HEADER HYDROLASE/HYDROLASE INHIBITOR 01-JUN-20 6X8H TITLE CASPASE-8 IN COMPLEX WITH AOMK INHIBITOR, AC-DW3-KE, FORMS TETRAHEDRAL TITLE 2 ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P18 (UNP RESIDUES 276-443); COMPND 5 SYNONYM: CASP-8,APOPTOTIC CYSTEINE PROTEASE,APOPTOTIC PROTEASE MCH-5, COMPND 6 CAP4,FADD-HOMOLOGOUS ICE/CED-3-LIKE PROTEASE,FADD-LIKE ICE,FLICE,ICE- COMPND 7 LIKE APOPTOTIC PROTEASE 5,MORT1-ASSOCIATED CED-3 HOMOLOG,MACH; COMPND 8 EC: 3.4.22.61; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CASPASE-8; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: P10 (UNP RESIDUES 444-538); COMPND 14 SYNONYM: CASP-8,APOPTOTIC CYSTEINE PROTEASE,APOPTOTIC PROTEASE MCH-5, COMPND 15 CAP4,FADD-HOMOLOGOUS ICE/CED-3-LIKE PROTEASE,FADD-LIKE ICE,FLICE,ICE- COMPND 16 LIKE APOPTOTIC PROTEASE 5,MORT1-ASSOCIATED CED-3 HOMOLOG,MACH; COMPND 17 EC: 3.4.22.61; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 3; COMPND 20 MOLECULE: AC-DW3-KE; COMPND 21 CHAIN: C; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP8, MCH5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CASP8, MCH5; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, TETRAHEDRAL, COMPLEX, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SOLANIA,J.H.XU,D.W.WOLAN REVDAT 4 15-NOV-23 6X8H 1 LINK ATOM REVDAT 3 18-OCT-23 6X8H 1 REMARK REVDAT 2 16-MAR-22 6X8H 1 REMARK REVDAT 1 02-JUN-21 6X8H 0 JRNL AUTH A.SOLANIA,J.H.XU,D.W.WOLAN JRNL TITL CASPASE-8 IN COMPLEX WITH AOMK INHIBITOR, AC-DW3-KE, FORMS JRNL TITL 2 TETRAHEDRAL ADDUCT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9310 - 3.8058 1.00 2980 162 0.1611 0.1696 REMARK 3 2 3.8058 - 3.0209 1.00 2856 130 0.1387 0.1568 REMARK 3 3 3.0209 - 2.6391 1.00 2824 137 0.1501 0.1692 REMARK 3 4 2.6391 - 2.3978 1.00 2777 131 0.1538 0.1531 REMARK 3 5 2.3978 - 2.2259 1.00 2779 161 0.1409 0.1567 REMARK 3 6 2.2259 - 2.0947 1.00 2797 116 0.1363 0.1857 REMARK 3 7 2.0947 - 1.9898 1.00 2735 182 0.1380 0.1566 REMARK 3 8 1.9898 - 1.9031 1.00 2749 142 0.1437 0.1589 REMARK 3 9 1.9031 - 1.8299 1.00 2749 136 0.1431 0.1822 REMARK 3 10 1.8299 - 1.7667 1.00 2757 140 0.1496 0.1807 REMARK 3 11 1.7667 - 1.7115 1.00 2765 129 0.1449 0.1510 REMARK 3 12 1.7115 - 1.6626 1.00 2733 150 0.1490 0.1578 REMARK 3 13 1.6626 - 1.6188 1.00 2711 161 0.1490 0.1725 REMARK 3 14 1.6188 - 1.5793 1.00 2749 112 0.1515 0.1862 REMARK 3 15 1.5793 - 1.5434 1.00 2721 148 0.1607 0.1914 REMARK 3 16 1.5434 - 1.5105 0.99 2717 130 0.1643 0.1588 REMARK 3 17 1.5105 - 1.4803 0.99 2692 136 0.1886 0.2227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3005 -14.2399 3.7843 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.0542 REMARK 3 T33: 0.0564 T12: 0.0007 REMARK 3 T13: -0.0309 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.5668 L22: 1.6410 REMARK 3 L33: 2.0800 L12: -0.0376 REMARK 3 L13: -0.3826 L23: -0.7585 