data_6X8M # _entry.id 6X8M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6X8M pdb_00006x8m 10.2210/pdb6x8m/pdb WWPDB D_1000249724 ? ? EMDB EMD-22094 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-06-10 2 'Structure model' 1 1 2021-04-21 3 'Structure model' 1 2 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' citation 6 3 'Structure model' database_2 7 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_ISSN' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_oper_list.name' 5 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 3 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6X8M _pdbx_database_status.recvd_initial_deposition_date 2020-06-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category FoldIt _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'CryoEM structure of the holo-SrpI encpasulin complex from Synechococcus elongatus PCC 7942' EMD-22094 'associated EM volume' EMDB 'CryoEM structure of the apo-SrpI encapasulin complex from Synechococcus elongatus PCC 7942' EMD-22095 'other EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'LaFrance, B.J.' 1 0000-0003-0229-5255 'Nichols, R.J.' 2 0000-0002-8476-0554 'Phillips, N.R.' 3 ? 'Oltrogge, L.M.' 4 0000-0001-5716-9980 'Valentin-Alvarado, L.E.' 5 0000-0001-7988-8556 'Bischoff, A.J.' 6 ? 'Savage, D.F.' 7 0000-0003-0042-2257 'Nogales, E.' 8 0000-0001-9816-3681 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary Elife ? ? 2050-084X ? ? 10 ? ? ? 'Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism.' 2021 ? 10.7554/eLife.59288 33821786 ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? 2692-8205 ? ? ? ? ? ? 'Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism' 2020 ? 10.1101/2020.05.24.113720 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nichols, R.J.' 1 ? primary 'LaFrance, B.' 2 ? primary 'Phillips, N.R.' 3 ? primary 'Radford, D.R.' 4 ? primary 'Oltrogge, L.M.' 5 0000-0001-5716-9980 primary 'Valentin-Alvarado, L.E.' 6 ? primary 'Bischoff, A.J.' 7 ? primary 'Nogales, E.' 8 0000-0001-9816-3681 primary 'Savage, D.F.' 9 0000-0003-0042-2257 1 'Nichols, R.J.' 10 0000-0002-8476-0554 1 'LaFrance, B.J.' 11 0000-0003-0229-5255 1 'Phillips, N.R.' 12 ? 1 'Oltrogge, L.M.' 13 0000-0001-5716-9980 1 'Valentin-Alvarado, L.E.' 14 0000-0001-7988-8556 1 'Bischoff, A.J.' 15 ? 1 'Nogales, E.' 16 0000-0001-9816-3681 1 'Savage, D.F.' 17 0000-0003-0042-2257 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein SrpI' _entity.formula_weight 35371.121 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SrpI encapsulin shell protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTDNAPQLALRDVAARQLANATKTVPQLRTITPRWLVRLLHWTPVEAGIYRVNQVKDASQITVACSERDESELPETFVDY IDNPREYLLSAVNTVVDVHTRISDLYSNPHDQIREQLRLTIEIMKERQESELINSREYGLLNNVAPGQLVHTRNGAPTPD DLDELLIRVWKEPAFFLAHPQAIAAFGRECTRRGVPPATVSLFGSSFITWRGVPLIPSDKVPLENGKTKILLLRVGESRQ GVVGLYQPNLPGEQGMGLSVRFMGINRKALASYLVSLYCSLAVLTDDALAVLDNVDVTQYHTYRYNSGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTDNAPQLALRDVAARQLANATKTVPQLRTITPRWLVRLLHWTPVEAGIYRVNQVKDASQITVACSERDESELPETFVDY IDNPREYLLSAVNTVVDVHTRISDLYSNPHDQIREQLRLTIEIMKERQESELINSREYGLLNNVAPGQLVHTRNGAPTPD DLDELLIRVWKEPAFFLAHPQAIAAFGRECTRRGVPPATVSLFGSSFITWRGVPLIPSDKVPLENGKTKILLLRVGESRQ GVVGLYQPNLPGEQGMGLSVRFMGINRKALASYLVSLYCSLAVLTDDALAVLDNVDVTQYHTYRYNSGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ASP n 1 4 ASN n 1 5 ALA n 1 6 PRO n 1 7 GLN n 1 8 LEU n 1 9 ALA n 1 10 LEU n 1 11 ARG n 1 12 ASP n 1 13 VAL n 1 14 ALA n 1 15 ALA n 1 16 ARG n 1 17 GLN n 1 18 LEU n 1 19 ALA n 1 20 ASN n 1 21 ALA n 1 22 THR n 1 23 LYS n 1 24 THR n 1 25 VAL n 1 26 PRO n 1 27 GLN n 1 28 LEU n 1 29 ARG n 1 30 THR n 1 31 ILE n 1 32 THR n 1 33 PRO n 1 34 ARG n 1 35 TRP n 1 36 LEU n 1 37 VAL n 1 38 ARG n 1 39 LEU n 1 40 LEU n 1 41 HIS n 1 42 TRP n 1 43 THR n 1 44 PRO n 1 45 VAL n 1 46 GLU n 1 47 ALA n 1 48 GLY n 1 49 ILE n 1 50 TYR n 1 51 ARG n 1 52 VAL n 1 53 ASN n 1 54 GLN n 1 55 VAL n 1 56 LYS n 1 57 ASP n 1 58 ALA n 1 59 SER n 1 60 GLN n 1 61 ILE