data_6XCL # _entry.id 6XCL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6XCL pdb_00006xcl 10.2210/pdb6xcl/pdb WWPDB D_1000249897 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6XCL _pdbx_database_status.recvd_initial_deposition_date 2020-06-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Miron, C.E.' 1 0000-0003-4122-437X 'van Staalduinen, L.M.' 2 0000-0001-8037-9847 'Jia, Z.' 3 0000-0002-9322-9394 'Petitjean, A.' 4 0000-0003-2085-1884 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 60 _citation.language ? _citation.page_first 2500 _citation.page_last 2507 _citation.title 'Going Platinum to the Tune of a Remarkable Guanine Quadruplex Binder: Solution- and Solid-State Investigations.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202012520 _citation.pdbx_database_id_PubMed 33090592 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Miron, C.E.' 1 0000-0003-4122-437X primary 'van Staalduinen, L.' 2 ? primary 'Rangaswamy, A.M.' 3 ? primary 'Chen, M.' 4 ? primary 'Liang, Y.' 5 ? primary 'Jia, Z.' 6 ? primary 'Mergny, J.L.' 7 ? primary 'Petitjean, A.' 8 0000-0003-2085-1884 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6XCL _cell.details ? _cell.formula_units_Z ? _cell.length_a 64.030 _cell.length_a_esd ? _cell.length_b 64.030 _cell.length_b_esd ? _cell.length_c 42.230 _cell.length_c_esd ? _cell.volume 149940.418 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall 'P 3' _symmetry.space_group_name_H-M 'P 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') ; 6983.497 2 ? ? ? ? 2 non-polymer syn 'Platinum(II) bis[3-(pyridin-2-yl)-[1,2,4]triazolo[4,3-a]pyridine]' 587.494 3 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 5 ? ? ? ? 5 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can AGGGTTAGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DG n 1 22 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6XCL _struct_ref.pdbx_db_accession 6XCL _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6XCL A 1 ? 22 ? 6XCL 1 ? 22 ? 1 22 2 1 6XCL B 1 ? 22 ? 6XCL 1 ? 22 ? 1 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 V4A non-polymer . 'Platinum(II) bis[3-(pyridin-2-yl)-[1,2,4]triazolo[4,3-a]pyridine]' ? 'C22 H16 N8 Pt 2' 587.494 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6XCL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.58 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM KCl, 10 mM MgCl2, 50 mM MES (pH 6.0), 10% PEG 400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-02-07 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0332 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08B1-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0332 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08B1-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate 55.79 _reflns.entry_id 6XCL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 35 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10637 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.097 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.28 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.9 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.51 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2054 _reflns_shell.percent_possible_all 99.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.pdbx_Rsym_value 0.816 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 41.07 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6XCL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.70 _refine.ls_d_res_low 33.60 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10574 _refine.ls_number_reflns_R_free 530 _refine.ls_number_reflns_R_work 10044 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.23 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1938 _refine.ls_R_factor_R_free 0.2432 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1913 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3t5e _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.9560 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3274 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 33.60 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 1042 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 930 _refine_hist.pdbx_number_atoms_ligand 106 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0095 ? 