HEADER HYDROLASE/HYDROLASE INHIBITOR 01-JUN-20 6X8L TITLE CASPASE-7 IN COMPLEX WITH ELONGATED KETOMETHYLENE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P20 (UNP RESIDUES 34-231); COMPND 5 SYNONYM: CASP-7,APOPTOTIC PROTEASE MCH-3,CMH-1,ICE-LIKE APOPTOTIC COMPND 6 PROTEASE 3,ICE-LAP3; COMPND 7 EC: 3.4.22.60; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CASPASE-7; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: P11 (UNP RESIDUES 232-336); COMPND 13 SYNONYM: CASP-7,APOPTOTIC PROTEASE MCH-3,CMH-1,ICE-LIKE APOPTOTIC COMPND 14 PROTEASE 3,ICE-LAP3; COMPND 15 EC: 3.4.22.60; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: KETOMETHYLENE INHIBITOR; COMPND 19 CHAIN: E, F; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP7, MCH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CASP7, MCH3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, TETRAHEDRAL, COMPLEX, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SOLANIA,J.H.XU,D.W.WOLAN REVDAT 4 15-NOV-23 6X8L 1 LINK ATOM REVDAT 3 18-OCT-23 6X8L 1 REMARK REVDAT 2 16-MAR-22 6X8L 1 REMARK REVDAT 1 02-JUN-21 6X8L 0 JRNL AUTH A.SOLANIA,J.H.XU,D.W.WOLAN JRNL TITL CASPASE-7 IN COMPLEX WITH ELONGATED KETOMETHYLENE INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 30516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9700 - 5.4376 0.89 2613 148 0.1781 0.2018 REMARK 3 2 5.4376 - 4.3173 0.95 2646 155 0.1493 0.1751 REMARK 3 3 4.3173 - 3.7719 0.94 2625 126 0.1533 0.1700 REMARK 3 4 3.7719 - 3.4272 0.96 2689 136 0.1625 0.2188 REMARK 3 5 3.4272 - 3.1817 0.97 2676 95 0.1940 0.2263 REMARK 3 6 3.1817 - 2.9941 0.96 2648 145 0.1902 0.2412 REMARK 3 7 2.9941 - 2.8442 0.96 2573 149 0.1973 0.2374 REMARK 3 8 2.8442 - 2.7204 0.98 2661 170 0.2172 0.2803 REMARK 3 9 2.7204 - 2.6157 0.98 2659 138 0.2350 0.2935 REMARK 3 10 2.6157 - 2.5255 0.98 2627 166 0.2450 0.3072 REMARK 3 11 2.5255 - 2.4500 0.93 2538 133 0.2534 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000244601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49594 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.447 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JJ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 PROTEIN : 0.15 M SODIUM CITRATE, REMARK 280 1.45 M SODIUM FORMATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.85333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.42667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.42667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.85333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 CYS A 7 REMARK 465 ILE A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 ASN A 18 REMARK 465 GLU A 19 REMARK 465 ASP A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 ASP A 23 REMARK 465 ALA A 24 REMARK 465 LYS A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 