n 1 62 THR n 1 63 VAL n 1 64 ALA n 1 65 CYS n 1 66 SER n 1 67 GLU n 1 68 ARG n 1 69 ASP n 1 70 GLU n 1 71 SER n 1 72 GLU n 1 73 LEU n 1 74 PRO n 1 75 GLU n 1 76 THR n 1 77 PHE n 1 78 VAL n 1 79 ASP n 1 80 TYR n 1 81 ILE n 1 82 ASP n 1 83 ASN n 1 84 PRO n 1 85 ARG n 1 86 GLU n 1 87 TYR n 1 88 LEU n 1 89 LEU n 1 90 SER n 1 91 ALA n 1 92 VAL n 1 93 ASN n 1 94 THR n 1 95 VAL n 1 96 VAL n 1 97 ASP n 1 98 VAL n 1 99 HIS n 1 100 THR n 1 101 ARG n 1 102 ILE n 1 103 SER n 1 104 ASP n 1 105 LEU n 1 106 TYR n 1 107 SER n 1 108 ASN n 1 109 PRO n 1 110 HIS n 1 111 ASP n 1 112 GLN n 1 113 ILE n 1 114 ARG n 1 115 GLU n 1 116 GLN n 1 117 LEU n 1 118 ARG n 1 119 LEU n 1 120 THR n 1 121 ILE n 1 122 GLU n 1 123 ILE n 1 124 MET n 1 125 LYS n 1 126 GLU n 1 127 ARG n 1 128 GLN n 1 129 GLU n 1 130 SER n 1 131 GLU n 1 132 LEU n 1 133 ILE n 1 134 ASN n 1 135 SER n 1 136 ARG n 1 137 GLU n 1 138 TYR n 1 139 GLY n 1 140 LEU n 1 141 LEU n 1 142 ASN n 1 143 ASN n 1 144 VAL n 1 145 ALA n 1 146 PRO n 1 147 GLY n 1 148 GLN n 1 149 LEU n 1 150 VAL n 1 151 HIS n 1 152 THR n 1 153 ARG n 1 154 ASN n 1 155 GLY n 1 156 ALA n 1 157 PRO n 1 158 THR n 1 159 PRO n 1 160 ASP n 1 161 ASP n 1 162 LEU n 1 163 ASP n 1 164 GLU n 1 165 LEU n 1 166 LEU n 1 167 ILE n 1 168 ARG n 1 169 VAL n 1 170 TRP n 1 171 LYS n 1 172 GLU n 1 173 PRO n 1 174 ALA n 1 175 PHE n 1 176 PHE n 1 177 LEU n 1 178 ALA n 1 179 HIS n 1 180 PRO n 1 181 GLN n 1 182 ALA n 1 183 ILE n 1 184 ALA n 1 185 ALA n 1 186 PHE n 1 187 GLY n 1 188 ARG n 1 189 GLU n 1 190 CYS n 1 191 THR n 1 192 ARG n 1 193 ARG n 1 194 GLY n 1 195 VAL n 1 196 PRO n 1 197 PRO n 1 198 ALA n 1 199 THR n 1 200 VAL n 1 201 SER n 1 202 LEU n 1 203 PHE n 1 204 GLY n 1 205 SER n 1 206 SER n 1 207 PHE n 1 208 ILE n 1 209 THR n 1 210 TRP n 1 211 ARG n 1 212 GLY n 1 213 VAL n 1 214 PRO n 1 215 LEU n 1 216 ILE n 1 217 PRO n 1 218 SER n 1 219 ASP n 1 220 LYS n 1 221 VAL n 1 222 PRO n 1 223 LEU n 1 224 GLU n 1 225 ASN n 1 226 GLY n 1 227 LYS n 1 228 THR n 1 229 LYS n 1 230 ILE n 1 231 LEU n 1 232 LEU n 1 233 LEU n 1 234 ARG n 1 235 VAL n 1 236 GLY n 1 237 GLU n 1 238 SER n 1 239 ARG n 1 240 GLN n 1 241 GLY n 1 242 VAL n 1 243 VAL n 1 244 GLY n 1 245 LEU n 1 246 TYR n 1 247 GLN n 1 248 PRO n 1 249 ASN n 1 250 LEU n 1 251 PRO n 1 252 GLY n 1 253 GLU n 1 254 GLN n 1 255 GLY n 1 256 MET n 1 257 GLY n 1 258 LEU n 1 259 SER n 1 260 VAL n 1 261 ARG n 1 262 PHE n 1 263 MET n 1 264 GLY n 1 265 ILE n 1 266 ASN n 1 267 ARG n 1 268 LYS n 1 269 ALA n 1 270 LEU n 1 271 ALA n 1 272 SER n 1 273 TYR n 1 274 LEU n 1 275 VAL n 1 276 SER n 1 277 LEU n 1 278 TYR n 1 279 CYS n 1 280 SER n 1 281 LEU n 1 282 ALA n 1 283 VAL n 1 284 LEU n 1 285 THR n 1 286 ASP n 1 287 ASP n 1 288 ALA n 1 289 LEU n 1 290 ALA n 1 291 VAL n 1 292 LEU n 1 293 ASP n 1 294 ASN n 1 295 VAL n 1 296 ASP n 1 297 VAL n 1 298 THR n 1 299 GLN n 1 300 TYR n 1 301 HIS n 1 302 THR n 1 303 TYR n 1 304 ARG n 1 305 TYR n 1 306 ASN n 1 307 SER n 1 308 GLY n 1 309 HIS n 1 310 HIS n 1 311 HIS n 1 312 HIS n 1 313 HIS n 1 314 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 314 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'srpI, Synpcc7942_B2662, pANL38' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'PCC 7942 / FACHB-805' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Synechococcus elongatus (strain PCC 7942 / FACHB-805)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1140 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant LOBSTR _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ASP 3 3 ? ? ? A . n A 1 4 ASN 4 4 ? ? ? A . n A 1 5 ALA 5 5 ? ? ? A . n A 1 6 PRO 6 6 ? ? ? A . n A 1 7 GLN 7 7 ? ? ? A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 SER 59 59 ? ? ? A . n A 1 60 GLN 60 60 ? ? ? A . n A 1 61 ILE 61 61 ? ? ? A . n A 1 62 THR 62 62 ? ? ? A . n A 1 63 VAL 63 63 ? ? ? A . n A 1 64 ALA 64 64 ? ? ? A . n A 1 65 CYS 65 65 ? ? ? A . n A 1 66 SER 66 66 ? ? ? A . n A 1 67 GLU 67 67 ? ? ? A . n A 1 68 ARG 68 68 ? ? ? A . n A 1 69 ASP 69 69 ? ? ? A . n A 