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.0933 S13: 0.1135 REMARK 3 S21: 0.0254 S22: 0.1047 S23: 0.1434 REMARK 3 S31: -0.0024 S32: -0.2277 S33: -0.0838 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4311 -17.0546 7.9315 REMARK 3 T TENSOR REMARK 3 T11: 0.0488 T22: 0.0580 REMARK 3 T33: 0.0698 T12: 0.0304 REMARK 3 T13: 0.0048 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.1123 L22: 0.6584 REMARK 3 L33: 1.6039 L12: 0.6635 REMARK 3 L13: -0.0041 L23: 0.2300 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.0459 S13: 0.0073 REMARK 3 S21: 0.0353 S22: -0.0135 S23: 0.0446 REMARK 3 S31: 0.0801 S32: -0.1019 S33: -0.0052 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7076 -20.9131 0.5712 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0714 REMARK 3 T33: 0.0721 T12: 0.0086 REMARK 3 T13: -0.0104 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.5601 L22: 2.4143 REMARK 3 L33: 2.6321 L12: 0.7786 REMARK 3 L13: -0.4409 L23: -1.6202 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.0515 S13: 0.0118 REMARK 3 S21: -0.0781 S22: 0.0480 S23: 0.0862 REMARK 3 S31: 0.1071 S32: -0.1281 S33: -0.0393 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5119 -21.5165 4.6031 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: 0.0260 REMARK 3 T33: 0.0491 T12: 0.0073 REMARK 3 T13: 0.0048 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.0961 L22: 0.7906 REMARK 3 L33: 2.3116 L12: -0.6212 REMARK 3 L13: 1.0503 L23: -0.9410 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.0087 S13: -0.0174 REMARK 3 S21: 0.0488 S22: 0.0126 S23: -0.0127 REMARK 3 S31: 0.0020 S32: -0.0533 S33: -0.0159 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 390 THROUGH 419 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8957 -20.9435 3.7059 REMARK 3 T TENSOR REMARK 3 T11: 0.0165 T22: 0.0371 REMARK 3 T33: 0.0633 T12: 0.0005 REMARK 3 T13: -0.0096 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.6943 L22: 0.3237 REMARK 3 L33: 4.7338 L12: 0.0671 REMARK 3 L13: -0.9267 L23: -0.0730 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0045 S13: -0.0078 REMARK 3 S21: -0.0073 S22: 0.0113 S23: 0.0168 REMARK 3 S31: -0.0772 S32: -0.0826 S33: -0.0440 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 420 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6926 -14.8509 13.4255 REMARK 3 T TENSOR REMARK 3 T11: 0.0478 T22: 0.0581 REMARK 3 T33: 0.0408 T12: -0.0049 REMARK 3 T13: -0.0102 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.8472 L22: 2.6497 REMARK 3 L33: 2.0529 L12: -0.1528 REMARK 3 L13: -0.2031 L23: -0.9270 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0987 S13: 0.0743 REMARK 3 S21: 0.1479 S22: -0.0124 S23: -0.0693 REMARK 3 S31: -0.1190 S32: 0.1041 S33: 0.0231 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 478 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5570 -12.7325 -2.6352 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0597 REMARK 3 T33: 0.0447 T12: 0.0118 REMARK 3 T13: -0.0077 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.3759 L22: 4.0402 REMARK 3 L33: 2.5223 L12: -0.3544 REMARK 3 L13: -0.2827 L23: 0.2023 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.0213 S13: 0.1413 REMARK 3 S21: 0.0798 S22: 0.0109 S23: 0.0175 REMARK 3 S31: -0.0982 S32: -0.0501 S33: 0.0081 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000243310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JJ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 PROTEIN : 0.10 M HEPES, 1.0 M REMARK 280 SODIUM CITRATE, PH 8.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.12000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.24000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.24000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 93.74700 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -54.12486 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 550 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 217 REMARK 465 GLU A 218 REMARK 465 SER A 219 REMARK 465 GLN A 220 REMARK 465 THR A 221 REMARK 465 LEU A 222 REMARK 465 SER A 375 REMARK 465 GLU A 376 REMARK 465 GLU A 377 REMARK 465 GLN A 378 REMARK 465 PRO A 379 REMARK 465 TYR A 380 REMARK 465 LEU A 381 REMARK 465 GLU A 382 REMARK 465 MET A 383 REMARK 465 ASP A 384 REMARK 465 LEU B 385 REMARK 465 SER B 386 REMARK 465 SER B 387 REMARK 465 PRO B 388 REMARK 465 GLN B 389 REMARK 465 ASP B 479 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 ARG B 391 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 431 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 305 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 430 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 B3L C 504 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 PHE C 505 C - N - CA ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 286 74.63 57.21 REMARK 500 LYS A 320 108.53 -55.25 REMARK 500 ASP B 398 32.01 70.39 REMARK 500 ASN B 408 -8.04 85.43 REMARK 500 B3L C 504 -80.53 -103.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 B3L C 504 19.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 6X8H A 217 384 UNP Q14790 CASP8_HUMAN 276 443 DBREF 6X8H B 385 479 UNP Q14790 CASP8_HUMAN 444 538 DBREF 6X8H C 501 506 PDB 6X8H 6X8H 501 506 SEQRES 1 A 168 SER GLU SER GLN THR LEU ASP LYS VAL TYR GLN MET LYS SEQRES 2 A 168 SER LYS PRO ARG GLY TYR CYS LEU ILE ILE ASN ASN HIS SEQRES 3 A 168 ASN PHE ALA LYS ALA ARG GLU LYS VAL PRO LYS LEU HIS SEQRES 4 A 168 SER ILE ARG ASP ARG ASN GLY THR HIS LEU ASP ALA GLY SEQRES 5 A 168 ALA LEU THR THR THR PHE GLU GLU LEU HIS PHE GLU ILE SEQRES 6 A 168 LYS PRO HIS ASP ASP CYS THR VAL GLU GLN ILE TYR GLU SEQRES 7 A 168 ILE LEU LYS ILE TYR GLN LEU MET ASP HIS SER