1156 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1575 ? 1766 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0448 ? 174 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0060 ? 56 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 34.5605 ? 440 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.70 2.97 . . 132 2522 99.62 . . . 0.3343 . 0.3133 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.97 3.40 . . 132 2489 98.16 . . . 0.2989 . 0.2051 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.40 4.28 . . 132 2520 99.77 . . . 0.2245 . 0.2104 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.29 33.60 . . 134 2513 99.36 . . . 0.2117 . 0.1476 . . . . . . . . . . . # _struct.entry_id 6XCL _struct.title 'Crystal Structure of human telomeric DNA G-quadruplex in complex with a novel platinum(II) complex.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6XCL _struct_keywords.text 'guanine quadruplex, Ligand Complex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 3 ? J N N 4 ? K N N 2 ? L N N 4 ? M N N 5 ? N N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 O6 ? ? ? 1_555 F K . K ? ? A DG 2 A K 104 1_555 ? ? ? ? ? ? ? 2.590 ? ? metalc2 metalc ? ? A DG 3 O6 ? ? ? 1_555 F K . K ? ? A DG 3 A K 104 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 G K . K ? ? A DG 3 A K 105 1_555 ? ? ? ? ? ? ? 2.830 ? ? metalc4 metalc ? ? A DG 4 O6 ? ? ? 1_555 G K . K ? ? A DG 4 A K 105 1_555 ? ? ? ? ? ? ? 2.746 ? ? metalc5 metalc ? ? A DT 6 O2 ? ? ? 1_555 H K . K ? ? A DT 6 A K 106 1_554 ? ? ? ? ? ? ? 3.099 ? ? metalc6 metalc ? ? A DG 8 O6 ? ? ? 1_555 F K . K ? ? A DG 8 A K 104 1_555 ? ? ? ? ? ? ? 2.788 ? ? metalc7 metalc ? ? A DG 9 O6 ? ? ? 1_555 F K . K ? ? A DG 9 A K 104 1_555 ? ? ? ? ? ? ? 3.041 ? ? metalc8 metalc ? ? A DG 9 O6 ? ? ? 1_555 G K . K ? ? A DG 9 A K 105 1_555 ? ? ? ? ? ? ? 3.029 ? ? metalc9 metalc ? ? A DG 10 O6 ? ? ? 1_555 G K . K ? ? A DG 10 A K 105 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc10 metalc ? ? A DG 14 O6 ? ? ? 1_555 F K . K ? ? A DG 14 A K 104 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc11 metalc ? ? A DG 15 O6 ? ? ? 1_555 F K . K ? ? A DG 15 A K 104 1_555 ? ? ? ? ? ? ? 3.138 ? ? metalc12 metalc ? ? A DG 15 O6 ? ? ? 1_555 G K . K ? ? A DG 15 A K 105 1_555 ? ? ? ? ? ? ? 2.981 ? ? metalc13 metalc ? ? A DG 16 O6 ? ? ? 1_555 G K . K ? ? A DG 16 A K 105 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc14 metalc ? ? A DT 18 O2 ? ? ? 1_555 H K . K ? ? A DT 18 A K 106 1_555 ? ? ? ? ? ? ? 3.007 ? ? metalc15 metalc ? ? A DG 20 O6 ? ? ? 1_555 F K . K ? ? A DG 20 A K 104 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc16 metalc ? ? A DG 21 O6 ? ? ? 1_555 F K . K ? ? A DG 21 A K 104 1_555 ? ? ? ? ? ? ? 2.777 ? ? metalc17 metalc ? ? A DG 21 O6 ? ? ? 1_555 G K . K ? ? A DG 21 A K 105 1_555 ? ? ? ? ? ? ? 2.767 ? ? metalc18 metalc ? ? A DG 22 O6 ? ? ? 1_555 G K . K ? ? A DG 22 A K 105 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc19 metalc ? ? D EDO . O1 ? ? ? 1_555 H K . K ? ? A EDO 102 A K 106 1_555 ? ? ? ? ? ? ? 3.321 ? ? metalc20 metalc ? ? D EDO . O2 ? ? ? 1_555 H K . K ? ? A EDO 102 A K 106 1_555 ? ? ? ? ? ? ? 2.978 ? ? metalc21 metalc ? ? H K . K ? ? ? 1_554 B DT 6 O2 ? ? A K 106 B DT 6 1_555 ? ? ? ? ? ? ? 2.960 ? ? metalc22 metalc ? ? H K . K ? ? ? 1_555 B DT 18 O2 ? ? A K 106 B DT 18 1_555 ? ? ? ? ? ? ? 2.959 ? ? metalc23 metalc ? ? H K . K ? ? ? 1_555 I EDO . O1 ? ? A K 106 B EDO 501 1_556 ? ? ? ? ? ? ? 3.145 ? ? metalc24 metalc ? ? H K . K ? ? ? 