HEADER PROTEIN BINDING 28-MAY-20 6X6M TITLE PEPTIDE-BOUND STRUCTURE OF MARINOMONAS PRIMORYENSIS PEPTIDE-BINDING TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIFREEZE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINOMONAS PRIMORYENSIS; SOURCE 3 ORGANISM_TAXID: 178399; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS PEPTIDE-BINDING DOMAIN, PROTEIN-BINDING DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.GUO,P.L.DAVIES REVDAT 2 03-APR-24 6X6M 1 REMARK REVDAT 1 01-SEP-21 6X6M 0 JRNL AUTH P.L.DAVIES,S.GUO JRNL TITL MOLECULAR BASIS FOR A BACTERIAL ADHESINS PEPTIDE-BINDING JRNL TITL 2 MODULE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 48377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.3900 - 4.9800 1.00 2624 141 0.2002 0.2182 REMARK 3 2 4.9800 - 3.9500 0.99 2607 138 0.1711 0.1773 REMARK 3 3 3.9500 - 3.4500 0.99 2608 144 0.1885 0.1952 REMARK 3 4 3.4500 - 3.1400 0.99 2559 147 0.1854 0.2029 REMARK 3 5 3.1400 - 2.9100 0.98 2582 144 0.2004 0.2287 REMARK 3 6 2.9100 - 2.7400 0.98 2562 132 0.1936 0.2186 REMARK 3 7 2.7400 - 2.6000 0.98 2601 140 0.1932 0.2395 REMARK 3 8 2.6000 - 2.4900 0.98 2581 127 0.1954 0.2049 REMARK 3 9 2.4900 - 2.3900 0.98 2558 142 0.1969 0.2239 REMARK 3 10 2.3900 - 2.3100 0.97 2567 126 0.1845 0.2302 REMARK 3 11 2.3100 - 2.2400 0.97 2534 149 0.1965 0.2141 REMARK 3 12 2.2400 - 2.1700 0.97 2514 130 0.1984 0.2453 REMARK 3 13 2.1700 - 2.1200 0.97 2557 139 0.2079 0.2548 REMARK 3 14 2.1200 - 2.0700 0.97 2573 139 0.2129 0.2478 REMARK 3 15 2.0700 - 2.0200 0.97 2516 143 0.2214 0.2740 REMARK 3 16 2.0200 - 1.9800 0.96 2544 135 0.2273 0.2722 REMARK 3 17 1.9800 - 1.9400 0.96 2534 113 0.2509 0.2791 REMARK 3 18 1.9400 - 1.9000 0.87 2303 124 0.2742 0.3154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.205 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.919 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3931 REMARK 3 ANGLE : 0.623 5385 REMARK 3 CHIRALITY : 0.051 632 REMARK 3 PLANARITY : 0.003 731 REMARK 3 DIHEDRAL : 15.146 1359 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 57.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.69700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 58KG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 20.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ~0.1 M CALCIUM CHLORIDE, ~0.1 M SODIUM REMARK 280 ACETATE (PH 4.6), ~30% (W/V) PEG 400, MICROBATCH, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 282 OE1 GLU A 392 1.53 REMARK 500 HG1 THR A 285 OE2 GLU A 392 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 14 170.60 65.40 REMARK 500 ASP A 133 -122.83 43.65 REMARK 500 HIS A 224 -176.35 64.49 REMARK 500 GLU A 256 -51.20 -138.11 REMARK 500 SER A 257 -77.81 -142.93 REMARK 500 THR A 334 -167.32 -126.36 REMARK 500 ASN A 372 77.32 -119.