ARG A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 PHE A 31 REMARK 465 VAL A 32 REMARK 465 PRO A 33 REMARK 465 SER A 34 REMARK 465 LEU A 35 REMARK 465 PHE A 36 REMARK 465 SER A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 39 REMARK 465 LYS A 40 REMARK 465 LYS A 41 REMARK 465 ASN A 42 REMARK 465 VAL A 43 REMARK 465 THR A 44 REMARK 465 MET A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 ILE A 48 REMARK 465 LYS A 49 REMARK 465 THR A 50 REMARK 465 THR A 51 REMARK 465 ARG A 52 REMARK 465 ASP A 53 REMARK 465 ARG A 54 REMARK 465 VAL A 55 REMARK 465 PRO A 56 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 SER C 199 REMARK 465 GLY C 200 REMARK 465 PRO C 201 REMARK 465 ILE C 202 REMARK 465 ASN C 203 REMARK 465 ASP C 204 REMARK 465 THR C 205 REMARK 465 ASP C 206 REMARK 465 ALA C 207 REMARK 465 ASN C 208 REMARK 465 PRO C 209 REMARK 465 ARG C 210 REMARK 465 TYR C 211 REMARK 465 GLN C 303 REMARK 465 LEU C 304 REMARK 465 GLU C 305 REMARK 465 HIS C 306 REMARK 465 HIS C 307 REMARK 465 HIS C 308 REMARK 465 HIS C 309 REMARK 465 HIS C 310 REMARK 465 HIS C 311 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 CYS B 7 REMARK 465 ILE B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 10 REMARK 465 GLN B 11 REMARK 465 GLY B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 ASP B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 ASN B 18 REMARK 465 GLU B 19 REMARK 465 ASP B 20 REMARK 465 SER B 21 REMARK 465 VAL B 22 REMARK 465 ASP B 23 REMARK 465 ALA B 24 REMARK 465 LYS B 25 REMARK 465 PRO B 26 REMARK 465 ASP B 27 REMARK 465 ARG B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 PHE B 31 REMARK 465 VAL B 32 REMARK 465 PRO B 33 REMARK 465 SER B 34 REMARK 465 LEU B 35 REMARK 465 PHE B 36 REMARK 465 SER B 37 REMARK 465 LYS B 38 REMARK 465 LYS B 39 REMARK 465 LYS B 40 REMARK 465 LYS B 41 REMARK 465 ASN B 42 REMARK 465 VAL B 43 REMARK 465 THR B 44 REMARK 465 MET B 45 REMARK 465 ARG B 46 REMARK 465 SER B 47 REMARK 465 ILE B 48 REMARK 465 LYS B 49 REMARK 465 THR B 50 REMARK 465 THR B 51 REMARK 465 ARG B 52 REMARK 465 ASP B 53 REMARK 465 ARG B 54 REMARK 465 VAL B 55 REMARK 465 PRO B 56 REMARK 465 ALA B 197 REMARK 465 ASP B 198 REMARK 465 SER D 199 REMARK 465 GLY D 200 REMARK 465 PRO D 201 REMARK 465 ILE D 202 REMARK 465 ASN D 203 REMARK 465 ASP D 204 REMARK 465 THR D 205 REMARK 465 ASP D 206 REMARK 465 ALA D 207 REMARK 465 ASN D 208 REMARK 465 PRO D 209 REMARK 465 ARG D 210 REMARK 465 TYR D 211 REMARK 465 GLN D 303 REMARK 465 LEU D 304 REMARK 465 GLU D 305 REMARK 465 HIS D 306 REMARK 465 HIS D 307 REMARK 465 HIS D 308 REMARK 465 HIS D 309 REMARK 465 HIS D 310 REMARK 465 HIS D 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 57 OG1 CG2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 GLN A 196 CG CD OE1 