1_555 I EDO . O2 ? ? A K 106 B EDO 501 1_556 ? ? ? ? ? ? ? 3.316 ? ? metalc25 metalc ? ? H K . K ? ? ? 1_555 N HOH . O ? ? A K 106 B HOH 601 1_556 ? ? ? ? ? ? ? 3.016 ? ? metalc26 metalc ? ? H K . K ? ? ? 1_555 N HOH . O ? ? A K 106 B HOH 602 1_556 ? ? ? ? ? ? ? 2.912 ? ? metalc27 metalc ? ? B DG 2 O6 ? ? ? 1_555 L K . K ? ? B DG 2 B K 504 1_555 ? ? ? ? ? ? ? 2.754 ? ? metalc28 metalc ? ? B DG 3 O6 ? ? ? 1_555 J K . K ? ? B DG 3 B K 502 1_555 ? ? ? ? ? ? ? 2.995 ? ? metalc29 metalc ? ? B DG 3 O6 ? ? ? 1_555 L K . K ? ? B DG 3 B K 504 1_555 ? ? ? ? ? ? ? 2.930 ? ? metalc30 metalc ? ? B DG 4 O6 ? ? ? 1_555 J K . K ? ? B DG 4 B K 502 1_555 ? ? ? ? ? ? ? 2.672 ? ? metalc31 metalc ? ? B DG 8 O6 ? ? ? 1_555 L K . K ? ? B DG 8 B K 504 1_555 ? ? ? ? ? ? ? 2.944 ? ? metalc32 metalc ? ? B DG 9 O6 ? ? ? 1_555 J K . K ? ? B DG 9 B K 502 1_555 ? ? ? ? ? ? ? 3.255 ? ? metalc33 metalc ? ? B DG 9 O6 ? ? ? 1_555 L K . K ? ? B DG 9 B K 504 1_555 ? ? ? ? ? ? ? 2.880 ? ? metalc34 metalc ? ? B DG 10 O6 ? ? ? 1_555 J K . K ? ? B DG 10 B K 502 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc35 metalc ? ? B DG 14 O6 ? ? ? 1_555 L K . K ? ? B DG 14 B K 504 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc36 metalc ? ? B DG 15 O6 ? ? ? 1_555 J K . K ? ? B DG 15 B K 502 1_555 ? ? ? ? ? ? ? 3.024 ? ? metalc37 metalc ? ? B DG 15 O6 ? ? ? 1_555 L K . K ? ? B DG 15 B K 504 1_555 ? ? ? ? ? ? ? 2.915 ? ? metalc38 metalc ? ? B DG 16 O6 ? ? ? 1_555 J K . K ? ? B DG 16 B K 502 1_555 ? ? ? ? ? ? ? 2.663 ? ? metalc39 metalc ? ? B DG 20 O6 ? ? ? 1_555 L K . K ? ? B DG 20 B K 504 1_555 ? ? ? ? ? ? ? 2.672 ? ? metalc40 metalc ? ? B DG 21 O6 ? ? ? 1_555 J K . K ? ? B DG 21 B K 502 1_555 ? ? ? ? ? ? ? 2.919 ? ? metalc41 metalc ? ? B DG 21 O6 ? ? ? 1_555 L K . K ? ? B DG 21 B K 504 1_555 ? ? ? ? ? ? ? 2.770 ? ? metalc42 metalc ? ? B DG 22 O6 ? ? ? 1_555 J K . K ? ? B DG 22 B K 502 1_555 ? ? ? ? ? ? ? 2.732 ? ? hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 12 O2 ? ? A DA 1 B DT 12 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog2 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DT 12 O2 ? ? ? 1_555 B DA 1 N6 ? ? A DT 12 B DA 1 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog21 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DG 8 O6 ? ? B DG 2 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DG 8 N7 ? ? B DG 2 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DG 2 N7 ? ? ? 1_555 B DG 20 N2 ? ? B DG 2 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DG 20 N1 ? ? B DG 2 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DG 9 O6 ? ? B DG 3 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DG 9 N7 ? ? B DG 3 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 3 N7 ? ? ? 1_555 B DG 21 N2 ? ? B DG 3 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 3 O6 ? ? ? 1_555 B DG 21 N1 ? ? B DG 3 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 10 O6 ? ? B DG 4 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 10 N7 ? ? B DG 4 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? B DG 4 N7 ? ? ? 1_555 B DG 22 N2 ? ? B DG 4 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? B DG 4 O6 ? ? ? 1_555 B DG 22 N1 ? ? B DG 4 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DG 14 O6 ? ? B DG 8 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DG 14 N7 ? ? B DG 8 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? B DG 9 N1 ? ? ? 1_555 B DG 15 O6 ? ? B DG 9 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? B DG 9 N2 ? ? ? 1_555 B DG 15 N7 ? ? B DG 9 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DG 16 O6 ? ? B DG 10 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DG 16 N7 ? ? B DG 10 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? B DG 14 N1 ? ? ? 1_555 B DG 20 O6 ? ? B DG 14 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog46 hydrog ? ? B DG 14 N2 ? ? ? 