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2346 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A2351 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A2355 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A2401 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 609 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 14 OG1 REMARK 620 2 ASP A 16 OD1 77.7 REMARK 620 3 THR A 18 O 74.0 78.0 REMARK 620 4 GLU A 23 OE1 106.9 149.8 74.9 REMARK 620 5 GLU A 23 OE2 94.5 156.2 121.9 54.0 REMARK 620 6 HOH A2052 O 158.8 82.1 95.7 87.7 106.7 REMARK 620 7 HOH A2076 O 96.9 81.8 159.2 126.0 76.8 86.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD1 REMARK 620 2 ASP A 17 OD2 52.1 REMARK 620 3 THR A 101 O 97.1 95.8 REMARK 620 4 HOH A2102 O 91.3 142.0 98.9 REMARK 620 5 HOH A2151 O 124.3 75.3 68.6 142.7 REMARK 620 6 HOH A2154 O 162.9 144.9 81.4 72.3 71.2 REMARK 620 7 HOH A2208 O 88.5 83.9 172.7 85.7 104.3 94.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 610 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD2 REMARK 620 2 HOH A2007 O 81.7 REMARK 620 3 HOH A2151 O 67.5 134.3 REMARK 620 4 HOH A2300 O 56.2 91.6 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 615 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 O REMARK 620 2 SER A 40 OG 93.7 REMARK 620 3 SER A 87 O 90.0 168.0 REMARK 620 4 HOH A2123 O 81.0 83.8 85.5 REMARK 620 5 HOH A2150 O 88.3 85.8 105.8 164.5 REMARK 620 6 HOH A2432 O 175.9 83.3 92.5 95.9 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 77 OD1 REMARK 620 2 ASP A 77 OD2 53.0 REMARK 620 3 GLU A 79 O 79.8 96.2 REMARK 620 4 HOH A2165 O 153.7 150.1 83.5 REMARK 620 5 HOH A2271 O 70.1 120.4 89.2 89.5 REMARK 620 6 HOH A2272 O 94.2 82.1 173.5 101.1 86.3 REMARK 620 7 HOH A2273 O 127.1 74.8 100.0 75.8 161.5 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 116 OE1 REMARK 620 2 GLU A 116 OE2 53.0 REMARK 620 3 ARG A 161 O 81.0 125.8 REMARK 620 4 ASP A 191 OD1 112.9 77.3 155.4 REMARK 620 5 ASP A 426 OD1 96.5 81.0 77.2 119.0 REMARK 620 6 ASP A 426 OD2 121.2 72.3 123.3 68.2 50.9 REMARK 620 7 ASP A 492 OD2 161.8 145.1 82.2 80.5 86.7 74.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 162 O REMARK 620 2 ASP A 165 OD1 79.3 REMARK 620 3 VAL A 167 O 165.9 89.1 REMARK 620 4 ASP A 169 OD1 102.4 161.2 91.2 REMARK 620 5 ASP A 169 OD2 92.7 149.5 93.4 49.2 REMARK 620 6 HOH A2048 O 87.8 74.6 81.4 124.0 75.7 REMARK 620 7 HOH A2072 O 87.5 77.5 97.8 83.9 132.0 152.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD1 REMARK 620 2 ASP A 191 OD2 52.5 REMARK 620 3 SER A 192 O 81.2 87.5 REMARK 620 4 ASP A 426 OD2 73.2 124.4 95.8 REMARK 620 5 ASP A 490 OD2 150.5 151.6 83.7 83.4 REMARK 620 6 ASP A 492 OD1 93.7 89.9 174.8 82.1 100.7 REMARK 620 7 SER A 494 OG 115.7 64.6 84.8 171.0 87.7 98.