HEADER HYDROLASE/HYDROLASE INHIBITOR 01-JUN-20 6X8I TITLE CASPASE-3 IN COMPLEX WITH KETOMETHYLENE INHIBITOR REVEALS TETRAHEDRAL TITLE 2 ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P17 (UNP RESIDUES 1-175); COMPND 5 SYNONYM: CASP-3,APOPAIN,CYSTEINE PROTEASE CPP32,CPP-32,PROTEIN YAMA, COMPND 6 SREBP CLEAVAGE ACTIVITY 1,SCA-1; COMPND 7 EC: 3.4.22.56; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CASPASE-3; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: P12 (UNP RESIDUES 176-277); COMPND 13 SYNONYM: CASP-3,APOPAIN,CYSTEINE PROTEASE CPP32,CPP-32,PROTEIN YAMA, COMPND 14 SREBP CLEAVAGE ACTIVITY 1,SCA-1; COMPND 15 EC: 3.4.22.56; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: KETOMETHYLENE INHIBITOR; COMPND 19 CHAIN: E, F; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP3, CPP32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CASP3, CPP32; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, TETRAHEDRAL, COMPLEX, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SOLANIA,J.H.XU,D.W.WOLAN REVDAT 4 15-NOV-23 6X8I 1 LINK ATOM REVDAT 3 18-OCT-23 6X8I 1 REMARK REVDAT 2 16-MAR-22 6X8I 1 REMARK REVDAT 1 02-JUN-21 6X8I 0 JRNL AUTH A.SOLANIA,J.H.XU,D.W.WOLAN JRNL TITL CASPASE-3 IN COMPLEX WITH KETOMETHYLENE INHIBITOR REVEALS JRNL TITL 2 TETRAHEDRAL ADDUCT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 90209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 4568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8290 - 4.6508 0.93 2904 155 0.1769 0.2140 REMARK 3 2 4.6508 - 3.6933 0.97 2899 164 0.1419 0.1494 REMARK 3 3 3.6933 - 3.2269 0.97 2874 149 0.1586 0.1983 REMARK 3 4 3.2269 - 2.9321 0.98 2894 144 0.1823 0.1997 REMARK 3 5 2.9321 - 2.7221 0.99 2890 174 0.1833 0.1932 REMARK 3 6 2.7221 - 2.5617 0.99 2909 144 0.1743 0.1493 REMARK 3 7 2.5617 - 2.4334 0.99 2877 171 0.1640 0.2036 REMARK 3 8 2.4334 - 2.3275 0.98 2871 154 0.1611 0.1999 REMARK 3 9 2.3275 - 2.2379 0.99 2874 159 0.1691 0.1996 REMARK 3 10 2.2379 - 2.1607 1.00 2911 154 0.1658 0.1806 REMARK 3 11 2.1607 - 2.0932 1.00 2874 157 0.1624 0.2000 REMARK 3 12 2.0932 - 2.0334 0.99 2906 145 0.1739 0.2091 REMARK 3 13 2.0334 - 1.9798 1.00 2867 148 0.1660 0.1946 REMARK 3 14 1.9798 - 1.9316 1.00 2871 169 0.1711 0.1771 REMARK 3 15 1.9316 - 1.8876 0.97 2802 141 0.1782 0.2346 REMARK 3 16 1.8876 - 1.8475 0.97 2790 163 0.1741 0.2190 REMARK 3 17 1.8475 - 1.8105 0.99 2861 149 0.1740 0.1763 REMARK 3 18 1.8105 - 1.7764 1.00 2870 160 0.1705 0.2086 REMARK 3 19 1.7764 - 1.7446 1.00 2892 149 0.1705 0.2160 REMARK 3 20 1.7446 - 1.7151 1.00 2857 154 0.1778 0.1897 REMARK 3 21 1.7151 - 1.6874 1.00 2896 155 0.1771 0.2316 REMARK 3 22 1.6874 - 1.6614 1.00 2855 139 0.1774 