HEADER DNA BINDING PROTEIN, HYDROLASE/DNA 12-JUN-20 6XEO TITLE STRUCTURE OF MFD BOUND TO DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION-REPAIR-COUPLING FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRCF; COMPND 5 EC: 3.6.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*AP*GP*GP*AP*TP*AP*CP*TP*TP*AP*CP*AP*GP*CP*CP*AP*TP*C)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*GP*AP*TP*GP*GP*CP*TP*GP*TP*AP*AP*GP*TP*AP*TP*CP*CP*T)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MFD, B1114, JW1100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS DNA TRANSLOCASE, TRANSCRIPTION-COUPLED DNA REPAIR, HELICASE, ATPASE, KEYWDS 2 DNA BINDING PROTEIN, HYDROLASE-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR C.BRUGGER,A.DEACONESCU REVDAT 2 06-MAR-24 6XEO 1 REMARK REVDAT 1 19-AUG-20 6XEO 0 JRNL AUTH C.BRUGGER,C.ZHANG,M.M.SUHANOVSKY,D.D.KIM,A.N.SINCLAIR, JRNL AUTH 2 D.LYUMKIS,A.M.DEACONESCU JRNL TITL MOLECULAR DETERMINANTS FOR DSDNA TRANSLOCATION BY THE JRNL TITL 2 TRANSCRIPTION-REPAIR COUPLING AND EVOLVABILITY FACTOR MFD. JRNL REF NAT COMMUN V. 11 3740 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32719356 JRNL DOI 10.1038/S41467-020-17457-1 REMARK 2 REMARK 2 RESOLUTION. 5.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : WARP, LEGINON, MOTIONCORR2, PHENIX, REMARK 3 RELION, CISTEM, CISTEM, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2EYQ REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.500 REMARK 3 NUMBER OF PARTICLES : 9822 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6XEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250014. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF MFD BOUND TO DSDNA REMARK 245 IN THE PRESENCE OF TRANSITION REMARK 245 STATE ANALOG ADP-ALFX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 2.5UL MFD-DNA COMPLEX AT 1.0 REMARK 245 MG/ML WAS APPLIED TO ULTRAUFOIL REMARK 245 R1.2/1.3 300 MESH GRIDS REMARK 245 (QUANTIFOIL) THAT WERE REMARK 245 PREVIOUSLY PLASMA-CLEANED USING REMARK 245 A GATAN SOLARUS (75% ARGON/25% REMARK 245 OXYGEN ATMOSPHERE, 15 W FOR 7S), REMARK 245 THEN MANUALLY BLOTTED WITH A REMARK 245 WHATMAN NO. 1 FILTER PAPER IN A REMARK 245 COLD ROOM WITH >80% HUMIDITY, REMARK 245 AND PLUNGED INTO LIQUID ETHANE REMARK 245 USING A MANUAL PLUNGER REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 652 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1.90 REMARK 245 MAXIMUM DEFOCUS (NM) : 