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 197 O REMARK 620 2 ASP A 199 OD1 94.5 REMARK 620 3 ASP A 199 OD2 88.0 52.3 REMARK 620 4 ILE A 412 O 178.1 87.3 92.6 REMARK 620 5 ASP A 421 OD1 87.6 150.9 156.8 91.1 REMARK 620 6 TYR A 486 OH 91.5 133.6 82.1 86.8 75.2 REMARK 620 7 HOH A2004 O 100.1 73.9 126.1 80.9 77.1 149.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 616 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD1 REMARK 620 2 SER A 202 O 70.7 REMARK 620 3 THR A 408 OG1 73.5 85.3 REMARK 620 4 HOH A2308 O 142.4 75.1 88.7 REMARK 620 5 HOH A2358 O 138.0 100.1 148.1 63.0 REMARK 620 6 HOH A2448 O 73.6 140.0 67.6 130.1 118.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 614 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 215 O REMARK 620 2 ASN A 242 OD1 169.7 REMARK 620 3 ASP A 243 OD2 88.4 87.9 REMARK 620 4 ASP A 266 OD2 93.9 95.3 85.2 REMARK 620 5 ASP A 268 OD2 94.9 89.9 172.7 88.1 REMARK 620 6 HOH A2169 O 85.6 84.9 92.3 177.5 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 612 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 OD1 REMARK 620 2 ASP A 232 OD2 50.3 REMARK 620 3 ASP A 241 O 141.5 166.8 REMARK 620 4 ASP A 241 OD1 71.3 121.6 70.5 REMARK 620 5 ASP A 243 O 72.0 84.2 104.6 78.4 REMARK 620 6 HOH A2023 O 125.9 93.6 81.7 125.8 64.6 REMARK 620 7 HOH A2168 O 118.3 74.3 92.6 148.2 132.9 75.3 REMARK 620 8 HOH A2266 O 72.2 88.0 91.4 71.8 139.0 156.2 82.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 613 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 OD1 REMARK 620 2 ASP A 241 OD1 75.4 REMARK 620 3 ASP A 241 OD2 118.4 53.6 REMARK 620 4 ASP A 243 OD1 120.9 86.6 90.8 REMARK 620 5 ALA A 245 O 78.4 151.4 153.7 97.3 REMARK 620 6 ASP A 247 OD1 76.9 104.4 84.1 161.4 80.2 REMARK 620 7 HOH A2046 O 150.3 133.9 85.1 73.0 73.6 88.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 607 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 290 OD1 REMARK 620 2 TYR A 291 O 76.6 REMARK 620 3 GLU A 330 OE2 100.2 82.1 REMARK 620 4 ASP A 342 OD2 71.3 132.9 71.0 REMARK 620 5 GLU A 385 OE1 83.8 80.1 160.3 128.0 REMARK 620 6 GLU A 385 OE2 76.5 125.2 149.4 79.4 50.2 REMARK 620 7 ASP B 519 O 158.1 85.3 89.3 130.6 81.0 105.0 REMARK 620 8 ASP B 519 OXT 142.0 137.0 101.7 87.0 85.9 68.9 52.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 608 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 331 O REMARK 620 2 THR A 331 OG1 71.9 REMARK 620 3 ASN A 333 OD1 85.8 125.0 REMARK 620 4 SER A 340 O 124.5 66.4 89.5 REMARK 620 5 ASP A 342 OD1 110.3 75.1 158.4 92.7 REMARK 620 6 GLU A 385 OE2 148.6 138.6 80.1 83.5 78.8 REMARK 620 7 ASP B 519 OXT 76.7 133.9 84.3 157.5 85.5 74.