HEADER ANTIVIRAL PROTEIN, IMMUNE SYSTEM 03-JUN-20 6X9X TITLE CRYSTAL STRUCTURE OF FAB FRAGMENT OF ANTI-HCV E2 ANTIBODY (HC84.26) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HC84.26 FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HC84.26 FAB LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 EXPI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PCDNA 3.4 TOPO; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 EXPI; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PCDNA 3.4 TOPO KEYWDS ANTI HCV E2, IMMUNE SYSTEM, FAB FRAGMENT, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SHAHID,R.A.MARIUZZA REVDAT 4 18-OCT-23 6X9X 1 REMARK REVDAT 3 23-DEC-20 6X9X 1 JRNL REVDAT 2 09-DEC-20 6X9X 1 REMARK REVDAT 1 02-DEC-20 6X9X 0 JRNL AUTH S.SHAHID,M.GAO,D.TRAVIS GALLAGHER,E.POZHARSKI,R.G.BRINSON, JRNL AUTH 2 Z.Y.KECK,S.K.H.FOUNG,T.R.FUERST,R.A.MARIUZZA JRNL TITL CRYSTAL STRUCTURE OF A BIVALENT ANTIBODY FAB FRAGMENT. JRNL REF J.MOL.BIOL. V. 433 66714 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 33220264 JRNL DOI 10.1016/J.JMB.2020.11.013 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2648 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3291 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2930 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4487 ; 1.472 ; 1.875 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6852 ; 1.072 ; 2.926 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ;18.673 ; 5.632 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;34.461 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;12.097 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4172 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 645 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1701 ; 2.429 ; 2.275 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1699 ; 2.428 ; 2.271 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2123 ; 3.795 ; 3.385 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2124 ; 3.795 ; 3.388 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 3.336 ; 2.591 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1591 ; 3.337 ; 2.594 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2362 ; 5.061 ; 3.716 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3579 ; 7.926 ;28.439 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3484 ; 7.864 ;27.473 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6740 63.3810 37.0960 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.1176 REMARK 3 T33: 0.0307 T12: 0.0018 REMARK 3 T13: -0.0170 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.8934 L22: 2.6214 REMARK 3 L33: 0.4457 L12: -0.9484 REMARK 3 L13: -0.1442 L23: 0.3949 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.0370 S13: -0.0218 REMARK 3 S21: 0.0235 S22: -0.0109 S23: 0.0177 REMARK 3 S31: 0.0187 S32: -0.0847 S33: -0.0156 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3510 34.0350 43.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.0558 T22: 0.1586 REMARK 3 T33: 0.0222 T12: 0.0129 REMARK 3 T13: 0.0022 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.7090 L22: 1.2078 REMARK 3 L33: 3.4657 L12: -0.2910 REMARK 3 L13: -1.5706 L23: -0.1083 REMARK 3 S TENSOR REMARK 3 S11: -0.1618 S12: -0.0343 S13: -0.0531 REMARK 3 S21: 0.0520 S22: 0.0368 S23: 0.0499 REMARK 3 S31: 0.3351 S32: -0.3047 S33: 0.1249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 6X9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ESA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M AMMONIUM ACETATE, 20% PEG 2000 REMARK 280 MME, CRYOPROTECTANT-ETHYLENE