3.50 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 36000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 LEU A -11 REMARK 465 GLU A -10 REMARK 465 VAL A -9 REMARK 465 LEU A -8 REMARK 465 PHE A -7 REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 VAL A 454 REMARK 465 ALA A 455 REMARK 465 ARG A 456 REMARK 465 ARG A 457 REMARK 465 ARG A 458 REMARK 465 GLN A 459 REMARK 465 ASP A 460 REMARK 465 SER A 461 REMARK 465 ARG A 462 REMARK 465 ARG A 463 REMARK 465 THR A 464 REMARK 465 ILE A 465 REMARK 465 ASN A 466 REMARK 465 PRO A 467 REMARK 465 ASP A 468 REMARK 465 THR A 469 REMARK 465 LEU A 470 REMARK 465 ILE A 471 REMARK 465 ARG A 472 REMARK 465 ASN A 473 REMARK 465 LEU A 474 REMARK 465 ALA A 475 REMARK 465 GLU A 476 REMARK 465 LEU A 477 REMARK 465 HIS A 478 REMARK 465 ALA A 1148 REMARK 465 DA B 2 REMARK 465 DT B 3 REMARK 465 DG B 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 GLN A 410 CG CD OE1 NE2 REMARK 470 VAL A 438 CG1 CG2 REMARK 470 GLU A 537 CG CD OE1 OE2 REMARK 470 GLU A 538 CG CD OE1 OE2 REMARK 470 LYS A 560 CG CD CE NZ REMARK 470 GLU A 567 CG CD OE1 OE2 REMARK 470 LYS A 743 CG CD CE NZ REMARK 470 ASN A 748 CG OD1 ND2 REMARK 470 GLU A 800 CG CD OE1 OE2 REMARK 470 VAL A 819 CG1 CG2 REMARK 470 GLU A 820 CG CD OE1 OE2 REMARK 470 GLU A 961 CG CD OE1 OE2 REMARK 470 SER A 993 OG REMARK 470 LEU A 994 CG CD1 CD2 REMARK 470 ASP A 996 CG OD1 OD2 REMARK 470 LEU A 997 CG CD1 CD2 REMARK 470 THR A 998 OG1 CG2 REMARK 470 SER A 999 OG REMARK 470 GLN A1000 CG CD OE1 NE2 REMARK 470 GLN A1001 CG CD OE1 NE2 REMARK 470 LYS A1072 CG CD CE NZ REMARK 470 LYS A1092 CG CD CE NZ REMARK 470 GLU A1127 CG CD OE1 OE2 REMARK 470 LYS A1129 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 DG B 5 H42 DC C 38 1.55 REMARK 500 O HIS A 120 H HIS A 124 1.56 REMARK 500 O ASP A 856 H GLN A 860 1.60 REMARK 500 OE1 GLN A 909 OH TYR A 911 2.02 REMARK 500 O PRO A 1056 OG1 THR A 1059 2.04 REMARK 500 O GLU A 1127 OG1 THR A 1130 2.05 REMARK 500 O PRO A 522 OG SER A 525 2.06 REMARK 500 OG SER A 688 OE1 GLU A 691 2.06 REMARK 500 OG SER A 137 OD1 ASP A 139 2.07 REMARK 500 OE1 GLU A 792 OG1 THR A 916 2.07 REMARK 500 OH TYR A 532 O GLY A 535 2.08 REMARK 500 O THR A 1022 OG SER A 1025 2.11 REMARK 500 O ALA A 140 OG1 THR A 143 2.11 REMARK 500 O LYS A 690 OG1 THR A 693 2.12 REMARK 500 O LEU A 713 OG SER A 716 2.13 REMARK 500 OH TYR A 78 O LEU A 315 2.14 REMARK 500 NE2 GLN A 230 O LEU A 263 2.16 REMARK 500 O LEU A 