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 611 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2005 O REMARK 620 2 HOH A2058 O 73.0 REMARK 620 3 HOH A2170 O 116.7 67.6 REMARK 620 4 HOH A2172 O 78.5 143.4 148.0 REMARK 620 5 HOH A2176 O 92.6 82.7 127.5 76.0 REMARK 620 6 HOH A2222 O 163.2 120.0 79.6 85.2 79.5 REMARK 620 7 HOH A2430 O 79.5 118.6 78.4 77.1 153.0 100.9 REMARK 620 N 1 2 3 4 5 6 DBREF 6X6M A 2 507 UNP A1YIY3 A1YIY3_9GAMM 206 711 DBREF 6X6M B 516 519 PDB 6X6M 6X6M 516 519 SEQRES 1 A 506 GLU ALA THR ALA GLY THR VAL THR VAL ASN ALA ILE THR SEQRES 2 A 506 SER ASP ASP THR ILE ASP GLY ILE GLU LEU GLY GLN THR SEQRES 3 A 506 ILE SER ILE SER GLY LYS ALA VAL GLY GLY ASP ILE SER SEQRES 4 A 506 VAL GLY ASP VAL VAL LYS MET THR ILE ASN ASN THR GLU SEQRES 5 A 506 TYR SER THR THR VAL LYS ALA GLY GLY ILE TRP MET ILE SEQRES 6 A 506 ALA GLY VAL LEU GLY SER ASP LEU ALA ALA ASP SER GLU SEQRES 7 A 506 PHE ASP VAL VAL VAL THR SER SER ASP ALA ALA GLY ASN SEQRES 8 A 506 LYS VAL GLN SER ILE GLY THR SER THR HIS SER VAL ASP SEQRES 9 A 506 LEU SER ALA GLU ALA ASN PHE SER LEU ALA GLU GLY GLN SEQRES 10 A 506 GLN HIS VAL LEU THR ASN LEU PRO GLU GLY PHE GLY PHE SEQRES 11 A 506 PRO ASP GLY THR THR GLU VAL VAL THR ASN PHE GLY GLY SEQRES 12 A 506 THR ILE THR LEU GLY ASP ASP GLY GLU TYR ARG TYR ASP SEQRES 13 A 506 ALA PRO VAL ARG ASP HIS GLY ASP ALA VAL SER ASP LYS SEQRES 14 A 506 ASP SER VAL THR VAL THR LEU GLU ASP GLY ARG THR PHE SEQRES 15 A 506 THR VAL ASN LEU ASP ILE GLN ASP SER ALA PRO VAL ALA SEQRES 16 A 506 VAL ASP ASP GLN ASP SER ILE VAL VAL GLN HIS GLU GLU SEQRES 17 A 506 PHE GLU VAL SER GLU ILE ALA ALA SER TRP VAL SER TYR SEQRES 18 A 506 THR HIS GLY GLU SER VAL THR THR PHE ASP GLY THR SER SEQRES 19 A 506 ASP LEU GLY GLY VAL ASP ASN ASP SER ALA LYS ASP GLN SEQRES 20 A 506 ILE ARG TRP GLY ASN PRO ALA GLU SER LYS GLN SER GLY SEQRES 21 A 506 TYR GLY PHE ILE ASP ASN ASP SER ASN LEU GLU GLY ARG SEQRES 22 A 506 PHE ASP LEU ASN GLN ASP ILE SER VAL GLY THR PHE THR SEQRES 23 A 506 HIS TYR ASN TYR PRO VAL TYR SER GLY GLY ALA ILE THR SEQRES 24 A 506 SER ALA GLU MET SER VAL GLU PHE SER VAL LEU ASP HIS SEQRES 25 A 506 LEU GLY VAL SER THR PRO VAL THR LEU THR VAL ASN PHE SEQRES 26 A 506 ASP HIS ASN GLU THR PRO ASN THR ASN ASP VAL ASN ALA SEQRES 27 A 506 SER ARG ASP ILE VAL THR VAL GLN ASN THR HIS VAL THR SEQRES 28 A 506 PHE GLU ARG ASP GLY ASP ILE TYR THR VAL GLN ILE VAL SEQRES 29 A 506 GLY PHE ARG GLU VAL GLY ASN PRO ASP GLY GLU VAL VAL SEQRES 30 A 506 THR SER ILE TYR THR ASN GLU ASN ALA ALA THR SER TYR SEQRES 31 A 506 GLU LEU VAL VAL ARG VAL VAL GLU GLY ASP GLY TYR SER SEQRES 32 A 506 LEU PRO SER THR GLU GLY ASN ILE PHE ASP ASP ASN GLY SEQRES 33 A 506 LEU GLY ALA ASP SER LEU GLY ALA ASP GLY SER VAL THR SEQRES 34 A 506 VAL VAL GLY VAL ALA VAL GLY ALA ILE VAL SER SER ASN SEQRES 35 A 506 GLU SER VAL GLY HIS SER ILE GLU GLY GLN TYR GLY ASN SEQRES 36 A 506 LEU VAL LEU ASN SER ASP GLY SER TYR VAL TYR ASP VAL SEQRES 37 A 506 THR ALA SER VAL SER ASP ILE PRO ALA GLY ALA THR GLU SEQRES 38 A 506 SER PHE ALA TYR LEU ILE GLN ASP