HEADER SUGAR BINDING PROTEIN 01-JUN-20 6X8D TITLE ARABINOSE-BOUND STRUCTURE OF MARINOMONAS PRIMORYENSIS PA14 TITLE 2 CARBOHYDRATE-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIFREEZE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOHYDRATE-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINOMONAS PRIMORYENSIS; SOURCE 3 ORGANISM_TAXID: 178399; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARABINOSE-MPPA14 COMPLEX, PA14 DOMAIN, CARBOHYDRATE-BINDING PROTEIN, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.GUO,P.L.DAVIES REVDAT 2 18-OCT-23 6X8D 1 REMARK REVDAT 1 02-JUN-21 6X8D 0 JRNL AUTH S.GUO,T.D.R.VANCE,H.ZAHIRI,R.EVES,C.STEVENS,J.H.HEHEMANN, JRNL AUTH 2 S.VIDAL-MELGOSA,P.L.DAVIES JRNL TITL STRUCTURAL BASIS OF LIGAND SELECTIVITY BY A BACTERIAL JRNL TITL 2 ADHESIN LECTIN INVOLVED IN MULTISPECIES BIOFILM FORMATION. JRNL REF MBIO V. 12 2021 JRNL REFN ESSN 2150-7511 JRNL PMID 33824212 JRNL DOI 10.1128/MBIO.00130-21 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GUO REMARK 1 TITL MOLECULAR BASIS FOR A BACTERIAL ADHESINS SUGAR-BINDING REMARK 1 TITL 2 MODULE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 98239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7700 - 3.1100 1.00 3394 179 0.1732 0.2001 REMARK 3 2 3.1100 - 2.4700 1.00 3231 170 0.1651 0.1767 REMARK 3 3 2.4700 - 2.1500 1.00 3204 169 0.1523 0.1477 REMARK 3 4 2.1500 - 1.9600 1.00 3181 167 0.1450 0.1623 REMARK 3 5 1.9600 - 1.8200 1.00 3161 167 0.1445 0.1606 REMARK 3 6 1.8200 - 1.7100 1.00 3180 167 0.1422 0.1471 REMARK 3 7 1.7100 - 1.6200 1.00 3140 166 0.1348 0.1677 REMARK 3 8 1.6200 - 1.5500 1.00 3155 166 0.1306 0.1496 REMARK 3 9 1.5500 - 1.4900 1.00 3132 164 0.1245 0.1494 REMARK 3 10 1.4900 - 1.4400 1.00 3143 166 0.1261 0.1567 REMARK 3 11 1.4400 - 1.4000 1.00 3150 166 0.1334 0.1524 REMARK 3 12 1.4000 - 1.3600 1.00 3110 163 0.1290 0.1573 REMARK 3 13 1.3600 - 1.3200 1.00 3146 166 0.1271 0.1519 REMARK 3 14 1.3200 - 1.2900 1.00 3099 163 0.1262 0.1554 REMARK 3 15 1.2900 - 1.2600 1.00 3132 165 0.1268 0.1622 REMARK 3 16 1.2600 - 1.2300 1.00 3133 165 0.1236 0.1637 REMARK 3 17 1.2300 - 1.2100 1.00 3108 163 0.1265 0.1407 REMARK 3 18 1.2100 - 1.1900 1.00 3124 165 0.1171 0.1557 REMARK 3 19 1.1900 - 1.1600 1.00 3139 165 0.1224 0.1400 REMARK 3 20 1.1600 - 1.1400 1.00 3104 163 0.1226 0.1528 REMARK 3 21 1.1400 - 1.1300 1.00 3099 163 0.1217 0.1868 REMARK 3 22 1.1300 - 1.1100 1.00 3118 164 0.1287 0.1357 REMARK 3 23 1.1100 - 1.0900 1.00 3100 163 0.1407 0.1392 REMARK 3 24 1.0900 - 1.0800 1.00 3062 161 0.1415 0.1584 REMARK 3 25 1.0800 - 1.0600 1.00 3162 167 0.1400 0.1675 REMARK 3 26 1.0600 - 1.0500 1.00 3095 162 0.1427 