0.2041 REMARK 3 23 1.6614 - 1.6370 1.00 2852 145 0.1787 0.2295 REMARK 3 24 1.6370 - 1.6140 1.00 2907 161 0.1831 0.2181 REMARK 3 25 1.6140 - 1.5921 0.97 2754 162 0.1840 0.2263 REMARK 3 26 1.5921 - 1.5715 0.94 2687 154 0.1930 0.2491 REMARK 3 27 1.5715 - 1.5518 0.98 2857 159 0.2104 0.2755 REMARK 3 28 1.5518 - 1.5331 0.99 2859 128 0.2139 0.2561 REMARK 3 29 1.5331 - 1.5153 0.99 2847 136 0.2442 0.2688 REMARK 3 30 1.5153 - 1.5000 0.91 2634 126 0.2320 0.2577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000243339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90329 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.498 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.2140 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 PROTEIN : 0.10 M SODIUM CITRATE, REMARK 280 0.010 M DTT, 0.02% SODIUM AZIDE, 10% PEG6000, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.32600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.57250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.50350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.57250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.32600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.50350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 SER A 12 REMARK 465 ILE A 13 REMARK 465 LYS A 14 REMARK 465 ASN A 15 REMARK 465 LEU A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 LYS A 19 REMARK 465 ILE A 20 REMARK 465 ILE A 21 REMARK 465 HIS A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 GLU A 25 REMARK 465 SER A 26 REMARK 465 MET A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 ILE A 31 REMARK 465 SER A 32 REMARK 465 LEU A 33 REMARK 465 ASP A 175 REMARK 465 SER C 176 REMARK 465 GLY C 177 REMARK 465 VAL C 178 REMARK 465 ASP C 179 REMARK 465 ASP C 180 REMARK 465 ASP C 181 REMARK 465 MET C 182 REMARK 465 ALA C 183 REMARK 465 CYS C 184 REMARK 465 LEU C 278 REMARK 465 GLU C 279 REMARK 465 HIS C 280 REMARK 465 HIS C 281 REMARK 465 HIS C 282 REMARK 465 HIS C 283 REMARK 465 HIS C 284 REMARK 465 HIS C 285 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 VAL B 8 REMARK 465 ASP B 9 REMARK 465 SER B 10 REMARK 465 LYS B 11 REMARK 465 SER B 12 REMARK 465 ILE B 13 REMARK 465 LYS B 14 REMARK 465 ASN B 15 REMARK 465 LEU B 16 REMARK 465 GLU B 17 REMARK 465 PRO B 18 REMARK 465 LYS B 19 REMARK 465 ILE B 20 REMARK 465 ILE B 21 REMARK 465 HIS B 22 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 GLU B 25 REMARK 465 SER B 26 REMARK 465 MET B 27 REMARK 465 ASP B 28 REMARK 465 SER B 29 REMARK 465 GLY B 30 REMARK 465 ILE B 31 REMARK 465 SER B 32 REMARK 465 LEU B 33 REMARK 465 ASP B 175 REMARK 465 SER D 176 REMARK 465 GLY D 177 REMARK 465 VAL