ASN MET SEQRES 8 A 168 ASP CYS PHE ILE CYS CYS ILE LEU SER HIS GLY ASP LYS SEQRES 9 A 168 GLY ILE ILE TYR GLY THR ASP GLY GLN GLU ALA PRO ILE SEQRES 10 A 168 TYR GLU LEU THR SER GLN PHE THR GLY LEU LYS CYS PRO SEQRES 11 A 168 SER LEU ALA GLY LYS PRO LYS VAL PHE PHE ILE GLN ALA SEQRES 12 A 168 CYS GLN GLY ASP ASN TYR GLN LYS GLY ILE PRO VAL GLU SEQRES 13 A 168 THR ASP SER GLU GLU GLN PRO TYR LEU GLU MET ASP SEQRES 1 B 95 LEU SER SER PRO GLN THR ARG TYR ILE PRO ASP GLU ALA SEQRES 2 B 95 ASP PHE LEU LEU GLY MET ALA THR VAL ASN ASN CYS VAL SEQRES 3 B 95 SER TYR ARG ASN PRO ALA GLU GLY THR TRP TYR ILE GLN SEQRES 4 B 95 SER LEU CYS GLN SER LEU ARG GLU ARG CYS PRO ARG GLY SEQRES 5 B 95 ASP ASP ILE LEU THR ILE LEU THR GLU VAL ASN TYR GLU SEQRES 6 B 95 VAL SER ASN LYS ASP ASP LYS LYS ASN MET GLY LYS GLN SEQRES 7 B 95 MET PRO GLN PRO THR PHE THR LEU ARG LYS LYS LEU VAL SEQRES 8 B 95 PHE PRO SER ASP SEQRES 1 C 6 ACE 1MH ASP B3L PHE Y1Y HET ACE C 501 3 HET 1MH C 502 11 HET B3L C 504 9 HET Y1Y C 506 18 HETNAM ACE ACETYL GROUP HETNAM 1MH 3-PYRIDIN-3-YL-L-ALANINE HETNAM B3L (3S)-3-AMINO-5-METHYLHEXANOIC ACID HETNAM Y1Y 3-AMINO-2,3-DIDEOXY-5-O-(5-METHYLTHIOPHENE-2-CARBONYL)- HETNAM 2 Y1Y D-ERYTHRO-PENTONIC ACID HETSYN B3L (S)-BETA-3-HOMOLEUCINE FORMUL 3 ACE C2 H4 O FORMUL 3 1MH C8 H10 N2 O2 FORMUL 3 B3L C7 H15 N O2 FORMUL 3 Y1Y C11 H15 N O5 S FORMUL 4 HOH *211(H2 O) HELIX 1 AA1 PHE A 244 VAL A 251 1 8 HELIX 2 AA2 PRO A 252 HIS A 255 5 4 HELIX 3 AA3 GLY A 262 LEU A 277 1 16 HELIX 4 AA4 THR A 288 LEU A 301 1 14 HELIX 5 AA5 ILE A 333 SER A 338 1 6 HELIX 6 AA6 GLN A 339 THR A 341 5 3 HELIX 7 AA7 CYS A 345 ALA A 349 5 5 HELIX 8 AA8 TRP B 420 CYS B 433 1 14 HELIX 9 AA9 PRO B 434 GLY B 436 5 3 HELIX 10 AB1 ASP B 438 ASN B 452 1 15 SHEET 1 AA1 6 GLU A 280 ASP A 285 0 SHEET 2 AA1 6 TYR A 235 ASN A 240 1 N ASN A 240 O HIS A 284 SHEET 3 AA1 6 PHE A 310 LEU A 315 1 O CYS A 313 N LEU A 237 SHEET 4 AA1 6 LYS A 353 GLN A 358 1 O VAL A 354 N PHE A 310 SHEET 5 AA1 6 PHE B 399 MET B 403 1 O GLY B 402 N PHE A 355 SHEET 6 AA1 6 GLN B 465 PHE B 468 -1 O THR B 467 N LEU B 401 SHEET 1 AA2 3 GLY A 318 ASP A 319 0 SHEET 2 AA2 3 ILE A 322 TYR A 324 -1 O ILE A 322 N ASP A 319 SHEET 3 AA2 3 GLU A 330 PRO A 332 -1 O ALA A 331 N ILE A 323 SHEET 1 AA3 2 ARG B 413 ASN B 414 0 SHEET 2 AA3 2 GLY B 418 THR B 419 -1 O GLY B 418 N ASN B 414 LINK SG CYS A 360 C Y1Y C 506 1555 1555 1.81 LINK C ACE C 501 N 1MH C 502 1555 1555 1.33 LINK C 1MH C 502 N ASP C 503 1555 1555 1.31 LINK C ASP C 503 N B3L C 504 1555 1555 1.34 LINK C B3L C 504 N PHE C 505 1555 1555 1.31 LINK C PHE C 505 N Y1Y C 506 1555 1555 1.33 CISPEP 1 LYS A 231 PRO A 232 0 5.62 CRYST1 62.498 62.498 129.360 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016001 0.009238 0.000000 0.00000 SCALE2 0.000000 0.018476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007730 0.00000