HEADER TRANSFERASE 30-MAY-20 6X7Q TITLE CHLORAMPHENICOL ACETYLTRANSFERASE TYPE III IN COMPLEX WITH TITLE 2 CHLORAMPHENICOL AND ACETYL-OXA(DETHIA)-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLORAMPHENICOL ACETYLTRANSFERASE 3; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CHLORAMPHENICOL ACETYLTRANSFERASE III,CAT-III; COMPND 5 EC: 2.3.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CAT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CHLORAMPHENICOL ACETYLTRANSFERASE, ANTIBIOTIC RESISTANCE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.B.BENJAMIN,L.M.STUNKARD,J.LING,J.N.NICE,J.R.LOHMAN REVDAT 4 25-OCT-23 6X7Q 1 REMARK REVDAT 3 08-MAR-23 6X7Q 1 JRNL REVDAT 2 20-JUL-22 6X7Q 1 COMPND REMARK DBREF SEQADV REVDAT 2 2 1 SEQRES LINK SITE ATOM REVDAT 1 02-JUN-21 6X7Q 0 JRNL AUTH A.B.BENJAMIN,L.M.STUNKARD,J.LING,J.N.NICE,J.R.LOHMAN JRNL TITL STRUCTURES OF CHLORAMPHENICOL ACETYLTRANSFERASE III AND JRNL TITL 2 ESCHERICHIA COLI BETA-KETO-ACYLSYNTHASE III CO-CRYSTALLIZED JRNL TITL 3 WITH PARTIALLY HYDROLYSED ACETYL-OXA(DE-THIA)COA JRNL REF ACTA CRYSTALLOGR.,SECT.F 61 2023 JRNL REFN ESSN 2053-230X JRNL DOI 10.1107/S2053230X23001206 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 80050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 278 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 232 REMARK 3 SOLVENT ATOMS : 806 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.217 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5900 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5161 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8074 ; 1.677 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12075 ; 0.577 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 6.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 8.929 ; 9.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 961 ;14.359 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 867 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6679 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1257 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6X7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 1.26100 REMARK 200 R SYM FOR SHELL (I) : 1.23100 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MAGNESIUM CHLORIDE, 100 MM REMARK 280 SODIUM CITRATE:CITRIC ACID, PH 5.5, 46% PEG400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.45900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.45900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.29800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.45900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.45900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.29800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.45900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.45900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.29800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.45900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.45900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.29800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN C 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 666 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 GLY A 1 