22 OG1 THR A 341 2.16 REMARK 500 O LEU A 145 N GLY A 149 2.16 REMARK 500 O ASP A 196 OG SER A 199 2.16 REMARK 500 O ILE A 1017 NH2 ARG A 1023 2.16 REMARK 500 O ILE A 87 OG SER A 90 2.17 REMARK 500 O GLY A 960 N SER A 964 2.17 REMARK 500 O ARG A 761 N MET A 765 2.18 REMARK 500 O VAL A 699 NZ LYS A 721 2.18 REMARK 500 OG1 THR A 601 NE2 GLN A 605 2.18 REMARK 500 NE2 GLN A 663 OD1 ASP A 667 2.18 REMARK 500 OH TYR A 666 O ILE A 680 2.18 REMARK 500 NH2 ARG A 761 O ASN A 764 2.18 REMARK 500 O MET A 765 OG SER A 768 2.19 REMARK 500 OG SER A 1010 OG1 THR A 1059 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 4 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT B 8 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT B 11 O3' - P - OP2 ANGL. DEV. = -15.4 DEGREES REMARK 500 DT B 11 O3' - P - OP1 ANGL. DEV. = -26.2 DEGREES REMARK 500 DT B 11 OP1 - P - OP2 ANGL. DEV. = 11.8 DEGREES REMARK 500 DC B 18 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 23 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 34 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 35 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC C 37 O3' - P - OP2 ANGL. DEV. = -17.6 DEGREES REMARK 500 DC C 37 O3' - P - OP1 ANGL. DEV. = -33.0 DEGREES REMARK 500 DC C 37 OP1 - P - OP2 ANGL. DEV. = 19.4 DEGREES REMARK 500 DC C 37 O5' - P - OP1 ANGL. DEV. = -39.1 DEGREES REMARK 500 DC C 37 O5' - P - OP2 ANGL. DEV. = -16.3 DEGREES REMARK 500 DC C 37 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DC C 37 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 38 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 37 50.10 -93.41 REMARK 500 PHE A 62 64.57 -103.23 REMARK 500 GLN A 65 -168.02 -78.42 REMARK 500 GLU A 74 -5.16 72.53 REMARK 500 TYR A 78 42.99 71.60 REMARK 500 MET A 174 -62.60 -95.11 REMARK 500 ASP A 183 44.07 72.26 REMARK 500 PHE A 185 88.08 -152.20 REMARK 500 ASP A 186 31.86 38.84 REMARK 500 ASP A 187 -8.40 74.63 REMARK 500 GLU A 188 50.84 -93.37 REMARK 500 LEU A 203 -56.60 -122.07 REMARK 500 LEU A 211 51.56 -93.66 REMARK 500 ALA A 214 42.34 -104.00 REMARK 500 LEU A 263 35.21 -95.03 REMARK 500 GLU A 267 105.62 -56.72 REMARK 500 PRO A 270 172.92 -53.48 REMARK 500 PRO A 271 -180.00 -59.82 REMARK 500 PRO A 345 172.11 -59.60 REMARK 500 PHE A 387 -169.93 -128.20 REMARK 500 LYS A 406 41.69 75.82 REMARK 500 ALA A 408 89.22 -150.35 REMARK 500 MET A 426 -171.73 -170.45 REMARK 500 LEU A 441 -169.79 -162.19 REMARK 500 