HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-JUN-20 6XDF TITLE CRYSTAL STRUCTURE OF IRE1A IN COMPLEX WITH G-4100 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENDOPLASMIC RETICULUM-TO-NUCLEUS SIGNALING 1,INOSITOL- COMPND 5 REQUIRING PROTEIN 1,HIRE1P,IRE1-ALPHA,IRE1A; COMPND 6 EC: 2.7.11.1,3.1.26.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERN1, IRE1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, RNASE, INHIBITOR, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.STEINBACHER,W.WANG REVDAT 2 06-MAR-24 6XDF 1 REMARK REVDAT 1 21-APR-21 6XDF 0 JRNL AUTH R.E.BEVERIDGE,H.A.WALLWEBER,A.ASHKENAZI,M.BERESINI, JRNL AUTH 2 K.R.CLARK,P.GIBBONS,E.GHIRO,S.KAUFMAN,A.LARIVEE,M.LEBLANC, JRNL AUTH 3 J.P.LECLERC,A.LEMIRE,C.LY,J.RUDOLPH,J.B.SCHWARZ, JRNL AUTH 4 S.SRIVASTAVA,W.WANG,L.ZHAO,M.G.BRAUN JRNL TITL IDENTIFICATION OF BRAF-SPARING AMINO-THIENOPYRIMIDINES WITH JRNL TITL 2 POTENT IRE1 ALPHA INHIBITORY ACTIVITY. JRNL REF ACS MED.CHEM.LETT. V. 11 2389 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 33335661 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00344 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.70000 REMARK 3 B22 (A**2) : -2.83000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.440 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.248 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.558 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6XDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 92.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 5.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 92.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 53.08 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (V/V) ISOPROPANOL, 11% (W/V) REMARK 280 PEG4000, 0.1 M NA-CITRATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.45950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.38350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.45950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.38350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1159 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1168 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 547 REMARK 465 SER A 548 REMARK 465 SER A 549 REMARK 465 PRO A 550 REMARK 465 SER A 551 REMARK 465 LEU A 552 REMARK 465 GLU A 553 REMARK 465 GLN A 554 REMARK 465 ASP A 555 REMARK 465 ASP A 556 REMARK 465 GLY A 557 REMARK 465 ASP A 558 REMARK 465 GLU A 559 REMARK 465 GLY A 583 REMARK 465 PHE A 658 REMARK 465 ALA A 659 REMARK 465 HIS A 660 REMARK 465 LEU A 661 REMARK 465 GLU A 967 REMARK 465 PRO A 968 REMARK 465 GLN A 969 REMARK 465 PRO A 970 REMARK 465 PRO A 971 REMARK 465 VAL A 972 REMARK 465 THR A 973 REMARK 465 PRO A 974 REMARK 465 ASP A 975 REMARK 465 ALA A 976 REMARK 465 LEU A 977 REMARK 465 GLY B 547 REMARK 465 SER B 548 REMARK 465 SER B 549 REMARK 465 PRO B 550 REMARK 465 SER B 551 REMARK 465 LEU B 552 REMARK 465 GLU B 553 REMARK 465 GLN B 554 REMARK 465 ASP B 555 REMARK 465 ASP B 556 REMARK 465 GLY B 557 REMARK 465 ASP B 558 REMARK 465 GLU B 559 REMARK 465 GLU B 560 REMARK 465 THR B 561 REMARK 465 GLY B 583 REMARK 465 GLY B 730 REMARK 465 VAL B 731 REMARK 465 PRO B 965 REMARK 465 PRO B 966 REMARK 465 GLU B 967 REMARK 465 PRO B 968 REMARK 465 GLN B 969 REMARK 465 PRO B 970 REMARK 465 PRO B 971 REMARK 465 VAL B 972 REMARK 465 THR B 973 REMARK 465 PRO B 974 REMARK 465 ASP B 975 REMARK 465 ALA B 976 REMARK 465 LEU B 977 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 585 CD1 REMARK 480 ASN A 593 CG OD1 ND2 REMARK 480 ILE A 601 CD1 REMARK 480 LEU A 602 CD1 CD2 REMARK 480 SER A 607 OG REMARK 480 ARG A 611 NE CZ NH1 NH2 REMARK 480 GLN A 614 CD OE1 NE2 REMARK 480 LYS A 633 CD CE NZ REMARK 480 ARG A 635 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 636 CD OE1 NE2 REMARK 480 LEU A 663 CD1 CD2 REMARK 480 GLU A 745 