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 SER C -1 REMARK 465 GLY C 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 421 O HOH B 655 1.90 REMARK 500 NZ LYS A 40 O HOH A 401 2.10 REMARK 500 O1P UTA A 301 O HOH A 402 2.11 REMARK 500 O HOH C 418 O HOH C 428 2.14 REMARK 500 O HOH A 416 O HOH A 549 2.15 REMARK 500 OG SER C 124 O HOH C 401 2.16 REMARK 500 O HOH C 471 O HOH C 598 2.17 REMARK 500 O HOH A 566 O HOH A 638 2.18 REMARK 500 O ASP A 177 O HOH A 403 2.18 REMARK 500 OG SER B 82 O HOH B 401 2.18 REMARK 500 OE2 GLU C 93 O HOH C 402 2.18 REMARK 500 OD1 ASP C 125 O HOH C 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 581 O HOH B 420 5545 2.17 REMARK 500 CG1 VAL C 118 O HOH A 428 5545 2.18 REMARK 500 O HOH C 507 O HOH C 507 2655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 144 76.77 -116.78 REMARK 500 LEU B 144 74.42 -115.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 23 0.10 SIDE CHAIN REMARK 500 ARG C 23 0.08 SIDE CHAIN REMARK 500 ARG C 178 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UTA C 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 18 OE1 REMARK 620 2 HIS A 22 ND1 112.3 REMARK 620 3 GLU B 18 OE2 133.6 27.5 REMARK 620 4 HIS B 22 ND1 132.2 31.5 6.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 18 OE1 REMARK 620 2 GLU C 18 OE1 0.0 REMARK 620 3 HIS C 22 ND1 112.9 112.9 REMARK 620 4 HIS C 22 ND1 112.9 112.9 0.0 REMARK 620 N 1 2 3 DBREF 6X7Q A 2 213 UNP P00484 CAT3_ECOLX 2 213 DBREF 6X7Q B 2 213 UNP P00484 CAT3_ECOLX 2 213 DBREF 6X7Q C 2 213 UNP P00484 CAT3_ECOLX 2 213 SEQADV 6X7Q SER A -1 UNP P00484 EXPRESSION TAG SEQADV 6X7Q GLY A 0 UNP P00484 EXPRESSION TAG SEQADV 6X7Q GLY A 1 UNP P00484 EXPRESSION TAG SEQADV 6X7Q SER B -1 UNP P00484 EXPRESSION TAG SEQADV 6X7Q GLY B 0 UNP P00484 EXPRESSION TAG SEQADV 6X7Q GLY B 1 UNP P00484 EXPRESSION TAG SEQADV 6X7Q SER C -1 UNP P00484 EXPRESSION TAG SEQADV 6X7Q GLY C 0 UNP P00484 EXPRESSION TAG SEQADV 6X7Q GLY C 1 UNP P00484 EXPRESSION TAG SEQRES 1 A 215 SER GLY GLY ASN TYR THR LYS PHE ASP VAL LYS ASN TRP SEQRES 2 A 215 VAL ARG ARG GLU HIS PHE GLU PHE TYR ARG HIS ARG LEU SEQRES 3 A 215 PRO CYS GLY PHE SER LEU THR SER LYS ILE ASP ILE THR SEQRES 4 A 215 THR LEU LYS LYS SER LEU ASP ASP SER ALA TYR LYS PHE SEQRES 5 A 215 TYR PRO VAL MET ILE TYR LEU ILE ALA GLN ALA VAL ASN SEQRES 6 A 215 GLN PHE ASP GLU LEU ARG MET ALA ILE LYS ASP ASP GLU SEQRES 7 A 215 LEU ILE VAL TRP ASP SER VAL ASP PRO GLN PHE THR VAL SEQRES 8 A 215 PHE HIS GLN GLU THR GLU THR PHE SER ALA LEU SER CYS SEQRES 9 A 215 PRO TYR SER SER ASP ILE ASP GLN PHE MET VAL ASN TYR SEQRES 10 A 215 LEU SER VAL MET GLU ARG TYR LYS SER ASP THR LYS LEU SEQRES 11 A 215 PHE PRO GLN GLY VAL THR PRO GLU ASN HIS LEU ASN ILE SEQRES 12 A 215 SER ALA LEU PRO TRP VAL ASN PHE ASP SER PHE ASN LEU SEQRES 13 A 215 ASN VAL ALA ASN PHE THR ASP TYR PHE ALA PRO ILE ILE SEQRES 14 A 215 THR MET ALA LYS TYR GLN GLN GLU GLY ASP ARG LEU LEU SEQRES 15 A 215 LEU PRO LEU SER VAL GLN VAL HIS HIS ALA VAL CYS ASP SEQRES 16 A 215 GLY PHE HIS VAL ALA ARG PHE ILE ASN ARG LEU GLN GLU SEQRES 17 A 215 LEU CYS ASN SER LYS LEU LYS SEQRES 1 B 215 SER GLY GLY ASN TYR THR LYS PHE ASP VAL LYS ASN TRP SEQRES 2 B 215 VAL ARG ARG GLU HIS PHE GLU PHE TYR ARG HIS ARG LEU SEQRES 3 B 215 PRO CYS GLY PHE SER