1_555 B DG 20 N7 ? ? B DG 14 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? B DG 15 N1 ? ? ? 1_555 B DG 21 O6 ? ? B DG 15 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? B DG 15 N2 ? ? ? 1_555 B DG 21 N7 ? ? B DG 15 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? B DG 16 N1 ? ? ? 1_555 B DG 22 O6 ? ? B DG 16 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? B DG 16 N2 ? ? ? 1_555 B DG 22 N7 ? ? B DG 16 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 6XCL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.015618 _atom_sites.fract_transf_matrix[1][2] 0.009017 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018034 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023680 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 ? ? 4.54127 84.28225 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? PT ? ? 77.57157 ? ? ? 4.12673 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DA 13 13 13 DA DA A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DT 18 18 18 DT DT A . n A 1 19 DA 19 19 19 DA DA A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DG 22 22 22 DG DG A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DT 6 6 6 DT DT B . n B 1 7 DA 7 7 7 DA DA B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DG 10 10 10 DG DG B . n B 1 11 DT 11 11 11 DT DT B . n B 1 12 DT 12 12 12 DT DT B . n B 1 13 DA 13 13 13 DA DA B . n B 1 14 DG 14 14 14 DG DG B . n B 1 15 DG 15 15 15 DG DG B . n B 1 16 DG 16 16 16 DG DG B . n B 1 17 DT 17 17 17 DT DT B . n B 1 18 DT 18 18 18 DT DT B . n B 1 19 DA 19 19 19 DA DA B . n B 1 20 DG 20 20 20 DG DG B . n B 1 21 DG 21 21 21 DG DG B . n B 1 22 DG 22 22 22 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V4A 1 101 201 V4A DRG A . D 3 EDO 1 102 601 EDO EDO A . E 2 V4A 1 103 201 V4A DRG A . F 4 K 1 104 2 K K A . G 4 K 1 105 3 K K A . H 4 K 1 106 4 K K A . I 3 EDO 1 501 501 EDO EDO B . J 4 K 1 502 24 K K B . K 2 V4A 1 503 401 V4A DRG B . L 4 K 1 504 1 K K B . M 5 HOH 1 201 8 HOH HOH A . M 5 HOH 2 202 1 HOH HOH A . N 5 HOH 1 601 4 HOH HOH B . N 5 HOH 2 602 6 HOH HOH B . N 5 HOH 3 603 3 HOH HOH B . N 5 HOH 4 604 2 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 79.0 ? 2 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 68.7 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 88.0 ? 4 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 127.6 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 63.7 ? 6 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 74.2 ? 7 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 121.1 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 148.3 ? 9 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 78.8 ? 10 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 84.9 ? 11 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 161.9 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 97.3 ? 13 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 129.1 ? 14 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 63.7 ? 15 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 70.6 ? 16 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 82.2 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 137.1 ? 18 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 120.1 ? 19 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 149.8 ? 20 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 73.4 ? 21 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 89.0 ? 22 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 92.4 ? 23 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 58.7 ? 24 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 144.9 ? 25 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 97.6 ? 26 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 135.4 ? 27 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 71.0 ? 28 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 84.2 ? 