1 70 GLU 70 70 ? ? ? A . n A 1 71 SER 71 71 ? ? ? A . n A 1 72 GLU 72 72 ? ? ? A . n A 1 73 LEU 73 73 ? ? ? A . n A 1 74 PRO 74 74 ? ? ? A . n A 1 75 GLU 75 75 ? ? ? A . n A 1 76 THR 76 76 ? ? ? A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 HIS 99 99 99 HIS HIS A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 HIS 110 110 110 HIS HIS A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 MET 124 124 124 MET MET A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 ASN 143 143 143 ASN ASN A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 GLN 148 148 148 GLN GLN A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 HIS 151 151 151 HIS HIS A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 TRP 170 170 170 TRP TRP A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 PRO 173 173 173 PRO PRO A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 HIS 179 179 179 HIS HIS A . n A 1 180 PRO 180 180 180 PRO PRO A . n A 1 181 GLN 181 181 181 GLN GLN A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 PHE 186 186 186 PHE PHE A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 CYS 190 190 190 CYS CYS A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 VAL 195 195 195 VAL VAL A . n A 1 196 PRO 196 196 196 PRO PRO A . n A 1 197 PRO 197 197 197 PRO PRO A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 SER 206 206 206 SER SER A . n A 1 207 PHE 207 207 207 PHE PHE A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 THR 209 209 209 THR THR A . n A 1 210 TRP 210 210 210 TRP TRP A . n A 1 211 ARG 211 211 211 ARG ARG A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 VAL 213 213 213 VAL VAL A . n A 1 214 PRO 214 214 214 PRO PRO A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 ILE 216 216 216 ILE ILE A . n A 1 217 PRO 217 217 217 PRO PRO A . n A 1 218 SER 218 218 218 SER SER A . n A 1 219 ASP 219 219 219 ASP ASP A . n A 1 220 LYS 220 220 220 LYS LYS A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 PRO 222 222 222 PRO PRO A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 ASN 225 225 225 ASN ASN A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 LYS 229 229 229 LYS LYS A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 LEU 231 231 231 LEU LEU A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 ARG 234 234 234 ARG ARG A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 GLY 236 236 236 GLY GLY A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 SER 238 238 238 SER SER A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 GLN 240 240 240 GLN GLN A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 GLY 244 244 244 GLY GLY A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 TYR 246 246 246 TYR TYR A . n A 1 247 GLN 247 247 247 GLN GLN A . n A 1 248 PRO 248 248 248 PRO PRO A . n A 1 249 ASN 249 249 249 ASN ASN A . n A 1 250 LEU 250 250 250 LEU LEU A . n A 1 251 PRO 251 251 251 PRO PRO A . n A 1 252 GLY 252 252 252 GLY GLY A . n A 1 253 GLU 253 253 253 GLU GLU A . n A 1 254 GLN 254 254 254 GLN GLN A . n A 1 255 GLY 255 255 255 GLY GLY A . n A 1 256 MET 256 256 256 MET MET A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 SER 259 259 259 SER SER A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 ARG 261 261 261 ARG ARG A . n A 1 262 PHE 262 262 262 PHE PHE A . n A 1 263 MET 263 263 263 MET MET A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 ASN 266 266 266 ASN ASN A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 LYS 268 268 268 LYS LYS A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 LEU 270 270 270 LEU LEU A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 SER 272 272 272 SER SER A . n A 1 273 TYR 273 273 273 TYR TYR A . n A 1 274 LEU 274 274 274 LEU LEU A . n A 1 275 VAL 275 275 275 VAL VAL A . n A 1 276 SER 276 276 276 SER SER A . n A 1 277 LEU 277 277 277 LEU LEU A . n A 1 278 TYR 278 278 278 TYR TYR A . n A 1 279 CYS 279 279 279 CYS CYS A . n A 1 280 SER 280 280 280 SER SER A . n A 1 281 LEU 281 281 281 LEU LEU A . n A 