GLN ASP GLY SER THR SEQRES 39 A 506 SER SER ALA ASN LEU SER ILE ASN VAL GLY THR ASN SEQRES 1 B 4 ASP SER THR ASP HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET CA A 604 1 HET CA A 605 1 HET CA A 606 1 HET CA A 607 1 HET CA A 608 1 HET CA A 609 1 HET CA A 610 1 HET CA A 611 1 HET CA A 612 1 HET CA A 613 1 HET CA A 614 1 HET CA A 615 1 HET CA A 616 1 HET 1PE A 801 38 HETNAM CA CALCIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 CA 16(CA 2+) FORMUL 19 1PE C10 H22 O6 FORMUL 20 HOH *447(H2 O) HELIX 1 AA1 ILE A 22 GLY A 25 5 4 HELIX 2 AA2 LYS A 59 GLY A 61 5 3 HELIX 3 AA3 GLY A 71 ASP A 77 1 7 HELIX 4 AA4 ASN A 267 GLU A 272 1 6 HELIX 5 AA5 ASP A 336 ARG A 341 1 6 HELIX 6 AA6 SER A 472 ILE A 476 5 5 SHEET 1 AA1 3 THR A 7 VAL A 10 0 SHEET 2 AA1 3 THR A 27 VAL A 35 -1 O VAL A 35 N THR A 7 SHEET 3 AA1 3 ILE A 63 LEU A 70 -1 O VAL A 69 N ILE A 28 SHEET 1 AA2 2 THR A 18 ASP A 20 0 SHEET 2 AA2 2 SER A 103 ASP A 105 1 O SER A 103 N ILE A 19 SHEET 1 AA3 4 THR A 52 THR A 57 0 SHEET 2 AA3 4 VAL A 44 ILE A 49 -1 N MET A 47 O TYR A 54 SHEET 3 AA3 4 GLU A 79 SER A 87 -1 O VAL A 83 N LYS A 46 SHEET 4 AA3 4 LYS A 93 THR A 101 -1 O GLY A 98 N VAL A 82 SHEET 1 AA4 3 SER A 107 ALA A 115 0 SHEET 2 AA4 3 THR A 182 GLN A 190 1 O GLN A 190 N LEU A 114 SHEET 3 AA4 3 LYS A 170 THR A 176 -1 N VAL A 175 O PHE A 183 SHEET 1 AA5 4 GLN A 119 VAL A 121 0 SHEET 2 AA5 4 TYR A 154 ASP A 157 -1 O TYR A 156 N HIS A 120 SHEET 3 AA5 4 THR A 145 LEU A 148 -1 N THR A 147 O ARG A 155 SHEET 4 AA5 4 GLU A 137 VAL A 139 -1 N VAL A 138 O ILE A 146 SHEET 1 AA6 4 ASP A 199 GLN A 206 0 SHEET 2 AA6 4 THR A 495 ASN A 507 1 O GLY A 505 N VAL A 205 SHEET 3 AA6 4 THR A 481 GLN A 489 -1 N PHE A 484 O LEU A 500 SHEET 4 AA6 4 THR A 430 VAL A 436 -1 N VAL A 432 O LEU A 487 SHEET 1 AA7 4 ALA A 216 HIS A 224 0 SHEET 2 AA7 4 ILE A 299 LEU A 311 -1 O SER A 305 N SER A 218 SHEET 3 AA7 4 GLU A 209 VAL A 212 -1 N GLU A 211 O LEU A 311 SHEET 4 AA7 4 ARG A 274 ASP A 276 -1 O PHE A 275 N PHE A 210 SHEET 1 AA8 5 ALA A 216 HIS A 224 0 SHEET 2 AA8 5 ILE A 299 LEU A 311 -1 O SER A 305 N SER A 218 SHEET 3 AA8 5 SER A 317 ASN A 329 -1 O THR A 318 N VAL A 310 SHEET 4 AA8 5 ASP A 342 VAL A 346 -1 O THR A 345 N ASP A 327 SHEET 5 AA8 5 SER A 380 THR A 383 -1 O THR A 383 N ASP A 342 SHEET 1 AA9 7 THR A 229 PHE A 231 0 SHEET 2 AA9 7 GLN A 248 TRP A 251 -1 O ARG A 250 N THR A 229 SHEET 3 AA9 7 SER A 260 ASP A 266 -1 O SER A 260 N TRP A 251 SHEET 4 AA9 7 ILE A 281 ASN A 290 -1 O THR A 287 N GLY A 263 SHEET 5 AA9 7 ALA A 387 GLU A 399 -1 O TYR A 391 N PHE A 286 SHEET 6 AA9 7 ASP A 358 GLU A 369 -1 N ARG A 368 O GLU A 392 SHEET 7 AA9 7 HIS A 350 ARG A 355 -1 N ARG A 355 O ASP A 358 SHEET 1 AB1 7 THR A 229 PHE A 231 0 SHEET 2 AB1 7 GLN A 248 TRP A 251 -1 O ARG A 250 N THR A 229 SHEET 3 AB1 7 SER A 260 ASP A 266 -1 O SER A 260 N TRP