HEADER PROTEIN TRANSPORT 02-JUN-20 6X90 TITLE STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR SEC12 BOUND TO THE TITLE 2 SMALL GTPASE SAR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-EXCHANGE FACTOR SEC12; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC12; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SMALL COPII COAT GTPASE SAR1; COMPND 8 CHAIN: A; COMPND 9 SYNONYM: GTP-BINDING PROTEIN SAR1,SECRETION-ASSOCIATED RAS-RELATED COMPND 10 PROTEIN 1; COMPND 11 EC: 3.6.5.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: SEC12, SED2, YNR026C, N3244; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: SAR1, YPL218W; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENDOPLASMIC RETICULUM, GTPASE, EXCHANGE FACTOR, MEMBRANE TRAFFICKING, KEYWDS 2 PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.M.N.JOINER,J.C.FROMME REVDAT 3 18-OCT-23 6X90 1 REMARK REVDAT 2 06-OCT-21 6X90 1 JRNL REVDAT 1 24-MAR-21 6X90 0 JRNL AUTH A.M.N.JOINER,J.C.FROMME JRNL TITL STRUCTURAL BASIS FOR THE INITIATION OF COPII VESICLE JRNL TITL 2 BIOGENESIS. JRNL REF STRUCTURE V. 29 859 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33831355 JRNL DOI 10.1016/J.STR.2021.03.013 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 76.6 REMARK 3 NUMBER OF REFLECTIONS : 20204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.7100 - 4.3200 1.00 3751 210 0.1650 0.2192 REMARK 3 2 4.3200 - 3.4300 1.00 3602 181 0.1814 0.2505 REMARK 3 3 3.4300 - 2.9900 0.97 3490 160 0.2288 0.3068 REMARK 3 4 2.9900 - 2.7200 0.78 2789 122 0.2697 0.2684 REMARK 3 5 2.7200 - 2.5200 0.63 2229 83 0.2699 0.3602 REMARK 3 6 2.5200 - 2.3800 0.52 1841 88 0.2745 0.3615 REMARK 3 7 2.3800 - 2.2600 0.45 1580 78 0.2941 0.3465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.326 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3814 REMARK 3 ANGLE : 0.784 5155 REMARK 3 CHIRALITY : 0.053 606 REMARK 3 PLANARITY : 0.004 656 REMARK 3 DIHEDRAL : 17.639 1393 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 112.1844 12.9745 31.1094 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.5657 REMARK 3 T33: 0.6547 T12: -0.0331 REMARK 3 T13: -0.0044 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 1.6936 L22: 5.3555 REMARK 3 L33: 3.8645 L12: -0.3535 REMARK 3 L13: 0.2307 L23: -1.2621 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.0307 S13: -0.1363 REMARK 3 S21: -0.1417 S22: 0.2026 S23: 1.4356 REMARK 3 S31: -0.0296 S32: -0.9764 S33: -0.2544 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 123.5446 17.1445 15.1442 REMARK 3 T TENSOR REMARK 3 T11: 0.5842 T22: 0.4240 REMARK 3 T33: 0.3959 T12: 0.0568 REMARK 3 T13: -0.0776 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.6982 L22: 5.9952 REMARK 3 L33: 5.6044 L12: 0.8758 REMARK 3 L13: 0.0996 L23: 0.3222 