29 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 69.3 ? 30 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 65.4 ? 31 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 90.9 ? 32 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 128.1 ? 33 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 82.1 ? 34 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 73.0 ? 35 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 104.0 ? 36 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 155.7 ? 37 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 65.7 ? 38 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 84.7 ? 39 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 154.3 ? 40 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 123.7 ? 41 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 130.2 ? 42 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 77.4 ? 43 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 72.5 ? 44 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 60.4 ? 45 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 118.4 ? 46 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 98.1 ? 47 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 158.2 ? 48 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 73.6 ? 49 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 94.9 ? 50 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 92.0 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 79.0 ? 52 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 157.3 ? 53 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 124.7 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 125.1 ? 55 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 71.4 ? 56 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? G K . ? A K 105 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 70.0 ? 57 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? A DT 18 ? A DT 18 ? 1_555 64.5 ? 58 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O1 ? D EDO . ? A EDO 102 ? 1_555 68.8 ? 59 O2 ? A DT 18 ? A DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O1 ? D EDO . ? A EDO 102 ? 1_555 4.5 ? 60 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? D EDO . ? A EDO 102 ? 1_555 64.8 ? 61 O2 ? A DT 18 ? A DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? D EDO . ? A EDO 102 ? 1_555 4.2 ? 62 O1 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? D EDO . ? A EDO 102 ? 1_555 4.8 ? 63 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 6 ? B DT 6 ? 1_555 132.7 ? 64 O2 ? A DT 18 ? A DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 6 ? B DT 6 ? 1_555 68.3 ? 65 O1 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 6 ? B DT 6 ? 1_555 63.9 ? 66 O2 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 6 ? B DT 6 ? 1_555 67.9 ? 67 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 18 ? B DT 18 ? 1_555 68.3 ? 68 O2 ? A DT 18 ? A DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 18 ? B DT 18 ? 1_555 7.5 ? 69 O1 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 18 ? B DT 18 ? 1_555 5.1 ? 70 O2 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 18 ? B DT 18 ? 1_555 4.1 ? 71 O2 ? B DT 6 ? B DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? B DT 18 ? B DT 18 ? 1_555 64.5 ? 72 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O1 ? I EDO . ? B EDO 501 ? 1_556 66.1 ? 73 O2 ? A DT 18 ? A DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O1 ? I EDO . ? B EDO 501 ? 1_556 5.2 ? 74 O1 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O1 ? I EDO . ? B EDO 501 ? 1_556 4.5 ? 75 O2 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O1 ? I EDO . ? B EDO 501 ? 1_556 1.4 ? 76 O2 ? B DT 6 ? B DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O1 ? I EDO . ? B EDO 501 ? 1_556 66.6 ? 77 O2 ? B DT 18 ? B DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O1 ? I EDO . ? B EDO 501 ? 1_556 2.6 ? 