LEU A 443 87.24 -152.31 REMARK 500 TYR A 513 -148.90 -148.54 REMARK 500 ALA A 514 131.48 -30.48 REMARK 500 LEU A 519 108.20 -51.54 REMARK 500 GLU A 538 15.83 -145.29 REMARK 500 LEU A 542 175.90 179.21 REMARK 500 ASP A 548 -167.49 -167.89 REMARK 500 ALA A 577 -77.32 -65.61 REMARK 500 LYS A 578 67.78 34.60 REMARK 500 PRO A 598 40.40 -88.92 REMARK 500 ASP A 623 135.96 -172.06 REMARK 500 PHE A 632 150.40 -45.71 REMARK 500 VAL A 646 -60.58 -104.98 REMARK 500 PHE A 673 50.15 -117.27 REMARK 500 ALA A 674 -63.79 -93.78 REMARK 500 ASN A 675 51.67 -91.11 REMARK 500 PRO A 677 77.32 -68.19 REMARK 500 SER A 684 -164.93 -125.38 REMARK 500 ASP A 717 95.20 -68.12 REMARK 500 LEU A 725 -169.29 -168.63 REMARK 500 GLU A 730 67.92 67.33 REMARK 500 PRO A 758 -174.73 -67.54 REMARK 500 PRO A 760 128.78 -35.37 REMARK 500 ARG A 761 7.40 -69.58 REMARK 500 ASP A 772 171.32 -57.08 REMARK 500 ILE A 775 31.98 -93.20 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 45 ALA A 46 148.54 REMARK 500 HIS A 126 ALA A 127 37.94 REMARK 500 ARG A 181 LEU A 182 -145.62 REMARK 500 THR A 202 LEU A 203 -148.65 REMARK 500 ARG A 414 LEU A 415 -148.55 REMARK 500 LYS A 518 LEU A 519 -148.00 REMARK 500 SER A 525 LEU A 526 -147.32 REMARK 500 GLU A 600 THR A 601 -142.01 REMARK 500 LEU A 713 LEU A 714 -137.81 REMARK 500 ILE A 776 ALA A 777 -147.74 REMARK 500 THR A 916 PRO A 917 145.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-22146 RELATED DB: EMDB REMARK 900 STRUCTURE OF MFD BOUND TO DSDNA DBREF 6XEO A 1 1148 UNP P30958 MFD_ECOLI 1 1148 DBREF 6XEO B 2 22 PDB 6XEO 6XEO 2 22 DBREF 6XEO C 22 39 PDB 6XEO 6XEO 22 39 SEQADV 6XEO HIS A -20 UNP P30958 EXPRESSION TAG SEQADV 6XEO HIS A -19 UNP P30958 EXPRESSION TAG SEQADV 6XEO HIS A -18 UNP P30958 EXPRESSION TAG SEQADV 6XEO HIS A -17 UNP P30958 EXPRESSION TAG SEQADV 6XEO HIS A -16 UNP P30958 EXPRESSION TAG SEQADV 6XEO HIS A -15 UNP P30958 EXPRESSION TAG SEQADV 6XEO SER A -14 UNP P30958 EXPRESSION TAG SEQADV 6XEO SER A -13 UNP P30958 EXPRESSION TAG SEQADV 6XEO GLY A -12 UNP P30958 EXPRESSION TAG SEQADV 6XEO LEU A -11 UNP P30958 EXPRESSION TAG SEQADV 6XEO GLU A -10 UNP P30958 EXPRESSION TAG SEQADV 6XEO VAL A -9 UNP P30958 EXPRESSION TAG SEQADV 6XEO LEU A -8 UNP P30958 EXPRESSION TAG SEQADV 6XEO PHE A -7 UNP P30958 EXPRESSION TAG SEQADV 6XEO GLN A -6 UNP P30958 EXPRESSION TAG SEQADV 6XEO GLY A -5 UNP P30958 EXPRESSION TAG SEQADV 6XEO PRO A -4 UNP P30958 EXPRESSION TAG SEQADV 6XEO HIS A -3 UNP