LEU THR SER LYS ILE ASP ILE THR SEQRES 4 B 215 THR LEU LYS LYS SER LEU ASP ASP SER ALA TYR LYS PHE SEQRES 5 B 215 TYR PRO VAL MET ILE TYR LEU ILE ALA GLN ALA VAL ASN SEQRES 6 B 215 GLN PHE ASP GLU LEU ARG MET ALA ILE LYS ASP ASP GLU SEQRES 7 B 215 LEU ILE VAL TRP ASP SER VAL ASP PRO GLN PHE THR VAL SEQRES 8 B 215 PHE HIS GLN GLU THR GLU THR PHE SER ALA LEU SER CYS SEQRES 9 B 215 PRO TYR SER SER ASP ILE ASP GLN PHE MET VAL ASN TYR SEQRES 10 B 215 LEU SER VAL MET GLU ARG TYR LYS SER ASP THR LYS LEU SEQRES 11 B 215 PHE PRO GLN GLY VAL THR PRO GLU ASN HIS LEU ASN ILE SEQRES 12 B 215 SER ALA LEU PRO TRP VAL ASN PHE ASP SER PHE ASN LEU SEQRES 13 B 215 ASN VAL ALA ASN PHE THR ASP TYR PHE ALA PRO ILE ILE SEQRES 14 B 215 THR MET ALA LYS TYR GLN GLN GLU GLY ASP ARG LEU LEU SEQRES 15 B 215 LEU PRO LEU SER VAL GLN VAL HIS HIS ALA VAL CYS ASP SEQRES 16 B 215 GLY PHE HIS VAL ALA ARG PHE ILE ASN ARG LEU GLN GLU SEQRES 17 B 215 LEU CYS ASN SER LYS LEU LYS SEQRES 1 C 215 SER GLY GLY ASN TYR THR LYS PHE ASP VAL LYS ASN TRP SEQRES 2 C 215 VAL ARG ARG GLU HIS PHE GLU PHE TYR ARG HIS ARG LEU SEQRES 3 C 215 PRO CYS GLY PHE SER LEU THR SER LYS ILE ASP ILE THR SEQRES 4 C 215 THR LEU LYS LYS SER LEU ASP ASP SER ALA TYR LYS PHE SEQRES 5 C 215 TYR PRO VAL MET ILE TYR LEU ILE ALA GLN ALA VAL ASN SEQRES 6 C 215 GLN PHE ASP GLU LEU ARG MET ALA ILE LYS ASP ASP GLU SEQRES 7 C 215 LEU ILE VAL TRP ASP SER VAL ASP PRO GLN PHE THR VAL SEQRES 8 C 215 PHE HIS GLN GLU THR GLU THR PHE SER ALA LEU SER CYS SEQRES 9 C 215 PRO TYR SER SER ASP ILE ASP GLN PHE MET VAL ASN TYR SEQRES 10 C 215 LEU SER VAL MET GLU ARG TYR LYS SER ASP THR LYS LEU SEQRES 11 C 215 PHE PRO GLN GLY VAL THR PRO GLU ASN HIS LEU ASN ILE SEQRES 12 C 215 SER ALA LEU PRO TRP VAL ASN PHE ASP SER PHE ASN LEU SEQRES 13 C 215 ASN VAL ALA ASN PHE THR ASP TYR PHE ALA PRO ILE ILE SEQRES 14 C 215 THR MET ALA LYS TYR GLN GLN GLU GLY ASP ARG LEU LEU SEQRES 15 C 215 LEU PRO LEU SER VAL GLN VAL HIS HIS ALA VAL CYS ASP SEQRES 16 C 215 GLY PHE HIS VAL ALA ARG PHE ILE ASN ARG LEU GLN GLU SEQRES 17 C 215 LEU CYS ASN SER LYS LEU LYS HET UTA A 301 51 HET ZN A 302 1 HET PG4 A 303 13 HET CLM A 304 20 HET CLM B 301 20 HET UTA B 302 51 HET PEG B 303 7 HET CLM C 301 20 HET UTA C 302 52 HET ZN C 303 1 HETNAM UTA ACETYL-OXA(DETHIA)-COA HETNAM ZN ZINC ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CLM CHLORAMPHENICOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN UTA (3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)- HETSYN 2 UTA 4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3,5,9- HETSYN 3 UTA TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14-DIOXO-2,4,6- HETSYN 4 UTA TRIOXA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~- HETSYN 5 UTA DIPHOSPHAHEPTADECAN-17-YL ACETATE FORMUL 4 UTA 3(C23 H38 N7 O18 P3) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 PG4 C8 H18 O5 FORMUL 7 CLM 3(C11 H12 CL2 N2 O5) FORMUL 10 PEG C4 H10 O3 FORMUL 14 HOH *806(H2 O) HELIX 1 AA1 ASP A 7 TRP A 11 5 5 HELIX 2 AA2 ARG A 13 ARG A 23 1 11 HELIX 3 AA3 ILE A 36 ASP A 45 1 10 HELIX 4 AA4 LYS A 49 ASN A 63 1 15 HELIX 5 AA5 GLN A 64 LEU A 68 5 5 HELIX 6 AA6 ASP A 107 LYS A 123 1 17 HELIX 7 AA7 ASP A 193 ASN A 209 1 17 HELIX 8 AA8 ARG B 13 ARG B 23 1 11 HELIX 9 AA9 