A 251 SHEET 4 AB1 7 ILE A 281 ASN A 290 -1 O THR A 287 N GLY A 263 SHEET 5 AB1 7 ALA A 387 GLU A 399 -1 O TYR A 391 N PHE A 286 SHEET 6 AB1 7 ASP A 358 GLU A 369 -1 N ARG A 368 O GLU A 392 SHEET 7 AB1 7 VAL A 377 VAL A 378 -1 O VAL A 378 N PHE A 367 SHEET 1 AB2 2 VAL A 293 TYR A 294 0 SHEET 2 AB2 2 THR B 518 ASP B 519 -1 O ASP B 519 N VAL A 293 SHEET 1 AB3 4 SER A 407 ASN A 411 0 SHEET 2 AB3 4 SER A 464 VAL A 469 -1 O TYR A 467 N THR A 408 SHEET 3 AB3 4 GLY A 455 LEU A 459 -1 N ASN A 456 O ASP A 468 SHEET 4 AB3 4 SER A 449 GLU A 451 -1 N ILE A 450 O LEU A 457 LINK OG1 THR A 14 CA CA A 609 1555 1555 2.59 LINK OD1 ASP A 16 CA CA A 609 1555 1555 2.44 LINK OD1 ASP A 17 CA CA A 602 1555 1555 2.54 LINK OD2 ASP A 17 CA CA A 602 1555 1555 2.48 LINK OD2 ASP A 17 CA CA A 610 1555 1555 2.70 LINK O THR A 18 CA CA A 609 1555 1555 2.32 LINK OE1 GLU A 23 CA CA A 609 1555 1555 2.48 LINK OE2 GLU A 23 CA CA A 609 1555 1555 2.33 LINK O ASP A 38 CA CA A 615 1555 1555 2.39 LINK OG SER A 40 CA CA A 615 1555 1555 2.39 LINK OD1 ASP A 77 CA CA A 601 1555 1555 2.31 LINK OD2 ASP A 77 CA CA A 601 1555 1555 2.58 LINK O GLU A 79 CA CA A 601 1555 1555 2.22 LINK O SER A 87 CA CA A 615 1555 1555 2.41 LINK O THR A 101 CA CA A 602 1555 1555 2.30 LINK OE1 GLU A 116 CA CA A 603 1555 1555 2.60 LINK OE2 GLU A 116 CA CA A 603 1555 1555 2.36 LINK O ARG A 161 CA CA A 603 1555 1555 2.36 LINK O ASP A 162 CA CA A 605 1555 1555 2.39 LINK OD1 ASP A 165 CA CA A 605 1555 1555 2.33 LINK O VAL A 167 CA CA A 605 1555 1555 2.36 LINK OD1 ASP A 169 CA CA A 605 1555 1555 2.50 LINK OD2 ASP A 169 CA CA A 605 1555 1555 2.74 LINK OD1 ASP A 191 CA CA A 603 1555 1555 2.43 LINK OD1 ASP A 191 CA CA A 604 1555 1555 2.40 LINK OD2 ASP A 191 CA CA A 604 1555 1555 2.57 LINK O SER A 192 CA CA A 604 1555 1555 2.32 LINK O VAL A 197 CA CA A 606 1555 1555 2.33 LINK OD1 ASP A 199 CA CA A 606 1555 1555 2.46 LINK OD2 ASP A 199 CA CA A 606 1555 1555 2.54 LINK OD1 ASP A 201 CA CA A 616 1555 1555 2.82 LINK O SER A 202 CA CA A 616 1555 1555 2.98 LINK O ILE A 215 CA CA A 614 1555 1555 2.25 LINK OD1 ASP A 232 CA CA A 612 1555 1555 2.68 LINK OD2 ASP A 232 CA CA A 612 1555 1555 2.45 LINK OD1 ASP A 232 CA CA A 613 1555 1555 2.32 LINK O ASP A 241 CA CA A 612 1555 1555 2.49 LINK OD1 ASP A 241 CA CA A 612 1555 1555 2.38 LINK OD1 ASP A 241 CA CA A 613 1555 1555 2.52 LINK OD2 ASP A 241 CA CA A 613 1555 1555 2.35 LINK OD1 ASN A 242 CA CA A 614 1555 1555 2.32 LINK O ASP A 243 CA CA A 612 1555 1555 2.24 LINK OD1 ASP A 243 CA CA A 613 1555 1555 2.38 LINK OD2 ASP A 243 CA CA A 614 1555 1555 2.42 LINK O ALA A 245 CA CA A 613 1555 1555 2.51 LINK OD1 ASP A 247 CA CA A 613 1555 1555 2.39 LINK OD2 ASP A 266 CA CA A 614 1555 1555 2.46 LINK OD2 ASP A 268 CA CA A 614 1555 1555 2.32 LINK OD1 ASN A 290 CA CA A 607 1555 1555 2.33 LINK O TYR A 291 CA CA A 607 1555 1555 