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: 0.6063 S13: -0.0521 REMARK 3 S21: -1.3764 S22: -0.0276 S23: 0.2906 REMARK 3 S31: 0.2592 S32: -0.3445 S33: -0.0409 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 125.0659 20.7754 51.1882 REMARK 3 T TENSOR REMARK 3 T11: 0.7016 T22: 0.3745 REMARK 3 T33: 0.4596 T12: 0.1302 REMARK 3 T13: 0.1149 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 5.0804 L22: 3.4264 REMARK 3 L33: 5.7455 L12: 2.1521 REMARK 3 L13: -2.6155 L23: -0.2381 REMARK 3 S TENSOR REMARK 3 S11: 0.4156 S12: -0.0556 S13: 1.1412 REMARK 3 S21: 1.3429 S22: 0.4043 S23: 0.6871 REMARK 3 S31: -1.2599 S32: -0.8631 S33: -0.6789 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 128.6323 26.1097 46.9888 REMARK 3 T TENSOR REMARK 3 T11: 0.7767 T22: 0.4638 REMARK 3 T33: 0.6586 T12: -0.0089 REMARK 3 T13: 0.1556 T23: -0.1508 REMARK 3 L TENSOR REMARK 3 L11: 7.6576 L22: 4.8534 REMARK 3 L33: 8.5117 L12: -2.5013 REMARK 3 L13: -0.4150 L23: 0.4564 REMARK 3 S TENSOR REMARK 3 S11: 0.5103 S12: -0.9739 S13: 1.8500 REMARK 3 S21: 1.5090 S22: -0.6451 S23: 0.0044 REMARK 3 S31: -1.3898 S32: -0.6090 S33: 0.0828 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 130.6148 13.6571 41.1365 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.3134 REMARK 3 T33: 0.3209 T12: 0.0532 REMARK 3 T13: 0.0616 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 2.2617 L22: 8.1493 REMARK 3 L33: 6.1256 L12: -0.1397 REMARK 3 L13: 2.9782 L23: -4.7283 REMARK 3 S TENSOR REMARK 3 S11: -0.1335 S12: 0.0536 S13: -0.0904 REMARK 3 S21: 0.3016 S22: 0.0745 S23: -0.0852 REMARK 3 S31: 0.1221 S32: 0.1306 S33: 0.1235 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 133.4354 6.9377 47.7081 REMARK 3 T TENSOR REMARK 3 T11: 0.4595 T22: 0.4189 REMARK 3 T33: 0.5300 T12: 0.0957 REMARK 3 T13: -0.1438 T23: -0.0766 REMARK 3 L TENSOR REMARK 3 L11: 8.4306 L22: 6.6153 REMARK 3 L33: 9.9617 L12: 0.2024 REMARK 3 L13: -5.2151 L23: -2.1923 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: 0.1623 S13: -1.0470 REMARK 3 S21: 0.1614 S22: -0.2364 S23: -0.3214 REMARK 3 S31: 1.1076 S32: 0.5786 S33: -0.1405 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 134.6761 14.4031 59.1637 REMARK 3 T TENSOR REMARK 3 T11: 0.5708 T22: 0.6074 REMARK 3 T33: 0.3570 T12: -0.0423 REMARK 3 T13: -0.0902 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 7.7072 L22: 9.4254 REMARK 3 L33: 4.8357 L12: -2.6330 REMARK 3 L13: -3.1646 L23: 1.8892 REMARK 3 S TENSOR REMARK 3 S11: -0.1630 S12: -1.4307 S13: -0.0915 REMARK 3 S21: 1.2582 S22: 0.3461 S23: -0.4645 REMARK 3 S31: -0.0548 S32: 0.9658 S33: -0.1797 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 140.7527 26.0610 51.2624 REMARK 3 T TENSOR REMARK 3 T11: 1.0395 T22: 0.5532 REMARK 3 T33: 0.4356 T12: -0.0981 REMARK 3 T13: -0.1102 T23: -0.1138 REMARK 3 L TENSOR REMARK 3 L11: 8.8777 L22: 8.9651 REMARK 3 L33: 10.0006 L12: 3.6716 REMARK 3 L13: -2.1554 L23: 0.4361 REMARK 3 S TENSOR REMARK 3 S11: 0.6980 S12: -0.3642 S13: 0.4571 REMARK 3 S21: 0.5434 S22: -0.3249 S23: 0.2228 REMARK 3 S31: -2.2424 S32: 1.0394 S33: -0.5847 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 57.