ILE B 36 ASP B 44 1 9 HELIX 10 AB1 LYS B 49 GLN B 64 1 16 HELIX 11 AB2 PHE B 65 LEU B 68 5 4 HELIX 12 AB3 ASP B 107 LYS B 123 1 17 HELIX 13 AB4 ASP B 193 ASN B 209 1 17 HELIX 14 AB5 ARG C 13 ARG C 23 1 11 HELIX 15 AB6 ILE C 36 ASP C 44 1 9 HELIX 16 AB7 LYS C 49 ASN C 63 1 15 HELIX 17 AB8 GLN C 64 LEU C 68 5 5 HELIX 18 AB9 ASP C 107 LYS C 123 1 17 HELIX 19 AC1 ASP C 193 ASN C 209 1 17 SHEET 1 AA1 3 TYR A 3 LYS A 5 0 SHEET 2 AA1 3 GLU A 76 TRP A 80 -1 O VAL A 79 N THR A 4 SHEET 3 AA1 3 MET A 70 LYS A 73 -1 N ALA A 71 O ILE A 78 SHEET 1 AA2 6 THR A 96 SER A 101 0 SHEET 2 AA2 6 ASP A 84 HIS A 91 -1 N PHE A 87 O LEU A 100 SHEET 3 AA2 6 HIS A 138 LEU A 144 1 O LEU A 139 N GLN A 86 SHEET 4 AA2 6 ILE A 166 ALA A 170 1 O MET A 169 N SER A 142 SHEET 5 AA2 6 ARG A 178 HIS A 188 -1 O SER A 184 N THR A 168 SHEET 6 AA2 6 GLN A 173 GLU A 175 -1 N GLU A 175 O ARG A 178 SHEET 1 AA3 7 THR A 96 SER A 101 0 SHEET 2 AA3 7 ASP A 84 HIS A 91 -1 N PHE A 87 O LEU A 100 SHEET 3 AA3 7 HIS A 138 LEU A 144 1 O LEU A 139 N GLN A 86 SHEET 4 AA3 7 ILE A 166 ALA A 170 1 O MET A 169 N SER A 142 SHEET 5 AA3 7 ARG A 178 HIS A 188 -1 O SER A 184 N THR A 168 SHEET 6 AA3 7 CYS A 26 ASP A 35 -1 N ILE A 34 O LEU A 181 SHEET 7 AA3 7 SER C 151 VAL C 156 -1 O ASN C 155 N GLY A 27 SHEET 1 AA4 7 SER A 151 VAL A 156 0 SHEET 2 AA4 7 CYS B 26 ASP B 35 -1 O GLY B 27 N ASN A 155 SHEET 3 AA4 7 ARG B 178 HIS B 188 -1 O LEU B 181 N ILE B 34 SHEET 4 AA4 7 ILE B 166 ALA B 170 -1 N THR B 168 O SER B 184 SHEET 5 AA4 7 HIS B 138 LEU B 144 1 N ASN B 140 O ILE B 167 SHEET 6 AA4 7 ASP B 84 HIS B 91 1 N GLN B 86 O ILE B 141 SHEET 7 AA4 7 THR B 96 SER B 101 -1 O LEU B 100 N PHE B 87 SHEET 1 AA5 4 SER A 151 VAL A 156 0 SHEET 2 AA5 4 CYS B 26 ASP B 35 -1 O GLY B 27 N ASN A 155 SHEET 3 AA5 4 ARG B 178 HIS B 188 -1 O LEU B 181 N ILE B 34 SHEET 4 AA5 4 GLN B 173 GLU B 175 -1 N GLU B 175 O ARG B 178 SHEET 1 AA6 3 TYR B 3 LYS B 5 0 SHEET 2 AA6 3 GLU B 76 TRP B 80 -1 O VAL B 79 N THR B 4 SHEET 3 AA6 3 MET B 70 LYS B 73 -1 N ALA B 71 O ILE B 78 SHEET 1 AA7 7 SER B 151 VAL B 156 0 SHEET 2 AA7 7 CYS C 26 ASP C 35 -1 O GLY C 27 N ASN B 155 SHEET 3 AA7 7 ARG C 178 HIS C 188 -1 O LEU C 181 N ILE C 34 SHEET 4 AA7 7 ILE C 166 ALA C 170 -1 N THR C 168 O SER C 184 SHEET 5 AA7 7 HIS C 138 LEU C 144 1 N ASN C 140 O ILE C 167 SHEET 6 AA7 7 ASP C 84 HIS C 91 1 N GLN C 86 O LEU C 139 SHEET 7 AA7 7 THR C 96 SER C 101 -1 O THR C 96 N HIS C 91 SHEET 1 AA8 4 SER B 151 VAL B 156 0 SHEET 2 AA8 4 CYS C 26 ASP C 35 -1 O GLY C 27 N ASN B 155 SHEET 3 AA8 4 ARG C 178 HIS C 188 -1 O LEU C 181 N ILE C 34 SHEET 4 AA8 4 GLN C 173 GLU C 175 -1 N GLU C 175 O ARG C 178 SHEET 1 AA9 3 TYR C 3 LYS C 5 0 SHEET 2 AA9 3 GLU C 76 TRP C 80 -1 O VAL C 79 N THR C 4 SHEET 3 AA9 3 MET C 70 LYS C 73 -1 N ALA C 71 O ILE C 78 LINK OE1 GLU A 18 ZN ZN A 302 1555 1555 1.99 LINK ND1 HIS A 22 ZN ZN A 302 1555 1555 2.03 LINK ZN ZN A 302 OE2 GLU B 18 2655 1555 2.02 LINK ZN ZN A 302 ND1 HIS B 22 2655 1555 2.08 LINK OE1 GLU C 18 ZN ZN C 303 1555 1555 2.05 LINK OE1 GLU C 18 ZN ZN C 303 1555 2655 2.05 LINK ND1 HIS C 22 ZN ZN C 303 1555 1555 2.05 LINK ND1 HIS C 22 ZN ZN C 303 1555 2655 2.05 CRYST1 106.918 106.918 126.596 90.00 90.00 90.00 P 42 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007899 0.00000