GLYCOL, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.34800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.34800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.26750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.84950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.26750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.84950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.34800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.26750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.84950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.34800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.26750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.84950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 113.69900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 122.69600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 539 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 556 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 447 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 VAL A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 GLN A 6 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 THR A 28 REMARK 465 HIS A 29 REMARK 465 ASP A 222 REMARK 465 LYS A 223 REMARK 465 THR A 224 REMARK 465 ALA A 225 REMARK 465 GLY A 226 REMARK 465 TRP A 227 REMARK 465 SER A 228 REMARK 465 HIS A 229 REMARK 465 PRO A 230 REMARK 465 GLN A 231 REMARK 465 PHE A 232 REMARK 465 GLU A 233 REMARK 465 LYS A 234 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 465 O HOH A 546 1.85 REMARK 500 O GLN A 65 O HOH A 401 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 65 -128.46 63.31 REMARK 500 SER A 77 53.57 36.86 REMARK 500 ASP A 149 59.89 72.94 REMARK 500 ASP B 50 -45.50 74.42 REMARK 500 SER B 51 7.20 -155.64 REMARK 500 ALA B 83 173.03 176.09 REMARK 500 SER B 92 -23.25 88.22 REMARK 500 SER B 93 -83.51 -90.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 590 DISTANCE = 6.62 ANGSTROMS DBREF 6X9X A 1 234 PDB 6X9X 6X9X 1 234 DBREF 6X9X B 1 213 PDB 6X9X 6X9X 1 213 SEQRES 1 A 234 GLN VAL GLN PRO VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 A 234 PRO GLY SER SER VAL LYS VAL SER CYS GLU ALA SER GLY SEQRES 3 A 234 GLY THR HIS SER ASN TYR VAL ILE THR TRP VAL ARG GLN SEQRES 4 A 234 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY PHE ILE SEQRES 5 A 234 PRO ASP PHE ARG THR ALA MET TYR ALA GLN GLY PHE GLN SEQRES 6 A 234 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER LEU SEQRES 7 A 234 ALA TYR MET GLU LEU THR ASN LEU ARG SER GLU ASP THR SEQRES 8 A 234 ALA VAL TYR TYR CYS ALA ARG GLY PRO LEU SER ARG GLY SEQRES 9 A 234 TYR TYR ASP TYR TRP GLY PRO GLY THR LEU VAL THR VAL SEQRES 10 A 234 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 A 234 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 A 234 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 A 234 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 A 234 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 A 234 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 A 234 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 A 234 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 18 A 234 ASP LYS THR ALA GLY TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 213 SER TYR VAL LEU THR GLN PRO PRO SER VAL SER VAL ALA SEQRES 2 B 213 PRO GLY GLN THR ALA SER ILE THR CYS SER GLY ASP LYS SEQRES 3 B 213 LEU GLY ASP LYS TYR VAL SER TRP TYR GLN GLN ARG PRO SEQRES 4 B 213 GLY GLN SER PRO VAL LEU VAL LEU TYR GLN ASP SER LYS SEQRES 5 B 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 B 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 B 213 ALA MET ASP GLU ALA ASP TYR TYR CYS GLN ALA TRP ASP SEQRES 8 B 213 SER SER ALA LEU VAL PHE GLY GLY GLY THR LYS LEU THR