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4H5I, 1F6B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MG/ML PROTEIN, 100MM MES PH6.5, 30% REMARK 280 PEG 5000 MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.16650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.71150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.71150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.16650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR B 345 REMARK 465 THR B 346 REMARK 465 SER B 347 REMARK 465 MET B 348 REMARK 465 LYS B 349 REMARK 465 GLN B 350 REMARK 465 LYS B 351 REMARK 465 ILE B 352 REMARK 465 SER B 353 REMARK 465 LYS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 ARG A 47 REMARK 465 LEU A 48 REMARK 465 ALA A 49 REMARK 465 THR A 50 REMARK 465 LEU A 51 REMARK 465 GLN A 52 REMARK 465 PRO A 53 REMARK 465 THR A 54 REMARK 465 TRP A 55 REMARK 465 HIS A 56 REMARK 465 PRO A 57 REMARK 465 THR A 58 REMARK 465 SER A 59 REMARK 465 GLU A 60 REMARK 465 GLU A 61 REMARK 465 LEU A 62 REMARK 465 ALA A 63 REMARK 465 ILE A 64 REMARK 465 GLY A 65 REMARK 465 ASN A 153 REMARK 465 THR A 154 REMARK 465 THR A 155 REMARK 465 GLY A 156 REMARK 465 SER A 157 REMARK 465 GLN A 158 REMARK 465 ARG A 159 REMARK 465 ILE A 160 REMARK 465 GLU A 161 REMARK 465 GLY A 162 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 21 -159.85 -149.62 REMARK 500 ASP B 23 11.72 -147.18 REMARK 500 ASP B 48 90.78 -167.52 REMARK 500 LEU B 118 -56.53 -126.90 REMARK 500 ASP B 212 39.94 -99.25 REMARK 500 ASN B 288 35.73 73.17 REMARK 500 ASN B 331 9.08 80.85 REMARK 500 TYR A 87 -162.19 -114.59 REMARK 500 ALA A 100 4.09 -68.82 REMARK 500 LYS A 133 35.67 76.56 REMARK 500 ASN A 177 -77.82 -110.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 901 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 32 O REMARK 620 2 GLY B 34 O 97.9 REMARK 620 3 ASN B 36 OD1 116.5 65.7 REMARK 620 4 ILE B 38 O 103.6 141.2 75.9 REMARK 620 5 ASP B 68 O 60.0 91.8 157.0 126.9 REMARK 620 6 HOH B1038 O 155.9 97.7 86.7 74.5 101.3 REMARK 620 N 1 2 3 4 5 DBREF 6X90 B 1 354 UNP P11655 SEC12_YEAST 1 354 DBREF 6X90 A 24 190 UNP P20606 SAR1_YEAST 24 190 SEQADV 6X90 HIS B 355 UNP P11655 EXPRESSION TAG SEQADV 6X90 HIS B 356 UNP P11655 EXPRESSION TAG SEQADV 6X90 HIS B 357 UNP P11655 EXPRESSION TAG SEQADV 6X90 HIS B 358 UNP P11655 EXPRESSION TAG SEQADV 6X90 HIS B 359 UNP P11655 EXPRESSION TAG SEQADV 6X90 HIS B 360 UNP P11655 EXPRESSION TAG SEQADV 6X90 HIS A 191 UNP P20606 