HEADER TRANSFERASE 08-JUN-20 6XCG TITLE HISTONE-LYSINE N-METHYLTRANSFERASE NSD2-PWWP1 WITH COMPOUND UNC6934 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE NSD2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 211-350; COMPND 5 SYNONYM: MULTIPLE MYELOMA SET DOMAIN-CONTAINING PROTEIN, MMSET, COMPND 6 NUCLEAR SET DOMAIN-CONTAINING PROTEIN 2, PROTEIN TRITHORAX-5, WOLF- COMPND 7 HIRSCHHORN SYNDROME CANDIDATE 1 PROTEIN; COMPND 8 EC: 2.1.1.356; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NSD2, KIAA1090, MMSET, TRX5, WHSC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS NSD2-PWWP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.Q.ZHOU,A.DONG,L.A.INGERMAN,R.P.HANLEY,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 18-OCT-23 6XCG 1 REMARK REVDAT 2 23-AUG-23 6XCG 1 JRNL REVDAT 1 22-JUL-20 6XCG 0 JRNL AUTH D.DILWORTH,R.P.HANLEY,R.FERREIRA DE FREITAS, JRNL AUTH 2 A.ALLALI-HASSANI,M.ZHOU,N.MEHTA,M.R.MARUNDE,S.ACKLOO, JRNL AUTH 3 R.A.CARVALHO MACHADO,A.KHALILI YAZDI,D.D.G.OWENS,V.VU, JRNL AUTH 4 D.Y.NIE,M.ALQAZZAZ,E.MARCON,F.LI,I.CHAU,A.BOLOTOKOVA,S.QIN, JRNL AUTH 5 M.LEI,Y.LIU,M.M.SZEWCZYK,A.DONG,S.KAZEMZADEH,T.ABRAMYAN, JRNL AUTH 6 I.K.POPOVA,N.W.HALL,M.J.MEINERS,M.A.CHEEK,E.GIBSON,D.KIREEV, JRNL AUTH 7 J.F.GREENBLATT,M.C.KEOGH,J.MIN,P.J.BROWN,M.VEDADI, JRNL AUTH 8 C.H.ARROWSMITH,D.BARSYTE-LOVEJOY,L.I.JAMES,M.SCHAPIRA JRNL TITL A CHEMICAL PROBE TARGETING THE PWWP DOMAIN ALTERS NSD2 JRNL TITL 2 NUCLEOLAR LOCALIZATION. JRNL REF NAT.CHEM.BIOL. V. 18 56 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 34782742 JRNL DOI 10.1038/S41589-021-00898-0 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 47761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1168 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 604 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : -0.53000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3381 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3058 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4580 ; 1.434 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7103 ; 1.387 ; 1.601 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 7.113 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;29.670 ;23.