1 282 ALA 282 282 282 ALA ALA A . n A 1 283 VAL 283 283 283 VAL VAL A . n A 1 284 LEU 284 284 284 LEU LEU A . n A 1 285 THR 285 285 285 THR THR A . n A 1 286 ASP 286 286 286 ASP ASP A . n A 1 287 ASP 287 287 287 ASP ASP A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 LEU 289 289 289 LEU LEU A . n A 1 290 ALA 290 290 290 ALA ALA A . n A 1 291 VAL 291 291 291 VAL VAL A . n A 1 292 LEU 292 292 292 LEU LEU A . n A 1 293 ASP 293 293 293 ASP ASP A . n A 1 294 ASN 294 294 294 ASN ASN A . n A 1 295 VAL 295 295 295 VAL VAL A . n A 1 296 ASP 296 296 296 ASP ASP A . n A 1 297 VAL 297 297 297 VAL VAL A . n A 1 298 THR 298 298 298 THR THR A . n A 1 299 GLN 299 299 299 GLN GLN A . n A 1 300 TYR 300 300 300 TYR TYR A . n A 1 301 HIS 301 301 301 HIS HIS A . n A 1 302 THR 302 302 302 THR THR A . n A 1 303 TYR 303 303 303 TYR TYR A . n A 1 304 ARG 304 304 304 ARG ARG A . n A 1 305 TYR 305 305 305 TYR TYR A . n A 1 306 ASN 306 306 ? ? ? A . n A 1 307 SER 307 307 ? ? ? A . n A 1 308 GLY 308 308 ? ? ? A . n A 1 309 HIS 309 309 ? ? ? A . n A 1 310 HIS 310 310 ? ? ? A . n A 1 311 HIS 311 311 ? ? ? A . n A 1 312 HIS 312 312 ? ? ? A . n A 1 313 HIS 313 313 ? ? ? A . n A 1 314 HIS 314 314 ? ? ? A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6X8M _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6X8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6X8M _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6X8M _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.2 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 6X8M _struct.title 'CryoEM structure of the holo-SrpI encapsulin complex from Synechococcus elongatus PCC 7942' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6X8M _struct_keywords.text 'encapsulin, nanocompartment, cysteine desulfurase, HK97-fold, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SRPI_SYNE7 _struct_ref.pdbx_db_accession Q55032 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTDNAPQLALRDVAARQLANATKTVPQLRTITPRWLVRLLHWTPVEAGIYRVNQVKDASQITVACSERDESELPETFVDY IDNPREYLLSAVNTVVDVHTRISDLYSNPHDQIREQLRLTIEIMKERQESELINSREYGLLNNVAPGQLVHTRNGAPTPD DLDELLIRVWKEPAFFLAHPQAIAAFGRECTRRGVPPATVSLFGSSFITWRGVPLIPSDKVPLENGKTKILLLRVGESRQ GVVGLYQPNLPGEQGMGLSVRFMGINRKALASYLVSLYCSLAVLTDDALAVLDNVDVTQYHTYRYN ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6X8M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 306 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q55032 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 306 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 306 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6X8M SER A 307 ? UNP Q55032 ? ? 'expression tag' 307 1 1 6X8M GLY A 308 ? UNP Q55032 ? ? 'expression tag' 308 2 1 6X8M HIS A 309 ? UNP Q55032 ? ? 'expression tag' 309 3 1 6X8M HIS A 310 ? UNP Q55032 ? ? 'expression tag' 310 4 1 6X8M HIS A 311 ? UNP Q55032 ? ? 'expression tag' 311 5 1 6X8M HIS A 312 ? UNP Q55032 ? ? 'expression tag' 312 6 1 6X8M HIS A 313 ? UNP Q55032 ? ? 'expression tag' 313 7 1 6X8M HIS A 314 ? UNP Q55032 ? ? 'expression tag' 314 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A 2 1 A 3 '(1-5)' A 4 '(1,2,6,10,23,24)' A 5 P A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details 'Icosahedral assembly based on reconstruction and historical knowledge of these protein complexes.' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.30901699 0.80901699 0.50000000 -220.80000 -0.80901699 -0.50000000 0.30901699 220.80000 0.50000000 -0.30901699 0.80901699 -220.80000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901699 -0.80901700 -0.50000000 441.60000 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901700 0.00000 3 'point symmetry operation' ? ? -0.80901700 -0.50000000 -0.30901700 578.06191 0.50000000 -0.30901699 -0.80901700 357.26190 0.30901700 -0.80901699 0.50000000 220.80000 4 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901700 220.80000 -0.50000000 -0.30901700 -0.80901700 578.06191 -0.30901699 -0.80901700 0.50000000 357.26190 5 'point symmetry operation' ? ? 