SEQRES 9 B 213 VAL LEU ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 B 213 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 B 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 B 213 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 B 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 B 213 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 B 213 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 B 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 B 213 ASN ARG GLY GLU CYS HET ACT A 301 4 HET EDO A 302 4 HET EDO B 301 4 HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *333(H2 O) HELIX 1 AA1 GLN A 62 GLN A 65 5 4 HELIX 2 AA2 ARG A 87 THR A 91 5 5 HELIX 3 AA3 SER A 161 ALA A 163 5 3 HELIX 4 AA4 SER A 192 LEU A 194 5 3 HELIX 5 AA5 LYS A 206 ASN A 209 5 4 HELIX 6 AA6 LYS B 26 LYS B 30 5 5 HELIX 7 AA7 GLN B 78 GLU B 82 5 5 HELIX 8 AA8 SER B 120 SER B 126 1 7 HELIX 9 AA9 LYS B 182 LYS B 187 1 6 SHEET 1 AA1 6 GLY A 8 LYS A 12 0 SHEET 2 AA1 6 THR A 113 VAL A 117 1 O LEU A 114 N GLU A 10 SHEET 3 AA1 6 ALA A 92 PRO A 100 -1 N ALA A 92 O VAL A 115 SHEET 4 AA1 6 TYR A 32 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA1 6 GLU A 46 PHE A 51 -1 O MET A 48 N TRP A 36 SHEET 6 AA1 6 ALA A 58 TYR A 60 -1 O MET A 59 N GLY A 50 SHEET 1 AA2 4 GLY A 8 LYS A 12 0 SHEET 2 AA2 4 THR A 113 VAL A 117 1 O LEU A 114 N GLU A 10 SHEET 3 AA2 4 ALA A 92 PRO A 100 -1 N ALA A 92 O VAL A 115 SHEET 4 AA2 4 TYR A 108 TRP A 109 -1 O TYR A 108 N ARG A 98 SHEET 1 AA3 3 VAL A 18 GLU A 23 0 SHEET 2 AA3 3 LEU A 78 LEU A 83 -1 O MET A 81 N VAL A 20 SHEET 3 AA3 3 VAL A 68 ASP A 73 -1 N THR A 69 O GLU A 82 SHEET 1 AA4 4 SER A 125 LEU A 129 0 SHEET 2 AA4 4 THR A 140 TYR A 150 -1 O LYS A 148 N SER A 125 SHEET 3 AA4 4 TYR A 181 PRO A 190 -1 O LEU A 183 N VAL A 147 SHEET 4 AA4 4 VAL A 168 THR A 170 -1 N HIS A 169 O VAL A 186 SHEET 1 AA5 4 SER A 125 LEU A 129 0 SHEET 2 AA5 4 THR A 140 TYR A 150 -1 O LYS A 148 N SER A 125 SHEET 3 AA5 4 TYR A 181 PRO A 190 -1 O LEU A 183 N VAL A 147 SHEET 4 AA5 4 VAL A 174 LEU A 175 -1 N VAL A 174 O SER A 182 SHEET 1 AA6 3 THR A 156 TRP A 159 0 SHEET 2 AA6 3 ILE A 200 HIS A 205 -1 O ASN A 202 N SER A 158 SHEET 3 AA6 3 THR A 210 ARG A 215 -1 O VAL A 212 N VAL A 203 SHEET 1 AA7 5 SER B 9 VAL B 12 0 SHEET 2 AA7 5 THR B 101 VAL B 105 1 O THR B 104 N VAL B 10 SHEET 3 AA7 5 ALA B 83 TRP B 90 -1 N ALA B 83 O LEU B 103 SHEET 4 AA7 5 TYR B 31 GLN B 37 -1 N SER B 33 O GLN B 88 SHEET 5 AA7 5 VAL B 44 LEU B 47 -1 O VAL B 46 N TRP B 34 SHEET 1 AA8 4 SER B 9 VAL B 12 0 SHEET 2 AA8 4 THR B 101 VAL B 105 1 O THR B 104 N VAL B 10 SHEET 3 AA8 4 ALA B 83 TRP B 90 -1 N ALA B 83 O LEU B 103 SHEET 4 AA8 4 LEU B 95 PHE B 97 -1 O VAL B 96 N ALA B 89 SHEET 1 AA9 3 ALA B 18 SER B 23 0 SHEET 2 AA9 3 THR B 69 ILE B 74 -1 O LEU B 72 N ILE B 20 SHEET 3 AA9 3 PHE B 61 SER B 66 -1 N SER B 62 O THR B 73 SHEET 1 AB1 4 SER B 113 PHE B 117 0 SHEET 2 AB1 4 THR B 128 PHE B 138 -1 O LEU B 134 N PHE B 115 SHEET 3 AB1 4 TYR B 172 SER B 181 -1 O TYR B 172 N PHE B 138 SHEET 4 AB1 4 SER B 158 VAL B 162 -1 N GLN B 159 O THR B 177 SHEET 1 AB2 4 ALA B 152 LEU B 153 0 SHEET 2 AB2 4 LYS B 144 VAL B 149 -1 N VAL B 149 O ALA B 152 SHEET 3 AB2 4 VAL B 190 THR B 196 -1 O GLU B 194 N GLN B 146 SHEET 4 AB2 4 VAL B 204 ASN B 209 -1 O VAL B 204 N VAL B 195 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.01 SSBOND 2 CYS A 145 CYS A 201 1555 1555 2.08 SSBOND 3 CYS B 22 CYS B 87 1555 1555 2.04 SSBOND 4 CYS B 133 CYS B 193 1555 1555 2.11 CISPEP 1 PHE A 151 PRO A 152 0 -10.10 CISPEP 2 GLU A 153 PRO A 154 0 -6.27 CISPEP 3 TYR B 139 PRO B 140 0 1.61 CRYST1 82.535 113.699 122.696 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008150 0.00000