D 178 REMARK 465 ASP D 179 REMARK 465 ASP D 180 REMARK 465 ASP D 181 REMARK 465 MET D 182 REMARK 465 ALA D 183 REMARK 465 CYS D 184 REMARK 465 HIS D 277 REMARK 465 LEU D 278 REMARK 465 GLU D 279 REMARK 465 HIS D 280 REMARK 465 HIS D 281 REMARK 465 HIS D 282 REMARK 465 HIS D 283 REMARK 465 HIS D 284 REMARK 465 HIS D 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 HIS C 185 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 210 CG CD CE NZ REMARK 470 LYS C 224 CG CD CE NZ REMARK 470 GLN C 225 CG CD OE1 NE2 REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 HIS C 277 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 34 CG OD1 OD2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 HIS D 185 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 210 CG CD CE NZ REMARK 470 LYS D 224 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 57 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG D 241 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG D 241 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 229 -58.58 -135.00 REMARK 500 ARG B 144 154.92 -49.01 REMARK 500 LYS D 229 -44.97 -134.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 315 DISTANCE = 6.06 ANGSTROMS DBREF 6X8I A 1 175 UNP P42574 CASP3_HUMAN 1 175 DBREF 6X8I C 176 277 UNP P42574 CASP3_HUMAN 176 277 DBREF 6X8I B 1 175 UNP P42574 CASP3_HUMAN 1 175 DBREF 6X8I D 176 277 UNP P42574 CASP3_HUMAN 176 277 DBREF 6X8I E 303 401 PDB 6X8I 6X8I 303 401 DBREF 6X8I F 403 501 PDB 6X8I 6X8I 403 501 SEQADV 6X8I LEU C 278 UNP P42574 EXPRESSION TAG SEQADV 6X8I GLU C 279 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS C 280 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS C 281 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS C 282 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS C 283 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS C 284 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS C 285 UNP P42574 EXPRESSION TAG SEQADV 6X8I LEU D 278 UNP P42574 EXPRESSION TAG SEQADV 6X8I GLU D 279 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS D 280 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS D 281 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS D 282 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS D 283 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS D 284 UNP P42574 EXPRESSION TAG SEQADV 6X8I HIS D 285 UNP P42574 EXPRESSION TAG SEQRES 1 A 175 MET GLU ASN THR GLU ASN SER VAL ASP SER LYS SER ILE SEQRES 2 A 175 LYS ASN LEU GLU PRO LYS ILE ILE HIS GLY SER GLU SER SEQRES 3 A 175 MET ASP SER GLY ILE SER LEU ASP ASN SER TYR LYS MET SEQRES 4 A 175 ASP TYR PRO GLU MET GLY LEU CYS ILE ILE ILE