0.30901700 0.80901699 0.50000000 -136.46191 -0.80901699 0.50000000 -0.30901700 357.26191 -0.50000000 -0.30901700 0.80901699 220.80000 6 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 220.80000 -0.30901700 -0.80901699 -0.50000001 578.06191 0.80901700 -0.49999999 0.30901699 84.33809 7 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 441.60000 0.00000000 -1.00000000 0.00000000 441.60000 8 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 -0.80901700 -0.50000000 0.30901699 441.60000 9 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 220.80000 0.80901700 0.50000000 0.30901699 -136.46191 -0.50000000 0.30901700 0.80901699 84.33810 10 'point symmetry operation' ? ? -0.30901700 -0.80901699 0.50000000 357.26191 0.80901699 -0.50000000 -0.30901700 220.80000 0.50000000 0.30901700 0.80901699 -136.46191 11 'point symmetry operation' ? ? 0.30901699 0.80901700 -0.49999999 84.33809 0.80901699 -0.50000000 -0.30901699 220.80000 -0.50000001 -0.30901700 -0.80901699 578.06191 12 'point symmetry operation' ? ? 0.50000000 0.30901700 -0.80901699 220.80000 -0.30901700 -0.80901700 -0.50000000 578.06191 -0.80901700 0.50000000 -0.30901699 357.26190 13 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 441.60000 -1.00000000 0.00000000 0.00000000 441.60000 0.00000000 1.00000000 0.00000000 0.00000 14 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901700 441.60000 -0.30901699 0.80901699 0.50000000 0.00000 0.80901700 0.50000000 -0.30901699 0.00000 15 'point symmetry operation' ? ? -0.30901700 0.80901699 -0.50000000 220.80000 0.80901699 0.50000000 0.30901700 -136.46191 0.50000000 -0.30901700 -0.80901699 357.26191 16 'point symmetry operation' ? ? -0.80901699 -0.50000001 -0.30901700 578.06191 -0.49999999 0.30901699 0.80901700 84.33809 -0.30901699 0.80901699 -0.50000000 220.80000 17 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 220.80000 0.50000000 0.30901699 0.80901700 -136.46191 0.30901700 0.80901699 -0.50000000 84.33810 18 'point symmetry operation' ? ? 0.30901699 0.80901700 0.50000000 -136.46191 0.80901699 -0.50000000 0.30901700 84.33810 0.50000000 0.30901699 -0.80901699 220.80000 19 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 441.60000 0.00000000 0.00000000 -1.00000000 441.60000 20 'point symmetry operation' ? ? 0.30901700 -0.80901699 -0.50000000 441.60000 -0.80901699 -0.50000000 0.30901700 441.60000 -0.50000000 0.30901700 -0.80901699 441.60000 21 'point symmetry operation' ? ? -0.30901700 -0.80901699 -0.50000001 578.06191 0.80901700 -0.49999999 0.30901699 84.33809 -0.50000000 -0.30901699 0.80901699 220.80000 22 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 441.60000 0.00000000 -1.00000000 0.00000000 441.60000 0.00000000 0.00000000 1.00000000 0.00000 23 'point symmetry operation' ? ? -0.30901699 0.80901700 0.50000000 0.00000 -0.80901700 -0.50000000 0.30901699 441.60000 0.50000000 -0.30901699 0.80901699 0.00000 24 'point symmetry operation' ? ? 0.80901700 0.50000000 0.30901699 -136.46191 -0.50000000 0.30901700 0.80901699 84.33810 0.30901699 -0.80901699 0.50000000 220.80000 25 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901700 220.80000 0.50000000 0.30901700 0.80901699 -136.46191 -0.30901700 -0.80901699 0.50000000 357.26191 26 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 27 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901700 0.00000 0.30901699 -0.80901700 -0.50000000 441.60000 28 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901700 357.26190 0.30901700 -0.80901699 0.50000000 220.80000 -0.80901700 -0.50000000 -0.30901700 578.06191 29 'point symmetry operation' ? ? -0.50000000 -0.30901700 -0.80901700 578.06191 -0.30901699 -0.80901700 0.50000000 357.26190 -0.80901699 0.50000000 0.30901700 220.80000 30 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901700 357.26191 -0.50000000 -0.30901700 0.80901699 220.80000 0.30901700 0.80901699 0.50000000 -136.46191 31 'point symmetry operation' ? ? -0.49999999 0.30901699 