NE2 REMARK 470 ASP C 278 CG OD1 OD2 REMARK 470 GLU C 284 CG CD OE1 OE2 REMARK 470 THR B 57 OG1 CG2 REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 LYS D 212 CG CD CE NZ REMARK 470 ARG D 237 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 250 CG CD OE1 OE2 REMARK 470 GLU D 251 CG CD OE1 OE2 REMARK 470 GLN D 276 CG CD OE1 NE2 REMARK 470 ASP D 278 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL E 404 O - C - N ANGL. DEV. = -13.4 DEGREES REMARK 500 Y2Y E 405 C - N - CA ANGL. DEV. = 22.8 DEGREES REMARK 500 VAL F 404 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 Y2Y F 405 C - N - CA ANGL. DEV. = 23.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 171 76.01 -156.57 REMARK 500 ALA A 185 147.30 -171.54 REMARK 500 ASP B 113 71.99 30.45 REMARK 500 ASN B 148 -0.73 70.45 REMARK 500 CYS B 171 76.36 -165.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL F 404 Y2Y F 405 146.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 6X8L A 1 198 UNP P55210 CASP7_HUMAN 34 231 DBREF 6X8L C 199 303 UNP P55210 CASP7_HUMAN 232 336 DBREF 6X8L B 1 198 UNP P55210 CASP7_HUMAN 34 231 DBREF 6X8L D 199 303 UNP P55210 CASP7_HUMAN 232 336 DBREF 6X8L E 401 408 PDB 6X8L 6X8L 401 408 DBREF 6X8L F 401 408 PDB 6X8L 6X8L 401 408 SEQADV 6X8L LEU C 304 UNP P55210 EXPRESSION TAG SEQADV 6X8L GLU C 305 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS C 306 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS C 307 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS C 308 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS C 309 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS C 310 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS C 311 UNP P55210 EXPRESSION TAG SEQADV 6X8L LEU D 304 UNP P55210 EXPRESSION TAG SEQADV 6X8L GLU D 305 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS D 306 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS D 307 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS D 308 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS D 309 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS D 310 UNP P55210 EXPRESSION TAG SEQADV 6X8L HIS D 311 UNP P55210 EXPRESSION TAG SEQRES 1 A 198 MET ALA ASP ASP GLN GLY CYS ILE GLU GLU GLN GLY VAL SEQRES 2 A 198 GLU ASP SER ALA ASN GLU ASP SER VAL ASP ALA LYS PRO SEQRES 3 A 198 ASP ARG SER SER PHE VAL PRO SER LEU PHE SER LYS LYS SEQRES 4 A 198 LYS LYS ASN VAL THR MET ARG SER ILE LYS THR THR ARG SEQRES 5 A 198 ASP ARG VAL PRO THR TYR GLN TYR ASN MET ASN PHE GLU SEQRES 6 A 198 LYS LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS ASN PHE SEQRES 7 A 198 ASP LYS VAL THR GLY MET GLY VAL ARG ASN GLY THR ASP SEQRES 8 A 198 LYS ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SER LEU SEQRES 9 A 198 GLY PHE ASP VAL ILE VAL TYR ASN ASP CYS SER CYS ALA SEQRES 