2.51 LINK OE2 GLU A 330 CA CA A 607 1555 1555 2.36 LINK O THR A 331 CA CA A 608 1555 1555 2.42 LINK OG1 THR A 331 CA CA A 608 1555 1555 2.83 LINK OD1 ASN A 333 CA CA A 608 1555 1555 2.47 LINK O SER A 340 CA CA A 608 1555 1555 2.39 LINK OD2 ASP A 342 CA CA A 607 1555 1555 2.45 LINK OD1 ASP A 342 CA CA A 608 1555 1555 2.34 LINK OE1 GLU A 385 CA CA A 607 1555 1555 2.56 LINK OE2 GLU A 385 CA CA A 607 1555 1555 2.58 LINK OE2 GLU A 385 CA CA A 608 1555 1555 2.34 LINK OG1 THR A 408 CA CA A 616 1555 1555 2.63 LINK O ILE A 412 CA CA A 606 1555 1555 2.33 LINK OD1 ASP A 421 CA CA A 606 1555 1555 2.42 LINK OD1 ASP A 426 CA CA A 603 1555 1555 2.52 LINK OD2 ASP A 426 CA CA A 603 1555 1555 2.58 LINK OD2 ASP A 426 CA CA A 604 1555 1555 2.31 LINK OH TYR A 486 CA CA A 606 1555 1555 2.46 LINK OD2 ASP A 490 CA CA A 604 1555 1555 2.48 LINK OD2 ASP A 492 CA CA A 603 1555 1555 2.44 LINK OD1 ASP A 492 CA CA A 604 1555 1555 2.26 LINK OG SER A 494 CA CA A 604 1555 1555 2.46 LINK CA CA A 601 O HOH A2165 1555 1555 2.62 LINK CA CA A 601 O HOH A2271 1555 1555 2.38 LINK CA CA A 601 O HOH A2272 1555 1555 2.40 LINK CA CA A 601 O HOH A2273 1555 1555 2.47 LINK CA CA A 602 O HOH A2102 1555 1555 2.25 LINK CA CA A 602 O HOH A2151 1555 1555 2.48 LINK CA CA A 602 O HOH A2154 1555 1555 2.50 LINK CA CA A 602 O HOH A2208 1555 1555 2.52 LINK CA CA A 605 O HOH A2048 1555 1555 2.44 LINK CA CA A 605 O HOH A2072 1555 1555 2.44 LINK CA CA A 606 O HOH A2004 1555 1555 2.44 LINK CA CA A 607 O ASP B 519 1555 1555 2.50 LINK CA CA A 607 OXT ASP B 519 1555 1555 2.35 LINK CA CA A 608 OXT ASP B 519 1555 1555 2.30 LINK CA CA A 609 O HOH A2052 1555 1555 2.36 LINK CA CA A 609 O HOH A2076 1555 1555 2.42 LINK CA CA A 610 O HOH A2007 1555 1555 2.66 LINK CA CA A 610 O HOH A2151 1555 1555 2.75 LINK CA CA A 610 O HOH A2300 1555 1555 3.09 LINK CA CA A 611 O HOH A2005 1555 1555 2.34 LINK CA CA A 611 O HOH A2058 1555 1555 2.43 LINK CA CA A 611 O HOH A2170 1555 1555 2.39 LINK CA CA A 611 O HOH A2172 1555 1556 2.26 LINK CA CA A 611 O HOH A2176 1555 1555 2.39 LINK CA CA A 611 O HOH A2222 1555 1555 2.47 LINK CA CA A 611 O HOH A2430 1555 1555 2.39 LINK CA CA A 612 O HOH A2023 1555 1555 2.70 LINK CA CA A 612 O HOH A2168 1555 1555 2.62 LINK CA CA A 612 O HOH A2266 1555 1555 2.35 LINK CA CA A 613 O HOH A2046 1555 1555 2.57 LINK CA CA A 614 O HOH A2169 1555 1555 2.35 LINK CA CA A 615 O HOH A2123 1555 1555 2.55 LINK CA CA A 615 O HOH A2150 1555 1555 2.77 LINK CA CA A 615 O HOH A2432 1555 1555 2.76 LINK CA CA A 616 O HOH A2308 1555 1555 2.60 LINK CA CA A 616 O HOH A2358 1555 1555 2.44 LINK CA CA A 616 O HOH A2448 1555 1555 2.45 CRYST1 50.240 60.868 63.609 66.40 72.74 68.35 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019904 -0.007899 -0.003805 0.00000 SCALE2 0.000000 0.017675 -0.006131 0.00000 SCALE3 0.000000 0.000000 0.017424 0.00000