EXPRESSION TAG SEQADV 6X90 HIS A 192 UNP P20606 EXPRESSION TAG SEQADV 6X90 HIS A 193 UNP P20606 EXPRESSION TAG SEQADV 6X90 HIS A 194 UNP P20606 EXPRESSION TAG SEQADV 6X90 HIS A 195 UNP P20606 EXPRESSION TAG SEQADV 6X90 HIS A 196 UNP P20606 EXPRESSION TAG SEQRES 1 B 360 MET LYS PHE VAL THR ALA SER TYR ASN VAL GLY TYR PRO SEQRES 2 B 360 ALA TYR GLY ALA LYS PHE LEU ASN ASN ASP THR LEU LEU SEQRES 3 B 360 VAL ALA GLY GLY GLY GLY GLU GLY ASN ASN GLY ILE PRO SEQRES 4 B 360 ASN LYS LEU THR VAL LEU ARG VAL ASP PRO THR LYS ASP SEQRES 5 B 360 THR GLU LYS GLU GLN PHE HIS ILE LEU SER GLU PHE ALA SEQRES 6 B 360 LEU GLU ASP ASN ASP ASP SER PRO THR ALA ILE ASP ALA SEQRES 7 B 360 SER LYS GLY ILE ILE LEU VAL GLY CYS ASN GLU ASN SER SEQRES 8 B 360 THR LYS ILE THR GLN GLY LYS GLY ASN LYS HIS LEU ARG SEQRES 9 B 360 LYS PHE LYS TYR ASP LYS VAL ASN ASP GLN LEU GLU PHE SEQRES 10 B 360 LEU THR SER VAL ASP PHE ASP ALA SER THR ASN ALA ASP SEQRES 11 B 360 ASP TYR THR LYS LEU VAL TYR ILE SER ARG GLU GLY THR SEQRES 12 B 360 VAL ALA ALA ILE ALA SER SER LYS VAL PRO ALA ILE MET SEQRES 13 B 360 ARG ILE ILE ASP PRO SER ASP LEU THR GLU LYS PHE GLU SEQRES 14 B 360 ILE GLU THR ARG GLY GLU VAL LYS ASP LEU HIS PHE SER SEQRES 15 B 360 THR ASP GLY LYS VAL VAL ALA TYR ILE THR GLY SER SER SEQRES 16 B 360 LEU GLU VAL ILE SER THR VAL THR GLY SER CYS ILE ALA SEQRES 17 B 360 ARG LYS THR ASP PHE ASP LYS ASN TRP SER LEU SER LYS SEQRES 18 B 360 ILE ASN PHE ILE ALA ASP ASP THR VAL LEU ILE ALA ALA SEQRES 19 B 360 SER LEU LYS LYS GLY LYS GLY ILE VAL LEU THR LYS ILE SEQRES 20 B 360 SER ILE LYS SER GLY ASN THR SER VAL LEU ARG SER LYS SEQRES 21 B 360 GLN VAL THR ASN ARG PHE LYS GLY ILE THR SER MET ASP SEQRES 22 B 360 VAL ASP MET LYS GLY GLU LEU ALA VAL LEU ALA SER ASN SEQRES 23 B 360 ASP ASN SER ILE ALA LEU VAL LYS LEU LYS ASP LEU SER SEQRES 24 B 360 MET SER LYS ILE PHE LYS GLN ALA HIS SER PHE ALA ILE SEQRES 25 B 360 THR GLU VAL THR ILE SER PRO ASP SER THR TYR VAL ALA SEQRES 26 B 360 SER VAL SER ALA ALA ASN THR ILE HIS ILE ILE LYS LEU SEQRES 27 B 360 PRO LEU ASN TYR ALA ASN TYR THR SER MET LYS GLN LYS SEQRES 28 B 360 ILE SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 A 173 GLY LYS LEU LEU PHE LEU GLY LEU ASP ASN ALA GLY LYS SEQRES 2 A 173 THR THR LEU LEU HIS MET LEU LYS ASN ASP ARG LEU ALA SEQRES 3 A 173 THR LEU GLN PRO THR TRP HIS PRO THR SER GLU GLU LEU SEQRES 4 A 173 ALA ILE GLY ASN ILE LYS PHE THR THR PHE ASP LEU GLY SEQRES 5 A 173 GLY HIS ILE GLN ALA ARG ARG LEU TRP LYS ASP TYR PHE SEQRES 6 A 173 PRO GLU VAL ASN GLY ILE VAL PHE LEU VAL ASP ALA ALA SEQRES 7 A 173 ASP PRO GLU ARG PHE ASP GLU ALA ARG VAL GLU LEU ASP SEQRES 8 A 173 ALA LEU PHE ASN ILE ALA GLU LEU LYS ASP VAL PRO PHE SEQRES 9 A 173 VAL ILE LEU GLY ASN LYS ILE ASP ALA PRO ASN ALA VAL SEQRES 10 A 173 SER GLU ALA GLU