10 A 198 LYS MET GLN ASP LEU LEU LYS LYS ALA SER GLU GLU ASP SEQRES 11 A 198 HIS THR ASN ALA ALA CYS PHE ALA CYS ILE LEU LEU SER SEQRES 12 A 198 HIS GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP GLY VAL SEQRES 13 A 198 THR PRO ILE LYS ASP LEU THR ALA HIS PHE ARG GLY ASP SEQRES 14 A 198 ARG CYS LYS THR LEU LEU GLU LYS PRO LYS LEU PHE PHE SEQRES 15 A 198 ILE GLN ALA CYS ARG GLY THR GLU LEU ASP ASP GLY ILE SEQRES 16 A 198 GLN ALA ASP SEQRES 1 C 113 SER GLY PRO ILE ASN ASP THR ASP ALA ASN PRO ARG TYR SEQRES 2 C 113 LYS ILE PRO VAL GLU ALA ASP PHE LEU PHE ALA TYR SER SEQRES 3 C 113 THR VAL PRO GLY TYR TYR SER TRP ARG SER PRO GLY ARG SEQRES 4 C 113 GLY SER TRP PHE VAL GLN ALA LEU CYS SER ILE LEU GLU SEQRES 5 C 113 GLU HIS GLY LYS ASP LEU GLU ILE MET GLN ILE LEU THR SEQRES 6 C 113 ARG VAL ASN ASP ARG VAL ALA ARG HIS PHE GLU SER GLN SEQRES 7 C 113 SER ASP ASP PRO HIS PHE HIS GLU LYS LYS GLN ILE PRO SEQRES 8 C 113 CYS VAL VAL SER MET LEU THR LYS GLU LEU TYR PHE SER SEQRES 9 C 113 GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 198 MET ALA ASP ASP GLN GLY CYS ILE GLU GLU GLN GLY VAL SEQRES 2 B 198 GLU ASP SER ALA ASN GLU ASP SER VAL ASP ALA LYS PRO SEQRES 3 B 198 ASP ARG SER SER PHE VAL PRO SER LEU PHE SER LYS LYS SEQRES 4 B 198 LYS LYS ASN VAL THR MET ARG SER ILE LYS THR THR ARG SEQRES 5 B 198 ASP ARG VAL PRO THR TYR GLN TYR ASN MET ASN PHE GLU SEQRES 6 B 198 LYS LEU GLY LYS CYS ILE ILE ILE ASN ASN LYS ASN PHE SEQRES 7 B 198 ASP LYS VAL THR GLY MET GLY VAL ARG ASN GLY THR ASP SEQRES 8 B 198 LYS ASP ALA GLU ALA LEU PHE LYS CYS PHE ARG SER LEU SEQRES 9 B 198 GLY PHE ASP VAL ILE VAL TYR ASN ASP CYS SER CYS ALA SEQRES 10 B 198 LYS MET GLN ASP LEU LEU LYS LYS ALA SER GLU GLU ASP SEQRES 11 B 198 HIS THR ASN ALA ALA CYS PHE ALA CYS ILE LEU LEU SER SEQRES 12 B 198 HIS GLY GLU GLU ASN VAL ILE TYR GLY LYS ASP GLY VAL SEQRES 13 B 198 THR PRO ILE LYS ASP LEU THR ALA HIS PHE ARG GLY ASP SEQRES 14 B 198 ARG CYS LYS THR LEU LEU GLU LYS PRO LYS LEU PHE PHE SEQRES 15 B 198 ILE GLN ALA CYS ARG GLY THR GLU LEU ASP ASP GLY ILE SEQRES 16 B 198 GLN ALA ASP SEQRES 1 D 113 SER GLY PRO ILE ASN ASP THR ASP ALA ASN PRO ARG TYR SEQRES 2 D 113 LYS ILE PRO VAL GLU ALA ASP PHE LEU PHE ALA TYR SER SEQRES 3 D 113 THR VAL PRO GLY TYR TYR SER TRP ARG SER PRO GLY ARG SEQRES 4 D 113 GLY SER TRP PHE VAL GLN ALA LEU CYS SER ILE LEU GLU SEQRES 5 D 113 GLU HIS GLY LYS ASP LEU GLU ILE MET GLN ILE LEU THR SEQRES 6 D 113 ARG VAL ASN ASP ARG VAL ALA ARG HIS PHE GLU SER GLN SEQRES 7 D 113 SER ASP ASP PRO HIS PHE HIS GLU LYS LYS GLN ILE PRO SEQRES 8 D 113 CYS VAL VAL SER MET LEU THR LYS GLU LEU TYR PHE SER SEQRES 9 D 113 GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 8 ACE ASP GLU VAL Y2Y ALA ALA ALA SEQRES 1 F 8 ACE ASP GLU VAL Y2Y ALA ALA ALA HET ACE E 401 3 HET Y2Y E 405 