78 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? I EDO . ? B EDO 501 ? 1_556 67.2 ? 79 O2 ? A DT 18 ? A DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? I EDO . ? B EDO 501 ? 1_556 2.8 ? 80 O1 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? I EDO . ? B EDO 501 ? 1_556 1.7 ? 81 O2 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? I EDO . ? B EDO 501 ? 1_556 4.3 ? 82 O2 ? B DT 6 ? B DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? I EDO . ? B EDO 501 ? 1_556 65.5 ? 83 O2 ? B DT 18 ? B DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O2 ? I EDO . ? B EDO 501 ? 1_556 5.9 ? 84 O1 ? I EDO . ? B EDO 501 ? 1_556 K ? H K . ? A K 106 ? 1_554 O2 ? I EDO . ? B EDO 501 ? 1_556 4.4 ? 85 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 601 ? 1_556 68.4 ? 86 O2 ? A DT 18 ? A DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 601 ? 1_556 3.9 ? 87 O1 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 601 ? 1_556 1.8 ? 88 O2 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 601 ? 1_556 5.8 ? 89 O2 ? B DT 6 ? B DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 601 ? 1_556 64.4 ? 90 O2 ? B DT 18 ? B DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 601 ? 1_556 6.9 ? 91 O1 ? I EDO . ? B EDO 501 ? 1_556 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 601 ? 1_556 5.8 ? 92 O2 ? I EDO . ? B EDO 501 ? 1_556 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 601 ? 1_556 1.6 ? 93 O2 ? A DT 6 ? A DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 64.7 ? 94 O2 ? A DT 18 ? A DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 6.6 ? 95 O1 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 6.6 ? 96 O2 ? D EDO . ? A EDO 102 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 2.4 ? 97 O2 ? B DT 6 ? B DT 6 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 68.1 ? 98 O2 ? B DT 18 ? B DT 18 ? 1_555 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 3.5 ? 99 O1 ? I EDO . ? B EDO 501 ? 1_556 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 2.2 ? 100 O2 ? I EDO . ? B EDO 501 ? 1_556 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 6.5 ? 101 O ? N HOH . ? B HOH 601 ? 1_556 K ? H K . ? A K 106 ? 1_554 O ? N HOH . ? B HOH 602 ? 1_556 7.9 ? 102 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 77.8 ? 103 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 69.8 ? 104 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 90.4 ? 105 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 132.6 ? 106 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 71.6 ? 107 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 75.1 ? 108 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 115.6 ? 109 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 153.4 ? 110 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 74.5 ? 111 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 83.2 ? 112 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 154.7 ? 113 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 102.6 ? 114 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 135.2 ? 115 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 69.2 ? 116 O6 ? B DG 14 ? B DG 14 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 75.2 ? 117 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 73.2 ? 118 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 131.7 ? 119 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 113.8 ? 120 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 152.5 ? 121 O6 ? B DG 14 ? B DG 14 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 74.9 ? 122 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 89.0 ? 123 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 88.7 ? 124 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 61.1 ? 125 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 147.9 ? 126 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 106.3 ? 