P30958 EXPRESSION TAG SEQADV 6XEO MET A -2 UNP P30958 EXPRESSION TAG SEQADV 6XEO ALA A -1 UNP P30958 EXPRESSION TAG SEQADV 6XEO SER A 0 UNP P30958 EXPRESSION TAG SEQRES 1 A 1169 HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU VAL LEU SEQRES 2 A 1169 PHE GLN GLY PRO HIS MET ALA SER MET PRO GLU GLN TYR SEQRES 3 A 1169 ARG TYR THR LEU PRO VAL LYS ALA GLY GLU GLN ARG LEU SEQRES 4 A 1169 LEU GLY GLU LEU THR GLY ALA ALA CYS ALA THR LEU VAL SEQRES 5 A 1169 ALA GLU ILE ALA GLU ARG HIS ALA GLY PRO VAL VAL LEU SEQRES 6 A 1169 ILE ALA PRO ASP MET GLN ASN ALA LEU ARG LEU HIS ASP SEQRES 7 A 1169 GLU ILE SER GLN PHE THR ASP GLN MET VAL MET ASN LEU SEQRES 8 A 1169 ALA ASP TRP GLU THR LEU PRO TYR ASP SER PHE SER PRO SEQRES 9 A 1169 HIS GLN ASP ILE ILE SER SER ARG LEU SER THR LEU TYR SEQRES 10 A 1169 GLN LEU PRO THR MET GLN ARG GLY VAL LEU ILE VAL PRO SEQRES 11 A 1169 VAL ASN THR LEU MET GLN ARG VAL CYS PRO HIS SER PHE SEQRES 12 A 1169 LEU HIS GLY HIS ALA LEU VAL MET LYS LYS GLY GLN ARG SEQRES 13 A 1169 LEU SER ARG ASP ALA LEU ARG THR GLN LEU ASP SER ALA SEQRES 14 A 1169 GLY TYR ARG HIS VAL ASP GLN VAL MET GLU HIS GLY GLU SEQRES 15 A 1169 TYR ALA THR ARG GLY ALA LEU LEU ASP LEU PHE PRO MET SEQRES 16 A 1169 GLY SER GLU LEU PRO TYR ARG LEU ASP PHE PHE ASP ASP SEQRES 17 A 1169 GLU ILE ASP SER LEU ARG VAL PHE ASP VAL ASP SER GLN SEQRES 18 A 1169 ARG THR LEU GLU GLU VAL GLU ALA ILE ASN LEU LEU PRO SEQRES 19 A 1169 ALA HIS GLU PHE PRO THR ASP LYS ALA ALA ILE GLU LEU SEQRES 20 A 1169 PHE ARG SER GLN TRP ARG ASP THR PHE GLU VAL LYS ARG SEQRES 21 A 1169 ASP PRO GLU HIS ILE TYR GLN GLN VAL SER LYS GLY THR SEQRES 22 A 1169 LEU PRO ALA GLY ILE GLU TYR TRP GLN PRO LEU PHE PHE SEQRES 23 A 1169 SER GLU PRO LEU PRO PRO LEU PHE SER TYR PHE PRO ALA SEQRES 24 A 1169 ASN THR LEU LEU VAL ASN THR GLY ASP LEU GLU THR SER SEQRES 25 A 1169 ALA GLU ARG PHE GLN ALA ASP THR LEU ALA ARG PHE GLU SEQRES 26 A 1169 ASN ARG GLY VAL ASP PRO MET ARG PRO LEU LEU PRO PRO SEQRES 27 A 1169 GLN SER LEU TRP LEU ARG VAL ASP GLU LEU PHE SER GLU SEQRES 28 A 1169 LEU LYS ASN TRP PRO ARG VAL GLN LEU LYS THR GLU HIS SEQRES 29 A 1169 LEU PRO THR LYS ALA ALA ASN ALA ASN LEU GLY PHE GLN SEQRES 30 A 1169 LYS LEU PRO ASP LEU ALA VAL GLN ALA GLN GLN LYS ALA SEQRES 31 A 1169 PRO LEU ASP ALA LEU ARG LYS PHE LEU GLU THR PHE ASP SEQRES 32 A 1169 GLY PRO VAL VAL PHE SER VAL GLU SER GLU GLY ARG ARG SEQRES 33 A 1169 GLU ALA LEU GLY GLU LEU LEU ALA ARG ILE LYS ILE