LEU ARG SER ALA LEU GLY LEU LEU ASN SEQRES 11 A 173 THR THR GLY SER GLN ARG ILE GLU GLY GLN ARG PRO VAL SEQRES 12 A 173 GLU VAL PHE MET CYS SER VAL VAL MET ARG ASN GLY TYR SEQRES 13 A 173 LEU GLU ALA PHE GLN TRP LEU SER GLN TYR ILE HIS HIS SEQRES 14 A 173 HIS HIS HIS HIS HET K B 901 1 HETNAM K POTASSIUM ION FORMUL 3 K K 1+ FORMUL 4 HOH *72(H2 O) HELIX 1 AA1 THR B 53 GLN B 57 1 5 HELIX 2 AA2 ASN B 90 GLN B 96 1 7 HELIX 3 AA3 GLY A 35 ASP A 46 1 12 HELIX 4 AA4 GLY A 76 TYR A 87 1 12 HELIX 5 AA5 ASP A 102 GLU A 104 5 3 HELIX 6 AA6 ARG A 105 ASN A 118 1 14 HELIX 7 AA7 ILE A 119 LYS A 123 5 5 HELIX 8 AA8 SER A 141 GLY A 150 1 10 HELIX 9 AA9 GLY A 178 HIS A 193 1 16 SHEET 1 AA1 4 VAL B 4 ASN B 9 0 SHEET 2 AA1 4 THR B 332 LYS B 337 -1 O ILE B 333 N TYR B 8 SHEET 3 AA1 4 TYR B 323 SER B 328 -1 N VAL B 324 O ILE B 336 SHEET 4 AA1 4 ILE B 312 ILE B 317 -1 N THR B 316 O ALA B 325 SHEET 1 AA2 4 ALA B 14 PHE B 19 0 SHEET 2 AA2 4 THR B 24 GLY B 30 -1 O LEU B 26 N LYS B 18 SHEET 3 AA2 4 ASN B 40 VAL B 47 -1 O LEU B 45 N LEU B 25 SHEET 4 AA2 4 PHE B 58 ALA B 65 -1 O PHE B 64 N LEU B 42 SHEET 1 AA3 4 ALA B 75 SER B 79 0 SHEET 2 AA3 4 ILE B 82 GLY B 86 -1 O LEU B 84 N ASP B 77 SHEET 3 AA3 4 LEU B 103 TYR B 108 -1 O ARG B 104 N VAL B 85 SHEET 4 AA3 4 LEU B 115 VAL B 121 -1 O THR B 119 N LYS B 105 SHEET 1 AA4 4 THR B 133 ILE B 138 0 SHEET 2 AA4 4 ALA B 145 SER B 149 -1 O ALA B 146 N TYR B 137 SHEET 3 AA4 4 ILE B 155 ASP B 160 -1 O ILE B 159 N ALA B 145 SHEET 4 AA4 4 THR B 165 GLU B 171 -1 O LYS B 167 N ILE B 158 SHEET 1 AA5 4 ASP B 178 PHE B 181 0 SHEET 2 AA5 4 VAL B 187 ILE B 191 -1 O ILE B 191 N ASP B 178 SHEET 3 AA5 4 LEU B 196 SER B 200 -1 O ILE B 199 N VAL B 188 SHEET 4 AA5 4 CYS B 206 LYS B 210 -1 O LYS B 210 N LEU B 196 SHEET 1 AA6 4 TRP B 217 ALA B 226 0 SHEET 2 AA6 4 THR B 229 LEU B 236 -1 O LEU B 231 N ASN B 223 SHEET 3 AA6 4 ILE B 242 ILE B 249 -1 O VAL B 243 N ALA B 234 SHEET 4 AA6 4 THR B 254 THR B 263 -1 O ARG B 258 N LYS B 246 SHEET 1 AA7 4 ILE B 269 VAL B 274 0 SHEET 2 AA7 4 LEU B 280 SER B 285 -1 O ALA B 284 N THR B 270 SHEET 3 AA7 4 ILE B 290 LYS B 294 -1 O ALA B 291 N LEU B 283 SHEET 4 AA7 4 SER B 299 PHE B 304 -1 O LYS B 302 N LEU B 292 SHEET 1 AA8 5 THR A 70 PHE A 72 0 SHEET 2 AA8 5 LYS A 25 GLY A 30 1 N PHE A 28 O PHE A 72 SHEET 3 AA8 5 GLY A 93 ASP A 99 1 O VAL A 95 N LEU A 27 SHEET 4 AA8 5 PHE A 127 ASN A 132 1 O ASN A 132 N VAL A 98 SHEET 5 AA8 5 VAL A 166 MET A 170 1 O GLU A 167 N ILE A 129 LINK O GLY B 32 K K B 901 1555 1555 2.88 LINK O GLY B 34 K K B 901 1555 1555 2.89 LINK OD1 ASN B 36 K K B 901 1555 1555 2.76 LINK O ILE B 38 K K B 901 1555 1555 2.83 LINK O ASP B 68 K K B 901 1555 1555 3.11 LINK K K B 901 O HOH B1038 1555 1555 2.87 CRYST1 50.333 93.620 115.423 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008664 0.00000