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 563 ;12.990 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4139 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 745 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 255 B 258 2 REMARK 3 1 A 255 A 258 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 B (A): 18 ; 0.060 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 24 ; 8.260 ; 0.500 REMARK 3 MEDIUM THERMAL 1 B (A**2): 18 ; 8.020 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6XCG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49043 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: PDB ENTRY 5VC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.01 M REMARK 280 MAGNESIUM CHLORIDE, 0.1 M HEPES, PH 7.5, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 210 REMARK 465 GLY A 211 REMARK 465 ARG A 212 REMARK 465 ASP A 213 REMARK 465 LYS A 214 REMARK 465 ASP A 215 REMARK 465 HIS A 216 REMARK 465 LEU A 217 REMARK 465 GLY B 210 REMARK 465 GLY B 211 REMARK 465 ARG B 212 REMARK 465 ASP B 213 REMARK 465 LYS B 214 REMARK 465 ASP B 215 REMARK 465 HIS B 216 REMARK 465 LEU B 217 REMARK 465 GLY C 210 REMARK 465 GLY C 211 REMARK 465 ARG C 212 REMARK 465 ASP C 213 REMARK 465 LYS C 214 REMARK 465 ASP C 215 REMARK 465 HIS C 216 REMARK 465 LEU C 217 REMARK 465 LYS C 256 REMARK 465 LYS C 257 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 253 NZ REMARK 470 LYS A 256 CE NZ REMARK 470 LYS A 257 CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS B 219 CE NZ REMARK 470 LYS B 253 CD CE NZ REMARK 470 GLN B 255 OE1 NE2 REMARK 470 LYS B 256 CD CE NZ REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 304 CD CE NZ REMARK 470 LYS B 309 CE NZ REMARK 470 LYS B 312 CD CE NZ REMARK 470 LYS C 279 CG CD CE NZ REMARK 470 LYS C 304 CD CE NZ REMARK 470 LYS C 309 CE NZ REMARK 470 LYS C 312 CD CE NZ REMARK 470 LYS C 317 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 323 O HOH C 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 718 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 719 DISTANCE = 6.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V01 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V01 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V01 C 401 DBREF 6XCG A 211 350 UNP O96028 NSD2_HUMAN 211 350 DBREF 6XCG B 211 350 UNP O96028 NSD2_HUMAN 211 350 DBREF 6XCG C 211 350 UNP O96028 NSD2_HUMAN 211 350 SEQADV 6XCG GLY A 210 UNP O96028 EXPRESSION TAG SEQADV 6XCG GLY B 210 UNP O96028 EXPRESSION TAG SEQADV 6XCG GLY C 210 UNP O96028 EXPRESSION TAG SEQRES 1 A 141 GLY GLY ARG ASP LYS ASP HIS LEU LEU LYS TYR ASN VAL SEQRES 2 A 141 GLY ASP LEU VAL TRP SER LYS VAL SER GLY TYR PRO TRP SEQRES 3 A 141 TRP PRO CYS MET VAL SER ALA ASP PRO LEU LEU HIS SER SEQRES 4 A 141 TYR THR LYS LEU LYS GLY GLN LYS LYS SER ALA ARG GLN SEQRES 5 A 141 TYR HIS VAL GLN PHE PHE GLY ASP ALA PRO GLU ARG ALA SEQRES 6 A 141 TRP ILE PHE GLU LYS SER LEU VAL ALA PHE GLU GLY