0.1715 REMARK 3 27 1.0500 - 1.0400 1.00 3103 164 0.1507 0.1507 REMARK 3 28 1.0400 - 1.0200 0.99 3102 163 0.1761 0.2098 REMARK 3 29 1.0200 - 1.0100 0.90 2764 146 0.2382 0.2505 REMARK 3 30 1.0100 - 1.0000 0.83 2556 134 0.3100 0.3534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.763 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1494 REMARK 3 ANGLE : 1.672 2049 REMARK 3 CHIRALITY : 0.120 225 REMARK 3 PLANARITY : 0.013 275 REMARK 3 DIHEDRAL : 14.604 511 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106425 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.960 REMARK 200 RESOLUTION RANGE LOW (A) : 42.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5J6Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 0.1 M HEPES REMARK 280 (PH 7), 20% (V/V) POLYETHYLENE GLYCOL 3350 AND 30 % (W/V) REMARK 280 ARABINOSE, MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 THR A 191 REMARK 465 THR A 192 REMARK 465 ALA A 193 REMARK 465 GLN A 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 35.62 71.01 REMARK 500 ASP A 60 120.51 81.60 REMARK 500 ASP A 111 -118.72 -92.83 REMARK 500 ASP A 126 45.25 -97.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 579 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 580 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 22 OH REMARK 620 2 VAL A 38 O 94.4 REMARK 620 3 LYS A 41 O 95.3 85.1 REMARK 620 4 HOH A 476 O 90.7 171.6 101.0 REMARK 620 5 HOH A 497 O 176.8 88.4 83.2 86.8 REMARK 620 6 HOH A 508 O 92.5 94.0 172.1 79.1 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 27 OE1 REMARK 620 2 ASP A 87 OD1 122.7 REMARK 620 3 ASP A 87 OD2 77.0 53.4 REMARK 620 4 GLN A 156 O 110.5 89.1 79.8 REMARK 620 5 GLN A 156 O 110.5 89.2 79.9 0.1 REMARK 620 6 HOH A 389 O 78.9 158.4 141.3 80.9 80.8 REMARK 620 7 HOH A 486 O 79.9 88.1 106.9 168.9 168.9 98.0 REMARK 620 8 HOH A 498 O 146.9 84.6 135.5 86.0 86.0 75.7 83.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 64 O REMARK 620 2 ASP A 81 OD1 121.4 REMARK 620 3 PRO A 82 O 157.4 78.9 REMARK 620 4 HOH A 347 O 77.3 73.7 121.0 REMARK 620 5 HOH A 393 O 75.9 77.5 101.7 121.2 REMARK 620 6 HOH A 398 O 87.1 132.8 84.4 78.0 149.5 REMARK 620 7 HOH A 419 O 83.0 136.3 74.8 150.0 74.5 78.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 ASP A 111 OD2 78.3 REMARK 620 3 ASP A 155 OD1 122.6 80.1 REMARK 620 4 GLY A 157 O 159.5 112.2 77.5 REMARK 620 5 ASP A 159 O 77.8 133.6 80.2 103.8 REMARK 620 6 ARA A 207 O1 85.8 73.0 135.8 81.0 143.0 REMARK 620 7 ARA A 207 O2 79.3 134.8 144.3 81.0 77.8 66.