4.8200 1.00 2061 152 0.1499 0.1702 REMARK 3 2 4.8200 - 3.8300 1.00 2005 146 0.1485 0.1816 REMARK 3 3 3.8300 - 3.3400 0.99 1968 146 0.1775 0.2160 REMARK 3 4 3.3400 - 3.0400 0.98 1925 140 0.2059 0.2919 REMARK 3 5 3.0400 - 2.8200 1.00 1960 143 0.2185 0.2034 REMARK 3 6 2.8200 - 2.6500 1.00 1975 144 0.2015 0.2187 REMARK 3 7 2.6500 - 2.5200 1.00 1949 143 0.2194 0.2384 REMARK 3 8 2.5200 - 2.4100 1.00 1964 145 0.2113 0.2544 REMARK 3 9 2.4100 - 2.3200 1.00 1947 141 0.1999 0.2486 REMARK 3 10 2.3200 - 2.2400 1.00 1950 144 0.2193 0.2800 REMARK 3 11 2.2400 - 2.1700 1.00 1940 143 0.2299 0.2892 REMARK 3 12 2.1700 - 2.1100 1.00 1944 141 0.2445 0.2576 REMARK 3 13 2.1100 - 2.0500 0.99 1924 141 0.2809 0.2998 REMARK 3 14 2.0500 - 2.0000 0.87 1691 124 0.3189 0.3318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1945 REMARK 3 ANGLE : 0.880 2762 REMARK 3 CHIRALITY : 0.048 300 REMARK 3 PLANARITY : 0.004 231 REMARK 3 DIHEDRAL : 27.469 501 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8513 -18.3245 -1.5829 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.4110 REMARK 3 T33: 0.5061 T12: 0.0088 REMARK 3 T13: -0.0070 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 8.5997 L22: 5.6398 REMARK 3 L33: 4.1129 L12: 1.8829 REMARK 3 L13: 1.2470 L23: 0.1299 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: 0.0029 S13: -0.9281 REMARK 3 S21: -0.1425 S22: -0.1187 S23: 0.4870 REMARK 3 S31: 0.2041 S32: -0.7659 S33: 0.0650 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 451 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5719 -15.0897 0.5658 REMARK 3 T TENSOR REMARK 3 T11: 0.3146 T22: 0.2863 REMARK 3 T33: 0.3829 T12: 0.0114 REMARK 3 T13: 0.0009 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 7.6645 L22: 4.8622 REMARK 3 L33: 10.1486 L12: 1.0214 REMARK 3 L13: 3.3661 L23: -2.3588 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: -0.4296 S13: -0.0456 REMARK 3 S21: -0.0281 S22: -0.0874 S23: -0.0373 REMARK 3 S31: -0.2447 S32: -0.1408 S33: 0.1593 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 419 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4520 -17.2940 25.5877 REMARK 3 T TENSOR REMARK 3 T11: 0.7015 T22: 0.9135 REMARK 3 T33: 0.4651 T12: 0.0065 REMARK 3 T13: -0.1576 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 9.4290 L22: 5.3036 REMARK 3 L33: 4.7399 L12: 2.6686 REMARK 3 L13: -1.3886 L23: 0.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.1630 S12: -2.1898 S13: 0.0423 REMARK 3 S21: 1.1704 S22: -0.1437 S23: -0.5410 REMARK 3 S31: -0.5067 S32: 0.2260 S33: -0.0464 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 450 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5548 -30.5868 19.9801 REMARK 3 T TENSOR REMARK 3 T11: 1.4786 T22: 1.2471 REMARK 3 T33: 1.6201 T12: -0.2239 REMARK 3 T13: 0.5013 T23: 0.1705 REMARK 3 L TENSOR REMARK 3 L11: 7.9717 L22: 7.6866 REMARK 3 L33: 0.6252 L12: -3.1509 REMARK 3 L13: 0.8859 L23: -2.1958 REMARK 3 S TENSOR REMARK 3 S11: -1.5049 S12: 0.1190 S13: -0.9980 REMARK 3 S21: -1.8982 S22: 0.5140 S23: -1.5326 REMARK 3 S31: 1.5588 S32: 0.0297 S33: 0.8263 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 455 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3934 -21.4932 15.2961 REMARK 3 T TENSOR REMARK 3 T11: 0.4075 T22: 0.4087 REMARK 3 T33: 0.3919 T12: 0.0182 REMARK 3 T13: -0.0779 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 5.9655 L22: 4.8226 REMARK 3 L33: 8.3341 L12: -0.1603 REMARK 3 L13: 0.4991 L23: 2.7447 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: -0.8349 S13: -0.0766 REMARK 3 S21: 0.6738 S22: -0.0346 S23: -0.5799 REMARK 3 S31: 0.0971 S32: 0.0327 S33: 0.1288 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2150 -14.4150 0.7541 REMARK 3 T TENSOR REMARK 3 T11: 0.4635 T22: 0.5801 