GLU SEQRES 7 A 141 GLY GLN PHE GLU LYS LEU CYS GLN GLU SER ALA LYS GLN SEQRES 8 A 141 ALA PRO THR LYS ALA GLU LYS ILE LYS LEU LEU LYS PRO SEQRES 9 A 141 ILE SER GLY LYS LEU ARG ALA GLN TRP GLU MET GLY ILE SEQRES 10 A 141 VAL GLN ALA GLU GLU ALA ALA SER MET SER VAL GLU GLU SEQRES 11 A 141 ARG LYS ALA LYS PHE THR PHE LEU TYR VAL GLY SEQRES 1 B 141 GLY GLY ARG ASP LYS ASP HIS LEU LEU LYS TYR ASN VAL SEQRES 2 B 141 GLY ASP LEU VAL TRP SER LYS VAL SER GLY TYR PRO TRP SEQRES 3 B 141 TRP PRO CYS MET VAL SER ALA ASP PRO LEU LEU HIS SER SEQRES 4 B 141 TYR THR LYS LEU LYS GLY GLN LYS LYS SER ALA ARG GLN SEQRES 5 B 141 TYR HIS VAL GLN PHE PHE GLY ASP ALA PRO GLU ARG ALA SEQRES 6 B 141 TRP ILE PHE GLU LYS SER LEU VAL ALA PHE GLU GLY GLU SEQRES 7 B 141 GLY GLN PHE GLU LYS LEU CYS GLN GLU SER ALA LYS GLN SEQRES 8 B 141 ALA PRO THR LYS ALA GLU LYS ILE LYS LEU LEU LYS PRO SEQRES 9 B 141 ILE SER GLY LYS LEU ARG ALA GLN TRP GLU MET GLY ILE SEQRES 10 B 141 VAL GLN ALA GLU GLU ALA ALA SER MET SER VAL GLU GLU SEQRES 11 B 141 ARG LYS ALA LYS PHE THR PHE LEU TYR VAL GLY SEQRES 1 C 141 GLY GLY ARG ASP LYS ASP HIS LEU LEU LYS TYR ASN VAL SEQRES 2 C 141 GLY ASP LEU VAL TRP SER LYS VAL SER GLY TYR PRO TRP SEQRES 3 C 141 TRP PRO CYS MET VAL SER ALA ASP PRO LEU LEU HIS SER SEQRES 4 C 141 TYR THR LYS LEU LYS GLY GLN LYS LYS SER ALA ARG GLN SEQRES 5 C 141 TYR HIS VAL GLN PHE PHE GLY ASP ALA PRO GLU ARG ALA SEQRES 6 C 141 TRP ILE PHE GLU LYS SER LEU VAL ALA PHE GLU GLY GLU SEQRES 7 C 141 GLY GLN PHE GLU LYS LEU CYS GLN GLU SER ALA LYS GLN SEQRES 8 C 141 ALA PRO THR LYS ALA GLU LYS ILE LYS LEU LEU LYS PRO SEQRES 9 C 141 ILE SER GLY LYS LEU ARG ALA GLN TRP GLU MET GLY ILE SEQRES 10 C 141 VAL GLN ALA GLU GLU ALA ALA SER MET SER VAL GLU GLU SEQRES 11 C 141 ARG LYS ALA LYS PHE THR PHE LEU TYR VAL GLY HET V01 A 401 33 HET V01 B 401 33 HET UNX B 402 1 HET UNX B 403 1 HET UNX B 404 1 HET V01 C 401 33 HET UNX C 402 1 HET UNX C 403 1 HET UNX C 404 1 HETNAM V01 N-CYCLOPROPYL-3-OXO-N-({4-[(PYRIMIDIN-4-YL) HETNAM 2 V01 CARBAMOYL]PHENYL}METHYL)-3,4-DIHYDRO-2H-1,4- HETNAM 3 V01 BENZOXAZINE-7-CARBOXAMIDE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 4 V01 3(C24 H21 N5 O4) FORMUL 6 UNX 6(X) FORMUL 13 HOH *604(H2 O) HELIX 1 AA1 GLY A 254 LYS A 256 5 3 HELIX 2 AA2 GLY A 286 GLY A 288 5 3 HELIX 3 AA3 GLN A 289 ALA A 301 1 13 HELIX 4 AA4 THR A 303 LEU A 311 1 9 HELIX 5 AA5 SER A 315 SER A 334 1 20 HELIX 6 AA6 SER A 336 THR A 345 1 10 HELIX 7 AA7 GLY B 254 LYS B 256 5 3 HELIX 8 AA8 GLY B 286 GLY B 288 5 3 HELIX 9 AA9 GLN B 289 ALA B 301 1 13 HELIX 10 AB1 THR B 303 LEU B 311 1 