ALA SEQRES 34 A 1169 PRO GLN ARG ILE MET ARG LEU ASP GLU ALA SER ASP ARG SEQRES 35 A 1169 GLY ARG TYR LEU MET ILE GLY ALA ALA GLU HIS GLY PHE SEQRES 36 A 1169 VAL ASP THR VAL ARG ASN LEU ALA LEU ILE CYS GLU SER SEQRES 37 A 1169 ASP LEU LEU GLY GLU ARG VAL ALA ARG ARG ARG GLN ASP SEQRES 38 A 1169 SER ARG ARG THR ILE ASN PRO ASP THR LEU ILE ARG ASN SEQRES 39 A 1169 LEU ALA GLU LEU HIS ILE GLY GLN PRO VAL VAL HIS LEU SEQRES 40 A 1169 GLU HIS GLY VAL GLY ARG TYR ALA GLY MET THR THR LEU SEQRES 41 A 1169 GLU ALA GLY GLY ILE THR GLY GLU TYR LEU MET LEU THR SEQRES 42 A 1169 TYR ALA ASN ASP ALA LYS LEU TYR VAL PRO VAL SER SER SEQRES 43 A 1169 LEU HIS LEU ILE SER ARG TYR ALA GLY GLY ALA GLU GLU SEQRES 44 A 1169 ASN ALA PRO LEU HIS LYS LEU GLY GLY ASP ALA TRP SER SEQRES 45 A 1169 ARG ALA ARG GLN LYS ALA ALA GLU LYS VAL ARG ASP VAL SEQRES 46 A 1169 ALA ALA GLU LEU LEU ASP ILE TYR ALA GLN ARG ALA ALA SEQRES 47 A 1169 LYS GLU GLY PHE ALA PHE LYS HIS ASP ARG GLU GLN TYR SEQRES 48 A 1169 GLN LEU PHE CYS ASP SER PHE PRO PHE GLU THR THR PRO SEQRES 49 A 1169 ASP GLN ALA GLN ALA ILE ASN ALA VAL LEU SER ASP MET SEQRES 50 A 1169 CYS GLN PRO LEU ALA MET ASP ARG LEU VAL CYS GLY ASP SEQRES 51 A 1169 VAL GLY PHE GLY LYS THR GLU VAL ALA MET ARG ALA ALA SEQRES 52 A 1169 PHE LEU ALA VAL ASP ASN HIS LYS GLN VAL ALA VAL LEU SEQRES 53 A 1169 VAL PRO THR THR LEU LEU ALA GLN GLN HIS TYR ASP ASN SEQRES 54 A 1169 PHE ARG ASP ARG PHE ALA ASN TRP PRO VAL ARG ILE GLU SEQRES 55 A 1169 MET ILE SER ARG PHE ARG SER ALA LYS GLU GLN THR GLN SEQRES 56 A 1169 ILE LEU ALA GLU VAL ALA GLU GLY LYS ILE ASP ILE LEU SEQRES 57 A 1169 ILE GLY THR HIS LYS LEU LEU GLN SER ASP VAL LYS PHE SEQRES 58 A 1169 LYS ASP LEU GLY LEU LEU ILE VAL ASP GLU GLU HIS ARG SEQRES 59 A 1169 PHE GLY VAL ARG HIS LYS GLU ARG ILE LYS ALA MET ARG SEQRES 60 A 1169 ALA ASN VAL ASP ILE LEU THR LEU THR ALA THR PRO ILE SEQRES 61 A 1169 PRO ARG THR LEU ASN MET ALA MET SER GLY MET ARG ASP SEQRES 62 A 1169 LEU SER ILE ILE ALA THR PRO PRO ALA ARG ARG LEU ALA SEQRES 63 A 1169 VAL LYS THR PHE VAL ARG GLU TYR ASP SER MET VAL VAL SEQRES 64 A 1169 ARG GLU ALA ILE LEU ARG GLU ILE LEU ARG GLY GLY GLN SEQRES 65 A 1169 VAL TYR TYR LEU TYR ASN ASP VAL GLU ASN ILE GLN LYS SEQRES 66 A 1169 ALA ALA GLU ARG LEU ALA GLU LEU VAL PRO GLU ALA ARG SEQRES 67 A 1169 ILE ALA ILE GLY HIS GLY GLN MET ARG GLU ARG GLU LEU SEQRES 68 A 1169 GLU ARG VAL MET ASN ASP PHE HIS HIS GLN ARG PHE ASN SEQRES 69 A 1169 