0.80901700 84.33809 -0.30901699 0.80901699 -0.50000000 220.80000 -0.80901699 -0.50000001 -0.30901700 578.06191 32 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901700 -136.46191 0.30901700 0.80901699 -0.50000000 84.33810 -0.80901699 0.50000000 0.30901699 220.80000 33 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901700 84.33810 0.50000000 0.30901699 -0.80901699 220.80000 0.30901699 0.80901700 0.50000000 -136.46191 34 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 441.60000 0.00000000 0.00000000 -1.00000000 441.60000 1.00000000 0.00000000 0.00000000 0.00000 35 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901700 441.60000 -0.50000000 0.30901700 -0.80901699 441.60000 0.30901700 -0.80901699 -0.50000000 441.60000 36 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 220.80000 -0.50000001 -0.30901700 -0.80901699 578.06191 0.30901699 0.80901700 -0.49999999 84.33809 37 'point symmetry operation' ? ? -0.30901700 -0.80901700 -0.50000000 578.06191 -0.80901700 0.50000000 -0.30901699 357.26190 0.50000000 0.30901700 -0.80901699 220.80000 38 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 441.60000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 441.60000 39 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 0.80901700 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901700 441.60000 40 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901700 -136.46191 0.50000000 -0.30901700 -0.80901699 357.26191 -0.30901700 0.80901699 -0.50000000 220.80000 41 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 220.80000 -0.80901699 -0.50000001 -0.30901700 578.06191 -0.49999999 0.30901699 0.80901700 84.33809 42 'point symmetry operation' ? ? 0.30901700 0.80901699 -0.50000000 84.33810 -0.80901699 0.50000000 0.30901699 220.80000 0.50000000 0.30901699 0.80901700 -136.46191 43 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 220.80000 0.30901699 0.80901700 0.50000000 -136.46191 0.80901699 -0.50000000 0.30901700 84.33810 44 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 441.60000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 441.60000 45 'point symmetry operation' ? ? -0.50000000 0.30901700 -0.80901699 441.60000 0.30901700 -0.80901699 -0.50000000 441.60000 -0.80901699 -0.50000000 0.30901700 441.60000 46 'point symmetry operation' ? ? -0.50000001 -0.30901700 -0.80901699 578.06191 0.30901699 0.80901700 -0.49999999 84.33809 0.80901699 -0.50000000 -0.30901699 220.80000 47 'point symmetry operation' ? ? -0.80901700 0.50000000 -0.30901699 357.26190 0.50000000 0.30901700 -0.80901699 220.80000 -0.30901700 -0.80901700 -0.50000000 578.06191 48 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 441.60000 -1.00000000 0.00000000 0.00000000 441.60000 49 'point symmetry operation' ? ? 0.80901700 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901700 441.60000 -0.30901699 0.80901699 0.50000000 0.00000 50 'point symmetry operation' ? ? 0.50000000 -0.30901700 -0.80901699 357.26191 -0.30901700 0.80901699 -0.50000000 220.80000 0.80901699 0.50000000 0.30901700 -136.46191 51 'point symmetry operation' ? ? 0.80901700 -0.49999999 0.30901699 84.33809 -0.50000000 -0.30901699 0.80901699 220.80000 -0.30901700 -0.80901699 -0.50000001 578.06191 52 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 441.60000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 441.60000 53 'point symmetry operation' ? ? -0.80901700 -0.50000000 0.30901699 441.60000 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 54 'point symmetry operation' ? ? -0.50000000 0.30901700 0.80901699 84.33810 0.30901699 -0.80901699 0.50000000 220.80000 0.80901700 0.50000000 0.30901699 -136.46191 55 'point symmetry operation' ? ? 0.50000000 0.30901700 0.80901699 -136.46191 -0.30901700 -0.80901699 0.50000000 357.26191 0.80901699 -0.50000000 -0.30901700 220.80000 56 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 57 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901700 0.00000 0.30901699 -0.80901700 -0.50000000 441.60000 0.80901699 0.50000000 -0.30901699 0.00000 58 'point symmetry operation' ? ? 