CD OE1 OE2 REMARK 480 LYS A 828 NZ REMARK 480 LYS A 851 NZ REMARK 480 LYS A 860 NZ REMARK 480 ARG A 867 CD NE CZ NH1 NH2 REMARK 480 ARG A 887 CD NE CZ NH1 NH2 REMARK 480 LYS A 888 CD CE NZ REMARK 480 PHE A 889 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG A 890 CD NE CZ NH1 NH2 REMARK 480 LYS A 893 NZ REMARK 480 LYS A 907 NZ REMARK 480 GLU A 917 CD OE1 OE2 REMARK 480 GLU A 920 CD OE1 OE2 REMARK 480 CYS B 572 SG REMARK 480 LYS B 574 CG CD CE NZ REMARK 480 GLU B 582 CG CD OE1 OE2 REMARK 480 ILE B 585 CD1 REMARK 480 ARG B 588 CZ NH1 NH2 REMARK 480 ILE B 601 CD1 REMARK 480 SER B 607 OG REMARK 480 ASP B 610 CG OD1 OD2 REMARK 480 LYS B 633 CD CE NZ REMARK 480 ARG B 635 CD NE CZ NH1 NH2 REMARK 480 GLN B 636 CG CD OE1 NE2 REMARK 480 LYS B 656 CG CD CE NZ REMARK 480 GLU B 664 CD OE1 OE2 REMARK 480 LYS B 704 CE NZ REMARK 480 LYS B 748 CD CE NZ REMARK 480 GLU B 749 CD OE1 OE2 REMARK 480 LYS B 777 CD CE NZ REMARK 480 LEU B 779 CD1 CD2 REMARK 480 GLN B 780 CD OE1 NE2 REMARK 480 LYS B 799 NZ REMARK 480 LYS B 811 CE NZ REMARK 480 LYS B 824 NZ REMARK 480 LYS B 851 NZ REMARK 480 LEU B 854 CD1 CD2 REMARK 480 LYS B 860 CD CE NZ REMARK 480 ARG B 864 NE CZ NH1 NH2 REMARK 480 ARG B 867 CD NE CZ NH1 NH2 REMARK 480 GLU B 876 CD OE1 OE2 REMARK 480 ARG B 887 CD NE CZ NH1 NH2 REMARK 480 PHE B 889 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG B 890 CD NE CZ NH1 NH2 REMARK 480 LYS B 893 CE NZ REMARK 480 GLU B 920 CD OE1 OE2 REMARK 480 GLU B 949 CD OE1 OE2 REMARK 480 HIS B 963 CG ND1 CD2 CE1 NE2 REMARK 480 GLU B 964 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 580 N GLU B 582 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 581 128.31 60.76 REMARK 500 ASN A 593 14.81 56.01 REMARK 500 ARG A 687 -9.60 78.58 REMARK 500 ASP A 688 39.67 -143.14 REMARK 500 ASP A 711 76.83 60.90 REMARK 500 LEU A 792 42.54 -107.17 REMARK 500 GLU A 798 44.56 -108.82 REMARK 500 ARG A 864 108.97 -55.23 REMARK 500 MET A 872 -62.17 68.72 REMARK 500 LYS A 888 -53.03 -137.70 REMARK 500 VAL B 566 -76.31 -115.97 REMARK 500 ALA B 581 57.07 -39.81 REMARK 500 ARG B 687 -0.87 76.45 REMARK 500 ASP B 688 36.96 -154.99 REMARK 500 ASP B 711 76.76 57.93 REMARK 500 LEU B 792 41.63 -107.42 REMARK 500 LYS B 851 52.66 -115.69 REMARK 500 MET B 872 -54.25 69.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 622 O REMARK 620 2 VAL A 625 O 62.9 REMARK 620 3 HOH A1150 O 72.0 76.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 620 O REMARK 620 2 HIS B 622 O 75.0 REMARK 620 3 VAL B 625 O 96.8 70.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N94 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 1001 DBREF 6XDF A 547 977 UNP O75460 ERN1_HUMAN 547 977 DBREF 6XDF B 547 977 UNP O75460 ERN1_HUMAN 547 977 SEQRES 1 A 431 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU SEQRES 2 A 431 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS SEQRES 3 A 431 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE SEQRES 4 A 431 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL SEQRES 5 A 431 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG SEQRES 6 A 431 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN SEQRES 7 A 431 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE SEQRES 8 A 431 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN SEQRES 9 A 431 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU SEQRES 10 A 431 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU SEQRES 11 A 431 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU SEQRES 12 A 431 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS SEQRES 13 A 431 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS SEQRES 14 A 431 LYS LYS LEU ALA VAL GLY ARG HIS SER PHE SER ARG ARG SEQRES 15 A 431 SER GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU SEQRES 16 A 431 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR SEQRES 17 A 431 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL SEQRES 18 A 431 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN SEQRES 19 A 431 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP SEQRES 20 A 431 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG SEQRES 21 A 431 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS SEQRES 22 A 431 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE SEQRES 23 A 431 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SEQRES 24 A 431 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE SEQRES 25 A 431 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS SEQRES 26 A 431 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR SEQRES 27 A 431 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL SEQRES 28 A 431 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS SEQRES 29 A 431 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SEQRES 30 A 431 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG SEQRES 31 A 431 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU SEQRES 32 A 431 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE SEQRES 33 A 431 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP SEQRES 34 A 431 ALA LEU SEQRES 1 B 431 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU SEQRES 2 B 431 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS SEQRES 3 B 431 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE SEQRES 4 B 431 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL SEQRES 5 B 431 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG SEQRES 6 B 431 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN SEQRES 7 B 431 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE SEQRES 8 B 431 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN SEQRES 9 B 431 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU SEQRES 10 B 431 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU SEQRES 11 B 431 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU SEQRES 12 B 431 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS SEQRES 13 B 431 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS SEQRES 14 B 431 LYS LYS LEU ALA VAL GLY ARG HIS SER PHE SER ARG ARG SEQRES 15 B 431 SER GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU SEQRES 16 B 431 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR SEQRES 17 B 431 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL SEQRES 18 B 431 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN SEQRES 19 B 431 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP SEQRES 20 B 431 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG SEQRES 21 B 431 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS SEQRES 22 B 431 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE SEQRES 23 B 431 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SEQRES 24 B 431 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE SEQRES 25 B 431 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS SEQRES 26 B 431 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR SEQRES 27 B 431 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL SEQRES 28 B 431 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS SEQRES 29 B 431 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SEQRES 30 B 431 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG SEQRES 31 B 431 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU SEQRES 32 B 431 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE SEQRES 33 B 431 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP SEQRES 34 B 431 ALA LEU HET NA A1001 1 HET N94 A1002 31 HET NA B1001 1 HETNAM NA SODIUM ION HETNAM N94 4-AMINO-N-(6-CHLORO-2-FLUORO-3-{[(PYRROLIDIN-1-YL) HETNAM 2 N94 SULFONYL]AMINO}PHENYL)QUINAZOLINE-8-CARBOXAMIDE FORMUL 3 NA 2(NA 1+) FORMUL 4 N94 C19 H18 CL