REMARK 3 T33: 0.9101 T12: 0.0349 REMARK 3 T13: -0.1378 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 10.1514 L22: 8.5874 REMARK 3 L33: 2.0705 L12: 3.8651 REMARK 3 L13: -1.7239 L23: 0.9350 REMARK 3 S TENSOR REMARK 3 S11: 0.7653 S12: 0.0571 S13: -1.9185 REMARK 3 S21: 0.2268 S22: -0.1876 S23: -0.9419 REMARK 3 S31: -0.0011 S32: -0.6547 S33: -0.6671 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4339 -19.2112 17.1782 REMARK 3 T TENSOR REMARK 3 T11: 0.6233 T22: 1.3888 REMARK 3 T33: 0.7832 T12: 0.0529 REMARK 3 T13: 0.0943 T23: 0.2669 REMARK 3 L TENSOR REMARK 3 L11: 1.9526 L22: 2.0398 REMARK 3 L33: 9.8366 L12: 1.8621 REMARK 3 L13: 1.8640 L23: 1.7746 REMARK 3 S TENSOR REMARK 3 S11: -0.9562 S12: -2.0491 S13: -1.1293 REMARK 3 S21: 2.1794 S22: 0.7958 S23: 0.7510 REMARK 3 S31: -1.3774 S32: -0.9970 S33: 0.0378 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2924 -14.3029 30.8785 REMARK 3 T TENSOR REMARK 3 T11: 1.0977 T22: 1.4676 REMARK 3 T33: 0.5244 T12: 0.3347 REMARK 3 T13: -0.1954 T23: -0.1368 REMARK 3 L TENSOR REMARK 3 L11: 3.1245 L22: 2.4704 REMARK 3 L33: 2.4744 L12: 2.0548 REMARK 3 L13: -0.8168 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.1710 S12: -1.7857 S13: -0.0928 REMARK 3 S21: 1.0005 S22: 0.4523 S23: 0.0879 REMARK 3 S31: -1.5538 S32: -1.0566 S33: -0.2480 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 19 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0654 -19.1581 36.6136 REMARK 3 T TENSOR REMARK 3 T11: 1.1847 T22: 1.5372 REMARK 3 T33: 0.5504 T12: -0.0353 REMARK 3 T13: -0.2325 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 4.8671 L22: 5.9922 REMARK 3 L33: 5.4535 L12: -3.5605 REMARK 3 L13: -1.4836 L23: -1.0270 REMARK 3 S TENSOR REMARK 3 S11: -1.0921 S12: -1.8546 S13: -0.0886 REMARK 3 S21: -0.6706 S22: 0.6281 S23: 0.2222 REMARK 3 S31: -1.3556 S32: 0.1362 S33: 0.3925 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 24 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1371 -16.7573 15.8322 REMARK 3 T TENSOR REMARK 3 T11: 0.4719 T22: 1.0842 REMARK 3 T33: 0.5845 T12: 0.0716 REMARK 3 T13: 0.0358 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 3.0695 L22: 4.2498 REMARK 3 L33: 7.7792 L12: -2.1021 REMARK 3 L13: 1.2377 L23: -1.2976 REMARK 3 S TENSOR REMARK 3 S11: -0.2546 S12: -2.2833 S13: -0.5857 REMARK 3 S21: 0.7286 S22: 0.4914 S23: 0.4536 REMARK 3 S31: -0.4207 S32: -0.8040 S33: -0.2608 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29271 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.991 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE PH 6.5, 80 MM REMARK 280 CALCIUM CHLORIDE, 1 % GLYCEROL, AND 7 % PEG 400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.19250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.54450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.19250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.54450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 417 REMARK 465 PRO A 418 REMARK 465 PRO B 417 REMARK 465 PRO B 418 REMARK 465 ALA B 490 REMARK 465 ARG B 491 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 462 37.67 -143.41 REMARK 500 GLU A 489 51.33 -99.56 REMARK 500 ASP B 462 40.90 -145.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 421 SG REMARK 620 2 CYS A 424 SG 110.4 REMARK 620 3 CYS A 438 SG 112.0 108.0 REMARK 620 4 CYS A 441 SG 110.5 111.4 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 457 SG REMARK 620 2 CYS A 463 SG 100.7 REMARK 620 3 CYS A 473 SG 113.4 113.9 REMARK 620 4 CYS A 476 SG 111.2 111.9 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 421 SG REMARK 620 2 CYS B 424 SG 112.7 REMARK 620 3 CYS B 438 SG 114.3 104.9 REMARK 620 4 CYS B 441 SG 105.1 115.0 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 457 SG REMARK 620 2 CYS B 463 SG 101.2 REMARK 620 3 CYS B 473 SG 112.7 114.2 REMARK 620 4 CYS B 476 SG 110.6 112.2 106.