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 119 O REMARK 620 2 SER A 130 OG 83.7 REMARK 620 3 SER A 130 OG 81.6 3.1 REMARK 620 4 HOH A 413 O 72.4 105.0 102.0 REMARK 620 5 HOH A 478 O 97.2 29.1 28.1 84.6 REMARK 620 6 HOH A 490 O 133.0 108.5 111.6 139.5 115.6 REMARK 620 7 HOH A 515 O 78.8 157.2 156.9 83.6 168.2 74.3 REMARK 620 8 HOH A 563 O 75.9 53.0 54.9 143.3 81.5 76.7 107.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 378 O REMARK 620 2 HOH A 410 O 78.6 REMARK 620 3 HOH A 439 O 75.0 135.5 REMARK 620 4 HOH A 450 O 87.3 71.4 72.1 REMARK 620 5 HOH A 482 O 137.8 128.3 63.2 75.2 REMARK 620 6 HOH A 522 O 75.2 72.3 131.9 142.1 138.5 REMARK 620 7 HOH A 548 O 150.4 79.5 134.3 104.3 71.8 79.3 REMARK 620 8 HOH A 577 O 99.9 144.2 76.1 144.3 76.2 72.8 86.5 REMARK 620 N 1 2 3 4 5 6 7 DBREF 6X8D A 5 194 UNP A1YIY3 A1YIY3_9GAMM 717 906 SEQRES 1 A 190 GLN ASP ASP SER THR PRO ASP SER LEU PHE ALA GLY LEU SEQRES 2 A 190 VAL GLY GLU TYR TYR GLY THR ASN SER GLN LEU ASN ASN SEQRES 3 A 190 ILE SER ASP PHE ARG ALA LEU VAL ASP SER LYS GLU ALA SEQRES 4 A 190 ASP ALA THR PHE GLU ALA ALA ASN ILE SER TYR GLY ARG SEQRES 5 A 190 GLY SER SER ASP VAL ALA LYS GLY THR HIS LEU GLN GLU SEQRES 6 A 190 PHE LEU GLY SER ASP ALA SER THR LEU SER THR ASP PRO SEQRES 7 A 190 GLY ASP ASN THR ASP GLY GLY ILE TYR LEU GLN GLY TYR SEQRES 8 A 190 VAL TYR LEU GLU ALA GLY THR TYR ASN PHE LYS VAL THR SEQRES 9 A 190 ALA ASP ASP GLY TYR GLU ILE THR ILE ASN GLY ASN PRO SEQRES 10 A 190 VAL ALA THR VAL ASP ASN ASN GLN SER VAL TYR THR VAL SEQRES 11 A 190 THR HIS ALA SER PHE THR ILE SER GLU SER GLY TYR GLN SEQRES 12 A 190 ALA ILE ASP MET ILE TRP TRP ASP GLN GLY GLY ASP TYR SEQRES 13 A 190 VAL PHE GLN PRO THR LEU SER ALA ASP GLY GLY SER THR SEQRES 14 A 190 TYR PHE VAL LEU ASP SER ALA ILE LEU SER SER THR GLY SEQRES 15 A 190 GLU THR PRO TYR THR THR ALA GLN HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HET ARA A 207 20 HET EDO A 208 10 HET EDO A 209 10 HET EDO A 210 10 HETNAM CA CALCIUM ION HETNAM ARA ALPHA-L-ARABINOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN ARA ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 6(CA 2+) FORMUL 8 ARA C5 H10 O5 FORMUL 9 EDO 3(C2 H6 O2) FORMUL 12 HOH *281(H2 O) HELIX 1 AA1 ASN A 30 LYS A 41 1 12 HELIX 2 AA2 THR A 65 GLY A 72 1 8 HELIX 3 AA3 SER A 73 LEU A 78 5 6 SHEET 1 AA1 6 ALA A 45 ALA A 49 0 SHEET 2 AA1 6 LEU A 17 THR A 24 -1 N TYR A 21 O ALA A 45 SHEET 3 AA1 6 ASP A 87 LEU A 98 -1 O ASP A 87 N THR A 24 SHEET 4 AA1 6 GLY A 145 ASP A 155 -1 O ASP A 155 N GLY A 88 SHEET 5 AA1 6 TYR A 113 ILE A 117 -1 N THR A 116 O ASP A 150 SHEET 6 AA1 6 ASN A 120 VAL A 125 -1 O VAL A 122 N ILE A 115 SHEET 1 AA2 4 ALA A 45 ALA A 49 0 SHEET 2 AA2 4 LEU A 17 THR A 24 -1 N TYR A 21 O ALA A 45 SHEET 3 AA2 4 ASP A 87 LEU A 