127 O6 ? B DG 14 ? B DG 14 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 137.5 ? 128 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 70.3 ? 129 O6 ? B DG 20 ? B DG 20 ? 1_555 K ? L K . ? B K 504 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 80.2 ? 130 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 67.9 ? 131 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 65.7 ? 132 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 90.2 ? 133 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 127.5 ? 134 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 81.9 ? 135 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 72.8 ? 136 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 98.6 ? 137 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 153.3 ? 138 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 63.0 ? 139 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 89.6 ? 140 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 16 ? B DG 16 ? 1_555 150.6 ? 141 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 16 ? B DG 16 ? 1_555 130.5 ? 142 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 16 ? B DG 16 ? 1_555 127.5 ? 143 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 16 ? B DG 16 ? 1_555 81.1 ? 144 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 16 ? B DG 16 ? 1_555 72.2 ? 145 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 58.7 ? 146 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 118.3 ? 147 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 94.0 ? 148 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 156.5 ? 149 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 66.9 ? 150 O6 ? B DG 16 ? B DG 16 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 92.5 ? 151 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 22 ? B DG 22 ? 1_555 86.8 ? 152 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 22 ? B DG 22 ? 1_555 80.9 ? 153 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 22 ? B DG 22 ? 1_555 152.4 ? 154 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 22 ? B DG 22 ? 1_555 130.7 ? 155 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 22 ? B DG 22 ? 1_555 122.6 ? 156 O6 ? B DG 16 ? B DG 16 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 22 ? B DG 22 ? 1_555 76.0 ? 157 O6 ? B DG 21 ? B DG 21 ? 1_555 K ? J K . ? B K 502 ? 1_555 O6 ? B DG 22 ? B DG 22 ? 1_555 68.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-11-04 2 'Structure model' 1 1 2021-02-03 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 2 'Structure model' '_citation_author.identifier_ORCID' 6 2 'Structure model' '_citation_author.name' 7 3 'Structure model' '_database_2.pdbx_DOI' 8 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.1_3865 1 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? MxDC ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6XCL _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.11 108.30 2.81 0.30 N 2 1 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.23 108.30 1.93 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 EDO C1 C N N 110 EDO O1 O N N 111 EDO C2 C N N 112 EDO O2 O N N 113 EDO H11 H N N 114 EDO H12 H N N 115 EDO HO1 H N N 116 EDO H21 H N N 117 EDO H22 H N N 118 EDO HO2 H N N 119 HOH O O N N 120 HOH H1 H N N 121 HOH H2 H N N 122 K K K N N 123 V4A C1 C Y N 124 V4A C2 C Y N 125 V4A C3 C Y N 126 V4A C4 C Y N 127 V4A C5 C Y N 128 V4A C6 C Y N 129 V4A C7 C Y N 130 V4A C8 C Y N 131 V4A C9 C Y N 132 V4A C10 C Y N 133 V4A C11 C Y N 134 V4A N1 N Y N 135 V4A N2 N Y N 136 V4A N3 N Y N 137 V4A N4 N Y N 138 V4A CAA C Y N 139 V4A CAB C Y N 140 V4A CAC C Y N 141 V4A CAD C Y N 142 V4A CAE C Y N 143 V4A CAF C Y N 144 V4A CAH C Y N 145 V4A CAK C Y N 146 V4A CAL C Y N 147 V4A CAM C Y N 148 V4A CAN C Y N 149 V4A NAG N Y N 150 V4A NAI N Y N 151 V4A NAJ N Y N 152 V4A NBD N Y N 153 V4A H1 H N N 154 V4A H2 H N N 155 V4A