0.30901700 -0.80901699 0.50000000 220.80000 -0.80901700 -0.50000000 -0.30901700 578.06191 0.50000000 -0.30901699 -0.80901700 357.26190 59 'point symmetry operation' ? ? -0.30901699 -0.80901700 0.50000000 357.26190 -0.80901699 0.50000000 0.30901700 220.80000 -0.50000000 -0.30901700 -0.80901700 578.06191 60 'point symmetry operation' ? ? -0.50000000 -0.30901700 0.80901699 220.80000 0.30901700 0.80901699 0.50000000 -136.46191 -0.80901699 0.50000000 -0.30901700 357.26191 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 11 ? ARG A 16 ? ARG A 11 ARG A 16 1 ? 6 HELX_P HELX_P2 AA2 GLN A 17 ? ALA A 19 ? GLN A 17 ALA A 19 5 ? 3 HELX_P HELX_P3 AA3 ARG A 34 ? LEU A 40 ? ARG A 34 LEU A 40 1 ? 7 HELX_P HELX_P4 AA4 THR A 100 ? TYR A 106 ? THR A 100 TYR A 106 1 ? 7 HELX_P HELX_P5 AA5 ASP A 111 ? SER A 135 ? ASP A 111 SER A 135 1 ? 25 HELX_P HELX_P6 AA6 THR A 158 ? VAL A 169 ? THR A 158 VAL A 169 1 ? 12 HELX_P HELX_P7 AA7 HIS A 179 ? ARG A 193 ? HIS A 179 ARG A 193 1 ? 15 HELX_P HELX_P8 AA8 THR A 285 ? ASP A 287 ? THR A 285 ASP A 287 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 108 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 108 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 109 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 109 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.76 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS A 41 ? PRO A 44 ? HIS A 41 PRO A 44 AA1 2 VAL A 242 ? TYR A 246 ? VAL A 242 TYR A 246 AA1 3 LEU A 270 ? VAL A 283 ? LEU A 270 VAL A 283 AA1 4 SER A 90 ? HIS A 99 ? SER A 90 HIS A 99 AA2 1 HIS A 41 ? PRO A 44 ? HIS A 41 PRO A 44 AA2 2 VAL A 242 ? TYR A 246 ? VAL A 242 TYR A 246 AA2 3 LEU A 270 ? VAL A 283 ? LEU A 270 VAL A 283 AA2 4 LEU A 258 ? ILE A 265 ? LEU A 258 ILE A 265 AA2 5 GLU A 253 ? GLY A 255 ? GLU A 253 GLY A 255 AA3 1 ILE A 49 ? VAL A 52 ? ILE A 49 VAL A 52 AA3 2 ARG A 85 ? LEU A 88 ? ARG A 85 LEU A 88 AA4 1 LEU A 149 ? HIS A 151 ? LEU A 149 HIS A 151 AA4 2 LEU A 289 ? ASP A 296 ? LEU A 289 ASP A 296 AA4 3 LYS A 227 ? LEU A 233 ? LYS A 227 LEU A 233 AA4 4 PHE A 175 ? ALA A 178 ? PHE A 175 ALA A 178 AA4 5 VAL A 213 ? PRO A 217 ? VAL A 213 PRO A 217 AA4 6 SER A 205 ? TRP A 210 ? SER A 205 TRP A 210 AA4 7 THR A 199 ? LEU A 202 ? THR A 199 LEU A 202 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 43 ? N THR A 43 O GLY A 244 ? O GLY A 244 AA1 2 3 N LEU A 245 ? N LEU A 245 O SER A 280 ? O SER A 280 AA1 3 4 O TYR A 273 ? O TYR A 273 N VAL A 96 ? N VAL A 96 AA2 1 2 N THR A 43 ? N THR A 43 O GLY A 244 ? O GLY A 244 AA2 2 3 N LEU A 245 ? N LEU A 245 O SER A 280 ? O SER A 280 AA2 3 4 O LEU A 274 ? O LEU A 274 N ARG A 261 ? N ARG A 261 AA2 4 5 O LEU A 258 ? O LEU A 258 N GLN A 254 ? N GLN A 254 AA3 1 2 N TYR A 50 ? N TYR A 50 O TYR A 87 ? O TYR A 87 AA4 1 2 N VAL A 150 ? N VAL A 150 O ASP A 293 ? O ASP A 293 AA4 2 3 O LEU A 292 ? O LEU A 292 N ILE A 230 ? N ILE A 230 AA4 3 4 O LEU A 231 ? O LEU A 231 N LEU A 177 ? N LEU A 177 AA4 4 5 N PHE A 176 ? N PHE A 176 O PRO A 214 ? O PRO A 214 AA4 5 6 O LEU A 215 ? O LEU A 215 N ILE A 208 ? N ILE A 208 AA4 6 7 O SER A 205 ? O SER A 205 N LEU A 202 ? N LEU A 202 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 143 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -100.15 _pdbx_validate_torsion.psi 55.64 # _pdbx_point_symmetry.entry_id 6X8M _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.entry_id 6X8M _em_3d_fitting.id 1 _em_3d_fitting.details ;One subunit was built completely de novo based on sequence/density, and iteratively real space refined with neighboring subunits using PHENIX. ; _em_3d_fitting.overall_b_value 20 _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria 'Correlation coefficient' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6X8M _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 11980 _em_3d_reconstruction.resolution 2.