12 HET ACE F 401 3 HET Y2Y F 405 12 HETNAM ACE ACETYL GROUP HETNAM Y2Y (3S,4R)-3-AMINO-4-HYDROXYHEPTANEDIOIC ACID FORMUL 5 ACE 2(C2 H4 O) FORMUL 5 Y2Y 2(C7 H13 N O5) FORMUL 7 HOH *61(H2 O) HELIX 1 AA1 ASP A 79 GLY A 83 5 5 HELIX 2 AA2 GLY A 89 GLY A 105 1 17 HELIX 3 AA3 SER A 115 GLU A 129 1 15 HELIX 4 AA4 ILE A 159 ALA A 164 1 6 HELIX 5 AA5 HIS A 165 LEU A 175 5 11 HELIX 6 AA6 TRP C 240 GLY C 253 1 14 HELIX 7 AA7 GLU C 257 PHE C 273 1 17 HELIX 8 AA8 ASP C 279 HIS C 283 5 5 HELIX 9 AA9 ASP B 79 GLY B 83 5 5 HELIX 10 AB1 GLY B 89 GLY B 105 1 17 HELIX 11 AB2 SER B 115 GLU B 129 1 15 HELIX 12 AB3 ILE B 159 ALA B 164 1 6 HELIX 13 AB4 HIS B 165 ARG B 167 5 3 HELIX 14 AB5 CYS B 171 LEU B 175 5 5 HELIX 15 AB6 TRP D 240 GLY D 253 1 14 HELIX 16 AB7 GLU D 257 PHE D 273 1 17 HELIX 17 AB8 ASP D 279 HIS D 283 5 5 SHEET 1 AA112 ASP A 107 ASN A 112 0 SHEET 2 AA112 LYS A 69 ASN A 74 1 N ILE A 72 O ILE A 109 SHEET 3 AA112 PHE A 137 LEU A 142 1 O ILE A 140 N ILE A 73 SHEET 4 AA112 LYS A 179 GLN A 184 1 O LEU A 180 N PHE A 137 SHEET 5 AA112 PHE C 219 TYR C 223 1 O ALA C 222 N PHE A 181 SHEET 6 AA112 CYS C 290 SER C 293 -1 O VAL C 292 N PHE C 221 SHEET 7 AA112 CYS D 290 SER D 293 -1 O SER D 293 N VAL C 291 SHEET 8 AA112 PHE D 219 TYR D 223 -1 N PHE D 221 O VAL D 292 SHEET 9 AA112 LYS B 179 GLN B 184 1 N PHE B 181 O ALA D 222 SHEET 10 AA112 ALA B 134 LEU B 142 1 N PHE B 137 O LEU B 180 SHEET 11 AA112 LYS B 66 ASN B 74 1 N ILE B 73 O ILE B 140 SHEET 12 AA112 PHE B 106 ASN B 112 1 O TYR B 111 N ILE B 72 SHEET 1 AA2 3 GLY A 145 GLU A 146 0 SHEET 2 AA2 3 VAL A 149 TYR A 151 -1 O VAL A 149 N GLU A 146 SHEET 3 AA2 3 VAL A 156 PRO A 158 -1 O THR A 157 N ILE A 150 SHEET 1 AA3 2 GLY A 188 GLU A 190 0 SHEET 2 AA3 2 GLY C 228 TYR C 229 1 O GLY C 228 N GLU A 190 SHEET 1 AA4 3 GLY C 238 SER C 239 0 SHEET 2 AA4 3 TRP C 232 SER C 234 -1 N SER C 234 O GLY C 238 SHEET 3 AA4 3 GLU E 403 VAL E 404 -1 O GLU E 403 N ARG C 233 SHEET 1 AA5 3 GLY B 145 GLU B 146 0 SHEET 2 AA5 3 VAL B 149 TYR B 151 -1 O VAL B 149 N GLU B 146 SHEET 3 AA5 3 VAL B 156 PRO B 158 -1 O THR B 157 N ILE B 150 SHEET 1 AA6 3 GLY D 238 SER D 239 0 SHEET 2 AA6 3 TRP D 232 SER D 234 -1 N SER D 234 O GLY D 238 SHEET 3 AA6 3 GLU F 403 VAL F 404 -1 O GLU F 403 N ARG D 233 LINK SG CYS A 186 C Y2Y E 405 1555 1555 1.90 LINK SG CYS B 186 C Y2Y F 405 1555 1555 1.91 LINK C ACE E 401 N ASP E 402 1555 1555 1.34 LINK C VAL E 404 N Y2Y E 405 1555 1555 1.37 LINK C3 Y2Y E 405 N ALA E 406 1555 1555 1.37 LINK C ACE F 401 N ASP F 402 1555 1555 1.35 LINK C VAL F 404 N Y2Y F 405 1555 1555 1.37 LINK C3 Y2Y F 405 N ALA F 406 1555 1555 1.37 CRYST1 88.296 88.296 187.280 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011326 0.006539 0.000000 0.00000 SCALE2 0.000000 0.013078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005340 0.00000