H3 H N N 156 V4A H4 H N N 157 V4A H5 H N N 158 V4A H6 H N N 159 V4A H7 H N N 160 V4A H8 H N N 161 V4A H9 H N N 162 V4A H10 H N N 163 V4A H11 H N N 164 V4A H12 H N N 165 V4A H13 H N N 166 V4A H14 H N N 167 V4A H15 H N N 168 V4A H16 H N N 169 V4A PT PT N N 170 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 EDO C1 O1 sing N N 115 EDO C1 C2 sing N N 116 EDO C1 H11 sing N N 117 EDO C1 H12 sing N N 118 EDO O1 HO1 sing N N 119 EDO C2 O2 sing N N 120 EDO C2 H21 sing N N 121 EDO C2 H22 sing N N 122 EDO O2 HO2 sing N N 123 HOH O H1 sing N N 124 HOH O H2 sing N N 125 V4A C1 C2 doub Y N 126 V4A C1 N4 sing Y N 127 V4A C2 C3 sing Y N 128 V4A C3 C4 doub Y N 129 V4A C4 C5 sing Y N 130 V4A C5 C6 sing N N 131 V4A C5 N4 doub Y N 132 V4A C6 N1 sing Y N 133 V4A C6 N3 doub Y N 134 V4A C7 C11 sing Y N 135 V4A C7 N1 sing Y N 136 V4A C7 N2 doub Y N 137 V4A C8 C9 doub Y N 138 V4A C8 N1 sing Y N 139 V4A C9 C10 sing Y N 140 V4A C10 C11 doub Y N 141 V4A N2 N3 sing Y N 142 V4A N3 PT sing N N 143 V4A CAA CAB doub Y N 144 V4A CAA NBD sing Y N 145 V4A PT NAJ sing N N 146 V4A PT NBD sing N N 147 V4A CAB CAC sing Y N 148 V4A CAC CAD doub Y N 149 V4A CAD CAE sing Y N 150 V4A CAE CAF sing N N 151 V4A CAE NBD doub Y N 152 V4A CAF NAG sing Y N 153 V4A CAF NAJ doub Y N 154 V4A CAH CAN sing Y N 155 V4A CAH NAG sing Y N 156 V4A CAH NAI doub Y N 157 V4A CAK CAL doub Y N 158 V4A CAK NAG sing Y N 159 V4A CAL CAM sing Y N 160 V4A CAM CAN doub Y N 161 V4A NAI NAJ sing Y N 162 V4A C1 H1 sing N N 163 V4A C2 H2 sing N N 164 V4A C3 H3 sing N N 165 V4A C4 H4 sing N N 166 V4A C8 H5 sing N N 167 V4A C9 H6 sing N N 168 V4A C10 H7 sing N N 169 V4A C11 H8 sing N N 170 V4A CAA H9 sing N N 171 V4A CAB H10 sing N N 172 V4A CAC H11 sing N N 173 V4A CAD H12 sing N N 174 V4A CAK H13 sing N N 175 V4A CAL H14 sing N N 176 V4A CAM H15 sing N N 177 V4A CAN H16 sing N N 178 V4A N4 PT sing N N 179 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6XCL 'double helix' 6XCL 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 12 1_555 -3.169 -0.688 -0.048 -18.757 -29.581 3.941 1 A_DA1:DT12_B A 1 ? B 12 ? ? 1 1 A DT 12 1_555 B DA 1 1_555 1.244 1.166 -0.335 -0.639 -32.885 -96.360 2 A_DT12:DA1_B A 12 ? B 1 ? ? 1 1 A DG 16 1_555 A DG 22 1_555 1.756 3.212 0.065 3.517 -6.881 -91.729 3 A_DG16:DG22_A A 16 ? A 22 ? 6 3 1 A DG 3 1_555 A DG 21 1_555 -1.138 -3.477 0.162 -1.516 0.416 92.431 4 A_DG3:DG21_A A 3 ? A 21 ? 6 3 1 A DG 8 1_555 A DG 2 1_555 -1.566 -3.052 -0.104 0.354 4.276 93.330 5 A_DG8:DG2_A A 8 ? A 2 ? 6 3 1 B DG 8 1_555 B DG 14 1_555 2.131 3.042 -0.150 1.929 -4.318 -87.706 6 B_DG8:DG14_B B 8 ? B 14 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 16 1_555 A DG 22 1_555 A DG 3 1_555 A DG 21 1_555 -1.158 -2.126 -3.061 -3.935 -2.997 58.016 -2.329 1.379 -2.881 -3.084 4.049 58.208 1 AA_DG16DG3:DG21DG22_AA A 16 ? A 22 ? A 3 ? A 21 ? 1 A DG 3 1_555 A DG 21 1_555 A DG 8 1_555 A DG 2 1_555 -0.727 -1.529 -3.369 -0.284 3.755 64.684 -1.263 0.691 -3.441 3.507 0.265 64.782 2 AA_DG3DG8:DG2DG21_AA A 3 ? A 21 ? A 8 ? A 2 ? 1 A DG 8 1_555 A DG 2 1_555 B DG 8 1_555 B DG 14 1_555 -6.402 -2.380 -0.166 -15.117 -175.041 155.721 -1.175 3.200 0.451 -87.568 7.563 179.094 3 AB_DG8DG8:DG14DG2_BA A 8 ? A 2 ? B 8 ? B 14 ? # _pdbx_audit_support.funding_organization 'Natural Sciences and Engineering Research Council (NSERC, Canada)' _pdbx_audit_support.country Canada _pdbx_audit_support.grant_number 315311-2013 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id V4A _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id V4A _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Platinum(II) bis[3-(pyridin-2-yl)-[1,2,4]triazolo[4,3-a]pyridine]' V4A 3 1,2-ETHANEDIOL EDO 4 'POTASSIUM ION' K 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3T5E _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 3' _space_group.name_Hall 'P 3' _space_group.IT_number 143 _space_group.crystal_system trigonal _space_group.id 1 #