ASN ASN SEQRES 5 A 175 LYS ASN PHE HIS LYS SER THR GLY MET THR SER ARG SER SEQRES 6 A 175 GLY THR ASP VAL ASP ALA ALA ASN LEU ARG GLU THR PHE SEQRES 7 A 175 ARG ASN LEU LYS TYR GLU VAL ARG ASN LYS ASN ASP LEU SEQRES 8 A 175 THR ARG GLU GLU ILE VAL GLU LEU MET ARG ASP VAL SER SEQRES 9 A 175 LYS GLU ASP HIS SER LYS ARG SER SER PHE VAL CYS VAL SEQRES 10 A 175 LEU LEU SER HIS GLY GLU GLU GLY ILE ILE PHE GLY THR SEQRES 11 A 175 ASN GLY PRO VAL ASP LEU LYS LYS ILE THR ASN PHE PHE SEQRES 12 A 175 ARG GLY ASP ARG CYS ARG SER LEU THR GLY LYS PRO LYS SEQRES 13 A 175 LEU PHE ILE ILE GLN ALA CYS ARG GLY THR GLU LEU ASP SEQRES 14 A 175 CYS GLY ILE GLU THR ASP SEQRES 1 C 110 SER GLY VAL ASP ASP ASP MET ALA CYS HIS LYS ILE PRO SEQRES 2 C 110 VAL GLU ALA ASP PHE LEU TYR ALA TYR SER THR ALA PRO SEQRES 3 C 110 GLY TYR TYR SER TRP ARG ASN SER LYS ASP GLY SER TRP SEQRES 4 C 110 PHE ILE GLN SER LEU CYS ALA MET LEU LYS GLN TYR ALA SEQRES 5 C 110 ASP LYS LEU GLU PHE MET HIS ILE LEU THR ARG VAL ASN SEQRES 6 C 110 ARG LYS VAL ALA THR GLU PHE GLU SER PHE SER PHE ASP SEQRES 7 C 110 ALA THR PHE HIS ALA LYS LYS GLN ILE PRO CYS ILE VAL SEQRES 8 C 110 SER MET LEU THR LYS GLU LEU TYR PHE TYR HIS LEU GLU SEQRES 9 C 110 HIS HIS HIS HIS HIS HIS SEQRES 1 B 175 MET GLU ASN THR GLU ASN SER VAL ASP SER LYS SER ILE SEQRES 2 B 175 LYS ASN LEU GLU PRO LYS ILE ILE HIS GLY SER GLU SER SEQRES 3 B 175 MET ASP SER GLY ILE SER LEU ASP ASN SER TYR LYS MET SEQRES 4 B 175 ASP TYR PRO GLU MET GLY LEU CYS ILE ILE ILE ASN ASN SEQRES 5 B 175 LYS ASN PHE HIS LYS SER THR GLY MET THR SER ARG SER SEQRES 6 B 175 GLY THR ASP VAL ASP ALA ALA ASN LEU ARG GLU THR PHE SEQRES 7 B 175 ARG ASN LEU LYS TYR GLU VAL ARG ASN LYS ASN ASP LEU SEQRES 8 B 175 THR ARG GLU GLU ILE VAL GLU LEU MET ARG ASP VAL SER SEQRES 9 B 175 LYS GLU ASP HIS SER LYS ARG SER SER PHE VAL CYS VAL SEQRES 10 B 175 LEU LEU SER HIS GLY GLU GLU GLY ILE ILE PHE GLY THR SEQRES 11 B 175 ASN GLY PRO VAL ASP LEU LYS LYS ILE THR ASN PHE PHE SEQRES 12 B 175 ARG GLY ASP ARG CYS ARG SER LEU THR GLY LYS PRO LYS SEQRES 13 B 175 LEU PHE ILE ILE GLN ALA CYS ARG GLY THR GLU LEU ASP SEQRES 14 B 175 CYS GLY ILE GLU THR ASP SEQRES 1 D 110 SER GLY VAL ASP ASP ASP MET ALA CYS HIS LYS ILE PRO SEQRES 2 D 110 VAL GLU ALA ASP PHE LEU TYR ALA TYR SER THR ALA PRO SEQRES 3 D 110 GLY TYR TYR SER TRP ARG ASN SER LYS ASP GLY SER TRP SEQRES 4 D 110 PHE ILE GLN SER LEU CYS ALA MET LEU LYS GLN TYR ALA SEQRES 5 D 110 ASP LYS LEU GLU PHE MET HIS ILE LEU THR ARG VAL ASN SEQRES 6 D 110 ARG LYS VAL ALA THR GLU PHE GLU SER PHE SER PHE ASP SEQRES 7 D 110 ALA THR PHE HIS ALA LYS LYS GLN ILE PRO CYS ILE VAL SEQRES 8 D 110 SER MET LEU THR LYS GLU LEU TYR PHE TYR