F N6 O3 S FORMUL 6 HOH *108(H2 O) HELIX 1 AA1 LEU A 602 GLU A 604 5 3 HELIX 2 AA2 CYS A 605 GLU A 618 1 14 HELIX 3 AA3 LEU A 649 LYS A 656 1 8 HELIX 4 AA4 GLU A 664 LEU A 682 1 19 HELIX 5 AA5 ALA A 739 SER A 744 1 6 HELIX 6 AA6 TYR A 753 GLU A 770 1 18 HELIX 7 AA7 LYS A 777 LEU A 779 5 3 HELIX 8 AA8 GLN A 780 GLY A 788 1 9 HELIX 9 AA9 LYS A 799 ILE A 813 1 15 HELIX 10 AB1 ASP A 816 ARG A 820 5 5 HELIX 11 AB2 SER A 822 LYS A 828 1 7 HELIX 12 AB3 HIS A 829 TRP A 833 5 5 HELIX 13 AB4 SER A 834 GLU A 850 1 17 HELIX 14 AB5 GLY A 856 ARG A 864 1 9 HELIX 15 AB6 GLY A 865 LYS A 871 1 7 HELIX 16 AB7 ASP A 873 ASN A 877 5 5 HELIX 17 AB8 THR A 879 LEU A 886 1 8 HELIX 18 AB9 SER A 896 HIS A 910 1 15 HELIX 19 AC1 TYR A 911 LEU A 914 5 4 HELIX 20 AC2 PRO A 915 GLY A 923 1 9 HELIX 21 AC3 PRO A 926 PHE A 937 1 12 HELIX 22 AC4 HIS A 939 MET A 948 1 10 HELIX 23 AC5 GLU A 949 SER A 952 5 4 HELIX 24 AC6 GLU A 954 GLN A 958 5 5 HELIX 25 AC7 LEU B 602 GLU B 604 5 3 HELIX 26 AC8 CYS B 605 ASP B 620 1 16 HELIX 27 AC9 LEU B 649 GLN B 655 1 7 HELIX 28 AD1 GLU B 664 LEU B 682 1 19 HELIX 29 AD2 LYS B 690 HIS B 692 5 3 HELIX 30 AD3 ALA B 739 LEU B 743 5 5 HELIX 31 AD4 TYR B 753 GLU B 770 1 18 HELIX 32 AD5 LYS B 777 GLY B 788 1 12 HELIX 33 AD6 LYS B 799 ILE B 813 1 15 HELIX 34 AD7 ASP B 816 ARG B 820 5 5 HELIX 35 AD8 SER B 822 LYS B 828 1 7 HELIX 36 AD9 HIS B 829 TRP B 833 5 5 HELIX 37 AE1 SER B 834 GLU B 850 1 17 HELIX 38 AE2 GLY B 856 GLU B 863 1 8 HELIX 39 AE3 GLY B 865 VAL B 870 1 6 HELIX 40 AE4 ASP B 873 ILE B 878 5 6 HELIX 41 AE5 THR B 879 LYS B 888 1 10 HELIX 42 AE6 SER B 896 HIS B 910 1 15 HELIX 43 AE7 TYR B 911 LEU B 914 5 4 HELIX 44 AE8 PRO B 915 GLY B 923 1 9 HELIX 45 AE9 PRO B 926 PHE B 937 1 12 HELIX 46 AF1 HIS B 939 MET B 948 1 10 HELIX 47 AF2 GLU B 949 SER B 952 5 4 SHEET 1 AA1 6 VAL A 564 VAL A 566 0 SHEET 2 AA1 6 ILE A 569 HIS A 579 -1 O ILE A 569 N VAL A 566 SHEET 3 AA1 6 ILE A 585 PHE A 591 -1 O MET A 590 N SER A 570 SHEET 4 AA1 6 ARG A 594 ILE A 601 -1 O VAL A 598 N TYR A 587 SHEET 5 AA1 6 GLN A 638 GLU A 643 -1 O ILE A 640 N LYS A 599 SHEET 6 AA1 6 TYR A 628 LYS A 633 -1 N CYS A 630 O ALA A 641 SHEET 1 AA2 3 CYS A 645 THR A 648 0 SHEET 2 AA2 3 ILE A 694 SER A 697 -1 O ILE A 696 N ALA A 647 SHEET 3 AA2 3 ALA A 707 ILE A 709 -1 O MET A 708 N LEU A 695 SHEET 1 AA3 2 ILE A 684 VAL A 685 0 SHEET 2 AA3 2 LYS A 716 LYS A 717 -1 O LYS A 716 N VAL A 685 SHEET 1 AA4 6 VAL B 564 ILE B 565 0 SHEET 2 AA4 6 ILE B 569 HIS B 579 -1 O PHE B 571 N VAL B 564 SHEET 3 AA4 6 ILE B 585 PHE B 591 -1 O MET B 590 N SER B 570 SHEET 4 AA4 6 ARG B 594 ILE B 601 -1 O VAL B 598 N TYR B 587 SHEET 5 AA4 6 GLN B 638 GLU B 643 -1 O ILE B 640 N LYS B 599 SHEET 6 AA4 6 TYR B 628 LYS B 633 -1 N CYS B 630 O ALA B 641 SHEET 1 AA5 3 CYS B 645 THR B 648 0 SHEET 2 AA5 3 ILE B 694 SER B 697 -1 O ILE B 696 N ALA B 647 SHEET 3 AA5 3 ALA B 707 ILE B 709 -1 O MET B 708 N LEU B 695 SHEET 1 AA6 2 ILE B 684 VAL B 685 0 SHEET 2 AA6 2 LYS B 716 LYS B 717 -1 O LYS B 716 N VAL B 685 LINK O HIS A 622 NA NA A1001 1555 1555 2.88 LINK O VAL A 625 NA NA A1001 1555 1555 2.82 LINK NA NA A1001 O HOH A1150 1555 1555 2.49 LINK O ASP B 620 NA NA B1001 1555 1555 2.79 LINK O HIS B 622 NA NA B1001 1555 1555 2.82 LINK O VAL B 625 NA NA B1001 1555 1555 2.66 CISPEP 1 LEU A 925 PRO A 926 0 2.62 CISPEP 2 LEU B 925 PRO B 926 0 -5.80 SITE 1 AC1 3 HIS A 622 VAL A 625 HOH A1150 SITE 1 AC2 15 HIS A 579 VAL A 586 ALA A 597 VAL A 598 SITE 2 AC2 15 LYS A 599 GLU A 612 VAL A 613 TYR A 628 SITE 3 AC2 15 ILE A 642 GLU A 643 CYS A 645 LEU A 695 SITE 4 AC2 15 ASP A 711 PHE A 712 HOH A1149 SITE 1 AC3 4 GLU A 621 ASP B 620 HIS B 622 VAL B 625 CRYST1 166.919 72.767 120.054 90.00 129.73 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005991 0.000000 0.004979 0.00000 SCALE2 0.000000 0.013742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010830 0.00000