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 10.0 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'SrpI encapsulin holo complex' RECOMBINANT COMPLEX 1 ? ? 2 1 ? 'SrpI encapsulin' RECOMBINANT COMPLEX 1 ? ? 3 1 ? 'CyD cargo protein' RECOMBINANT COMPLEX ? ? ? # _em_image_scans.entry_id 6X8M _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 33 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6X8M _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details 'Residual beam tilt corrected in RELION/3.1. CTF refinement performed in RELION/3.1.' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.6 _em_imaging.nominal_defocus_max 2800 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification 64000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Open hole grids were treated with 2 drops of chloroform, and were not glow discharged before applying sample.' _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil, UltrAuFoil, R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 278 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'blot force 5, 3 sec blot, 100 humidity, 4C, 1 sec drain time' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6X8M _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6X8M _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6X8M _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ASP 3 ? A ASP 3 4 1 Y 1 A ASN 4 ? A ASN 4 5 1 Y 1 A ALA 5 ? A ALA 5 6 1 Y 1 A PRO 6 ? A PRO 6 7 1 Y 1 A GLN 7 ? A GLN 7 8 1 Y 1 A SER 59 ? A SER 59 9 1 Y 1 A GLN 60 ? A GLN 60 10 1 Y 1 A ILE 61 ? A ILE 61 11 1 Y 1 A THR 62 ? A THR 62 12 1 Y 1 A VAL 63 ? A VAL 63 13 1 Y 1 A ALA 64 ? A ALA 64 14 1 Y 1 A CYS 65 ? A CYS 65 15 1 Y 1 A SER 66 ? A SER 66 16 1 Y 1 A GLU 67 ? A GLU 67 17 1 Y 1 A ARG 68 ? A ARG 68 18 1 Y 1 A ASP 69 ? A ASP 69 19 1 Y 1 A GLU 70 ? A GLU 70 20 1 Y 1 A SER 71 ? A SER 71 21 1 Y 1 A GLU 72 ? A GLU 72 22 1 Y 1 A LEU 73 ? A LEU 73 23 1 Y 1 A PRO 74 ? A PRO 74 24 1 Y 1 A GLU 75 ? A GLU 75 25 1 Y 1 A THR 76 ? A THR 76 26 1 Y 1 A ASN 306 ? A ASN 306 27 1 Y 1 A SER 307 ? A SER 307 28 1 Y 1 A GLY 308 ? A GLY 308 29 1 Y 1 A HIS 309 ? A HIS 309 30 1 Y 1 A HIS 310 ? A HIS 310 31 1 Y 1 A HIS 311 ? A HIS 311 32 1 Y 1 A HIS 312 ? A HIS 312 33 1 Y 1 A HIS 313 ? A HIS 313 34 1 Y 1 A HIS 314 ? A HIS 314 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details 'CTF refinement was performed in Relion/3.1' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 2.1 # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 1 2 ? ? 1140 ? ? 'Synechococcus elongatus (strain PCC 7942 / FACHB-805)' ? ? 2 3 ? ? 1140 ? ? 'Synechococcus elongatus (strain PCC 7942 / FACHB-805)' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 1 2 ? 469008 'Escherichia coli BL21(DE3)' pET14 LOBSTR 2 3 ? 469008 'Escherichia coli BL21(DE3)' pET14 LOBSTR # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'Images collected in super-resolution mode' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 35 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1027 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width 25 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Relion LoG autopicker to select particles' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 15686 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 3.1 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM ? 1 ? 1 3 MASKING ? ? ? 1 ? 1 4 'CTF CORRECTION' ? CTFFIND 4.1.10 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? 1 ? 1 6 'DIFFRACTION INDEXING' ? ? ? 1 ? 1 7 'MODEL FITTING' ? PHENIX dev-2883 1 1 ? 8 OTHER ? ? ? 1 ? 1 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION 3.1 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX dev-2883 1 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.6 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Energy (DOE, United States)' 'United States' 'DE- 638 SC00016240' 1 'National Science Foundation (NSF, United States)' 'United States' 1106400 2 # _atom_sites.entry_id 6X8M _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_