HIS LEU GLU SEQRES 9 D 110 HIS HIS HIS HIS HIS HIS SEQRES 1 E 5 ACE ASP GLU VAL Y2Y SEQRES 1 F 5 ACE ASP GLU VAL Y2Y HET ACE E 303 3 HET Y2Y E 401 13 HET ACE F 403 3 HET Y2Y F 501 13 HETNAM ACE ACETYL GROUP HETNAM Y2Y (3S,4R)-3-AMINO-4-HYDROXYHEPTANEDIOIC ACID FORMUL 5 ACE 2(C2 H4 O) FORMUL 5 Y2Y 2(C7 H13 N O5) FORMUL 7 HOH *355(H2 O) HELIX 1 AA1 HIS A 56 GLY A 60 5 5 HELIX 2 AA2 GLY A 66 LEU A 81 1 16 HELIX 3 AA3 THR A 92 GLU A 106 1 15 HELIX 4 AA4 LEU A 136 PHE A 142 1 7 HELIX 5 AA5 CYS A 148 THR A 152 5 5 HELIX 6 AA6 TRP C 214 ALA C 227 1 14 HELIX 7 AA7 GLU C 231 PHE C 247 1 17 HELIX 8 AA8 ASP C 253 HIS C 257 5 5 HELIX 9 AA9 HIS B 56 GLY B 60 5 5 HELIX 10 AB1 GLY B 66 LEU B 81 1 16 HELIX 11 AB2 THR B 92 LYS B 105 1 14 HELIX 12 AB3 LEU B 136 PHE B 142 1 7 HELIX 13 AB4 CYS B 148 THR B 152 5 5 HELIX 14 AB5 TRP D 214 ALA D 227 1 14 HELIX 15 AB6 GLU D 231 PHE D 247 1 17 HELIX 16 AB7 ASP D 253 HIS D 257 5 5 SHEET 1 AA112 GLU A 84 ASN A 89 0 SHEET 2 AA112 GLU A 43 ASN A 51 1 N ASN A 51 O LYS A 88 SHEET 3 AA112 ARG A 111 LEU A 119 1 O VAL A 117 N ILE A 48 SHEET 4 AA112 LYS A 156 GLN A 161 1 O LEU A 157 N PHE A 114 SHEET 5 AA112 PHE C 193 TYR C 197 1 O LEU C 194 N PHE A 158 SHEET 6 AA112 CYS C 264 SER C 267 -1 O VAL C 266 N TYR C 195 SHEET 7 AA112 CYS D 264 SER D 267 -1 O ILE D 265 N SER C 267 SHEET 8 AA112 PHE D 193 TYR D 197 -1 N TYR D 195 O VAL D 266 SHEET 9 AA112 LYS B 156 GLN B 161 1 N PHE B 158 O ALA D 196 SHEET 10 AA112 ARG B 111 LEU B 119 1 N PHE B 114 O LEU B 157 SHEET 11 AA112 GLU B 43 ASN B 51 1 N ILE B 48 O VAL B 117 SHEET 12 AA112 GLU B 84 ASN B 89 1 O LYS B 88 N ASN B 51 SHEET 1 AA2 3 GLY A 122 GLU A 123 0 SHEET 2 AA2 3 ILE A 126 GLY A 129 -1 O ILE A 126 N GLU A 123 SHEET 3 AA2 3 GLY A 132 ASP A 135 -1 O GLY A 132 N GLY A 129 SHEET 1 AA3 2 ILE A 172 GLU A 173 0 SHEET 2 AA3 2 LYS D 186 ILE D 187 -1 O ILE D 187 N ILE A 172 SHEET 1 AA4 2 LYS C 186 ILE C 187 0 SHEET 2 AA4 2 ILE B 172 GLU B 173 -1 O ILE B 172 N ILE C 187 SHEET 1 AA5 2 ARG C 207 ASN C 208 0 SHEET 2 AA5 2 GLY C 212 SER C 213 -1 O GLY C 212 N ASN C 208 SHEET 1 AA6 3 GLY B 122 GLU B 123 0 SHEET 2 AA6 3 ILE B 126 GLY B 129 -1 O ILE B 126 N GLU B 123 SHEET 3 AA6 3 GLY B 132 ASP B 135 -1 O GLY B 132 N GLY B 129 SHEET 1 AA7 2 ARG D 207 ASN D 208 0 SHEET 2 AA7 2 GLY D 212 SER D 213 -1 O GLY D 212 N ASN D 208 LINK SG CYS A 163 C Y2Y E 401 1555 1555 1.86 LINK SG CYS B 163 C Y2Y F 501 1555 1555 1.92 LINK C ACE E 303 N ASP E 304 1555 1555 1.30 LINK C VAL E 306 N Y2Y E 401 1555 1555 1.37 LINK C ACE F 403 N ASP F 404 1555 1555 1.31 LINK C VAL F 406 N Y2Y F 501 1555 1555 1.36 CRYST1 68.652 85.007 97.145 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010294 0.00000