98 -1 O ASP A 87 N THR A 24 SHEET 4 AA2 4 LEU A 182 SER A 183 -1 O SER A 183 N TYR A 95 SHEET 1 AA3 4 TYR A 54 GLY A 57 0 SHEET 2 AA3 4 TYR A 160 SER A 167 -1 O PHE A 162 N TYR A 54 SHEET 3 AA3 4 GLY A 101 ASP A 110 -1 N THR A 108 O GLN A 163 SHEET 4 AA3 4 PHE A 139 ILE A 141 -1 O ILE A 141 N GLY A 101 SHEET 1 AA4 4 TYR A 132 THR A 135 0 SHEET 2 AA4 4 GLY A 101 ASP A 110 -1 N VAL A 107 O VAL A 134 SHEET 3 AA4 4 TYR A 160 SER A 167 -1 O GLN A 163 N THR A 108 SHEET 4 AA4 4 PHE A 175 VAL A 176 -1 O PHE A 175 N LEU A 166 LINK OH TYR A 22 CA CA A 204 1555 1555 2.58 LINK OE1 GLN A 27 CA CA A 203 1555 1555 2.32 LINK O VAL A 38 CA CA A 204 1555 1555 2.37 LINK O LYS A 41 CA CA A 204 1555 1555 2.38 LINK O GLY A 64 CA CA A 202 1555 1555 2.44 LINK OD1 ASP A 81 CA CA A 202 1555 1555 2.46 LINK O PRO A 82 CA CA A 202 1555 1555 2.33 LINK OD1 ASP A 87 CA CA A 203 1555 1555 2.43 LINK OD2 ASP A 87 CA CA A 203 1555 1555 2.52 LINK OD1 ASP A 110 CA CA A 201 1555 1555 2.33 LINK OD2 ASP A 111 CA CA A 201 1555 1555 2.43 LINK O GLY A 119 CA CA A 205 1555 1555 2.40 LINK OG ASER A 130 CA CA A 205 1555 3646 2.99 LINK OG BSER A 130 CA CA A 205 1555 3646 2.62 LINK OD1 ASP A 155 CA CA A 201 1555 1555 2.29 LINK O AGLN A 156 CA CA A 203 1555 1555 2.32 LINK O BGLN A 156 CA CA A 203 1555 1555 2.32 LINK O GLY A 157 CA CA A 201 1555 1555 2.39 LINK O ASP A 159 CA CA A 201 1555 1555 2.38 LINK CA CA A 201 O1 ARA A 207 1555 1555 2.53 LINK CA CA A 201 O2 ARA A 207 1555 1555 2.50 LINK CA CA A 202 O HOH A 347 1555 1555 2.37 LINK CA CA A 202 O HOH A 393 1555 1555 2.42 LINK CA CA A 202 O HOH A 398 1555 1555 2.41 LINK CA CA A 202 O HOH A 419 1555 1555 2.43 LINK CA CA A 203 O HOH A 389 1555 1555 2.40 LINK CA CA A 203 O HOH A 486 1555 1555 2.34 LINK CA CA A 203 O HOH A 498 1555 1555 2.40 LINK CA CA A 204 O HOH A 476 1555 1555 2.39 LINK CA CA A 204 O HOH A 497 1555 1555 2.49 LINK CA CA A 204 O HOH A 508 1555 1555 2.30 LINK CA CA A 205 O HOH A 413 1555 1555 2.38 LINK CA CA A 205 O HOH A 478 1555 3656 2.28 LINK CA CA A 205 O HOH A 490 1555 3656 2.50 LINK CA CA A 205 O HOH A 515 1555 3656 2.42 LINK CA CA A 205 O HOH A 563 1555 3656 2.38 LINK CA CA A 206 O HOH A 378 1555 1555 2.43 LINK CA CA A 206 O HOH A 410 1555 1555 2.57 LINK CA CA A 206 O HOH A 439 1555 1555 2.55 LINK CA CA A 206 O HOH A 450 1555 1555 2.41 LINK CA CA A 206 O HOH A 482 1555 1555 2.66 LINK CA CA A 206 O HOH A 522 1555 1555 2.36 LINK CA CA A 206 O HOH A 548 1555 1555 2.46 LINK CA CA A 206 O HOH A 577 1555 1555 2.47 CISPEP 1 GLY A 55 ARG A 56 0 7.42 CISPEP 2 ASP A 110 ASP A 111 0 4.43 CRYST1 45.120 50.710 79.620 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012560 0.00000