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DC D 29 and 5CM D REMARK 800 30 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 5CM D 30 and DG D REMARK 800 31 DBREF 6X6E A 417 491 UNP P04150 GCR_HUMAN 391 465 DBREF 6X6E B 417 491 UNP P04150 GCR_HUMAN 391 465 DBREF 6X6E C 1 18 PDB 6X6E 6X6E 1 18 DBREF 6X6E D 19 36 PDB 6X6E 6X6E 19 36 SEQRES 1 A 75 PRO PRO LYS LEU CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 A 75 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 A 75 VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR SEQRES 4 A 75 LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE SEQRES 5 A 75 ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS SEQRES 6 A 75 LEU GLN ALA GLY MET ASN LEU GLU ALA ARG SEQRES 1 B 75 PRO PRO LYS LEU CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 B 75 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 B 75 VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS ASN TYR SEQRES 4 B 75 LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS ILE SEQRES 5 B 75 ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS CYS SEQRES 6 B 75 LEU GLN ALA GLY MET ASN LEU GLU ALA ARG SEQRES 1 C 18 DC DC DA DG DA DA DC DG DG DA DG 5CM DG SEQRES 2 C 18 DT DT DC DT DG SEQRES 1 D 18 DT DC DA DG DA DA DC DG DC DT DC 5CM DG SEQRES 2 D 18 DT DT DC DT DG HET 5CM C 12 20 HET 5CM D 30 20 HET ZN A 501 1 HET ZN A 502 1 HET ZN B 501 1 HET ZN B 502 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 5CM 2(C10 H16 N3 O7 P) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *30(H2 O) HELIX 1 AA1 CYS A 438 GLY A 451 1 14 HELIX 2 AA2 CYS A 473 GLY A 485 1 13 HELIX 3 AA3 CYS B 438 GLU B 450 1 13 HELIX 4 AA4 ILE B 468 ASN B 472 5 5 HELIX 5 AA5 CYS B 473 ALA B 484 1 12 SHEET 1 AA1 2 GLY A 430 HIS A 432 0 SHEET 2 AA1 2 VAL A 435 THR A 437 -1 O VAL A 435 N HIS A 432 SHEET 1 AA2 2 GLY B 430 HIS B 432 0 SHEET 2 AA2 2 VAL B 435 THR B 437 -1 O VAL B 435 N HIS B 432 LINK O3' DG C 11 P 5CM C 12 1555 1555 1.61 LINK O3' 5CM C 12 P DG C 13 1555 1555 1.60 LINK O3' DC D 29 P 5CM D 30 1555 1555 1.61 LINK O3' 5CM D 30 P DG D 31 1555 1555 1.59 LINK SG CYS A 421 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 424 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 438 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 441 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 457 ZN ZN A 502 1555 1555 2.32 LINK SG CYS A 463 ZN ZN A 502 1555 1555 2.34 LINK SG CYS A 473 ZN ZN A 502 1555 1555 2.36 LINK SG CYS A 476 ZN ZN A 502 1555 1555 2.38 LINK SG CYS B 421 ZN ZN B 501 1555 1555 2.39 LINK SG CYS B 424 ZN ZN B 501 1555 1555 2.39 LINK SG CYS B 438 ZN ZN B 501 1555 1555 2.31 LINK SG CYS B 441 ZN ZN B 501 1555 1555 2.40 LINK SG CYS B 457 ZN ZN B 502 1555 1555 2.32 LINK SG CYS B 463 ZN ZN B 502 1555 1555 2.39 LINK SG CYS B 473 ZN ZN B 502 1555 1555 2.32 LINK SG CYS B 476 ZN ZN B 502 1555 1555 2.47 SITE 1 AC1 4 CYS A 421 CYS A 424 CYS A 438 CYS A 441 SITE 1 AC2 4 CYS A 457 CYS A 463 CYS A 473 CYS A 476 SITE 1 AC3 4 CYS B 421 CYS B 424 CYS B 438 CYS B 441 SITE 1 AC4 4 CYS B 457 CYS B 463 CYS B 473 CYS B 476 SITE 1 AC5 10 PHE A 444 ARG A 447 PRO A 474 DC C 7 SITE 2 AC5 10 DG C 8 DG C 9 DA C 10 DT D 28 SITE 3 AC5 10 DG D 31 HOH D 101 SITE 1 AC6 15 SER A 440 PHE A 444 ARG A 447 ARG A 470 SITE 2 AC6 15 LYS A 471 PRO A 474 ARG A 477 HOH A 606 SITE 3 AC6 15 DA C 6 DC C 7 DG C 8 DG C 9 SITE 4 AC6 15 DC D 29 DT D 32 HOH D 101 CRYST1 130.385 39.089 97.371 90.00 118.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007670 0.000000 0.004185 0.00000 SCALE2 0.000000 0.025583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011699 0.00000