9 HELIX 11 AB2 SER B 315 SER B 334 1 20 HELIX 12 AB3 SER B 336 THR B 345 1 10 HELIX 13 AB4 GLY C 286 GLY C 288 5 3 HELIX 14 AB5 GLN C 289 ALA C 301 1 13 HELIX 15 AB6 THR C 303 LYS C 312 1 10 HELIX 16 AB7 SER C 315 SER C 334 1 20 HELIX 17 AB8 SER C 336 THR C 345 1 10 SHEET 1 AA1 3 THR A 250 LEU A 252 0 SHEET 2 AA1 3 ARG A 260 PHE A 266 -1 O GLN A 261 N LYS A 251 SHEET 3 AA1 3 GLU A 272 PHE A 277 -1 O ILE A 276 N TYR A 262 SHEET 1 AA2 5 THR A 250 LEU A 252 0 SHEET 2 AA2 5 ARG A 260 PHE A 266 -1 O GLN A 261 N LYS A 251 SHEET 3 AA2 5 TRP A 236 VAL A 240 -1 N MET A 239 O GLN A 265 SHEET 4 AA2 5 LEU A 225 SER A 228 -1 N VAL A 226 O CYS A 238 SHEET 5 AA2 5 LEU A 281 ALA A 283 -1 O VAL A 282 N TRP A 227 SHEET 1 AA3 3 THR B 250 LEU B 252 0 SHEET 2 AA3 3 ARG B 260 PHE B 266 -1 O GLN B 261 N LYS B 251 SHEET 3 AA3 3 GLU B 272 PHE B 277 -1 O ILE B 276 N TYR B 262 SHEET 1 AA4 5 THR B 250 LEU B 252 0 SHEET 2 AA4 5 ARG B 260 PHE B 266 -1 O GLN B 261 N LYS B 251 SHEET 3 AA4 5 TRP B 236 VAL B 240 -1 N MET B 239 O GLN B 265 SHEET 4 AA4 5 LEU B 225 SER B 228 -1 N VAL B 226 O CYS B 238 SHEET 5 AA4 5 LEU B 281 ALA B 283 -1 O VAL B 282 N TRP B 227 SHEET 1 AA5 3 THR C 250 LEU C 252 0 SHEET 2 AA5 3 ARG C 260 PHE C 266 -1 O GLN C 261 N LYS C 251 SHEET 3 AA5 3 GLU C 272 PHE C 277 -1 O ILE C 276 N TYR C 262 SHEET 1 AA6 5 THR C 250 LEU C 252 0 SHEET 2 AA6 5 ARG C 260 PHE C 266 -1 O GLN C 261 N LYS C 251 SHEET 3 AA6 5 TRP C 236 VAL C 240 -1 N MET C 239 O GLN C 265 SHEET 4 AA6 5 LEU C 225 SER C 228 -1 N VAL C 226 O CYS C 238 SHEET 5 AA6 5 LEU C 281 ALA C 283 -1 O VAL C 282 N TRP C 227 SITE 1 AC1 15 TYR A 233 TRP A 236 PHE A 266 PHE A 267 SITE 2 AC1 15 GLY A 268 ASP A 269 ALA A 270 GLU A 272 SITE 3 AC1 15 ARG A 273 ALA A 274 LEU A 318 GLN A 321 SITE 4 AC1 15 HOH A 516 HOH A 547 HOH A 589 SITE 1 AC2 14 TYR B 233 TRP B 236 PHE B 266 PHE B 267 SITE 2 AC2 14 GLY B 268 ASP B 269 ALA B 270 GLU B 272 SITE 3 AC2 14 ARG B 273 ALA B 274 LEU B 318 GLN B 321 SITE 4 AC2 14 HOH B 564 HOH B 567 SITE 1 AC3 14 TYR C 233 TRP C 236 PHE C 266 PHE C 267 SITE 2 AC3 14 GLY C 268 ASP C 269 ALA C 270 GLU C 272 SITE 3 AC3 14 ARG C 273 LEU C 318 GLN C 321 HOH C 513 SITE 4 AC3 14 HOH C 562 HOH C 584 CRYST1 49.566 49.978 51.179 91.35 91.88 118.27 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020175 0.010851 0.001146 0.00000 SCALE2 0.000000 0.022719 0.001011 0.00000 SCALE3 0.000000 0.000000 0.019569 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.564257 -0.807468 -0.172076 -0.50403 1 MTRIX2 2 0.814704 -0.578331 0.042316 -0.01777 1 MTRIX3 2 -0.133686 -0.116314 0.984174 -14.19856 1