VAL LEU VAL CYS THR THR ILE ILE GLU THR GLY ILE ASP SEQRES 70 A 1169 ILE PRO THR ALA ASN THR ILE ILE ILE GLU ARG ALA ASP SEQRES 71 A 1169 HIS PHE GLY LEU ALA GLN LEU HIS GLN LEU ARG GLY ARG SEQRES 72 A 1169 VAL GLY ARG SER HIS HIS GLN ALA TYR ALA TRP LEU LEU SEQRES 73 A 1169 THR PRO HIS PRO LYS ALA MET THR THR ASP ALA GLN LYS SEQRES 74 A 1169 ARG LEU GLU ALA ILE ALA SER LEU GLU ASP LEU GLY ALA SEQRES 75 A 1169 GLY PHE ALA LEU ALA THR HIS ASP LEU GLU ILE ARG GLY SEQRES 76 A 1169 ALA GLY GLU LEU LEU GLY GLU GLU GLN SER GLY SER MET SEQRES 77 A 1169 GLU THR ILE GLY PHE SER LEU TYR MET GLU LEU LEU GLU SEQRES 78 A 1169 ASN ALA VAL ASP ALA LEU LYS ALA GLY ARG GLU PRO SER SEQRES 79 A 1169 LEU GLU ASP LEU THR SER GLN GLN THR GLU VAL GLU LEU SEQRES 80 A 1169 ARG MET PRO SER LEU LEU PRO ASP ASP PHE ILE PRO ASP SEQRES 81 A 1169 VAL ASN THR ARG LEU SER PHE TYR LYS ARG ILE ALA SER SEQRES 82 A 1169 ALA LYS THR GLU ASN GLU LEU GLU GLU ILE LYS VAL GLU SEQRES 83 A 1169 LEU ILE ASP ARG PHE GLY LEU LEU PRO ASP PRO ALA ARG SEQRES 84 A 1169 THR LEU LEU ASP ILE ALA ARG LEU ARG GLN GLN ALA GLN SEQRES 85 A 1169 LYS LEU GLY ILE ARG LYS LEU GLU GLY ASN GLU LYS GLY SEQRES 86 A 1169 GLY VAL ILE GLU PHE ALA GLU LYS ASN HIS VAL ASN PRO SEQRES 87 A 1169 ALA TRP LEU ILE GLY LEU LEU GLN LYS GLN PRO GLN HIS SEQRES 88 A 1169 TYR ARG LEU ASP GLY PRO THR ARG LEU LYS PHE ILE GLN SEQRES 89 A 1169 ASP LEU SER GLU ARG LYS THR ARG ILE GLU TRP VAL ARG SEQRES 90 A 1169 GLN PHE MET ARG GLU LEU GLU GLU ASN ALA ILE ALA SEQRES 1 B 21 DA DT DA DG DG DA DT DA DC DT DT DA DC SEQRES 2 B 21 DA DG DC DC DA DT DC DG SEQRES 1 C 18 DG DA DT DG DG DC DT DG DT DA DA DG DT SEQRES 2 C 18 DA DT DC DC DT HELIX 1 AA1 GLY A 24 ARG A 37 1 14 HELIX 2 AA2 ASP A 48 PHE A 62 1 15 HELIX 3 AA3 HIS A 84 TYR A 96 1 13 HELIX 4 AA4 PRO A 109 GLN A 115 1 7 HELIX 5 AA5 HIS A 120 GLY A 125 1 6 HELIX 6 AA6 SER A 137 GLY A 149 1 13 HELIX 7 AA7 ASP A 220 PHE A 235 1 16 HELIX 8 AA8 HIS A 243 LYS A 250 1 8 HELIX 9 AA9 ALA A 255 PHE A 264 5 10 HELIX 10 AB1 PRO A 271 TYR A 275 5 5 HELIX 11 AB2 ASP A 287 GLY A 307 1 21 HELIX 12 AB3 PRO A 316 TRP A 321 1 6 HELIX 13 AB4 ARG A 323 LYS A 332 1 10 HELIX 14 AB5 LEU A 371 GLU A 379 1 9 HELIX 15 AB6 SER A 391 LEU A 401 1 11 HELIX 16 AB7 CYS A 445 GLY A 451 1 7 HELIX 17 AB8 TYR A 513 ALA A 517 5 5 HELIX 18 AB9 PRO A 522 HIS A 527 5 6 HELIX 19 AC1 ASP A 548 ARG A 575 1 28 HELIX 20 AC2 ASP A 586 ASP A 595 1 10 HELIX 21 AC3 THR A 602 GLN A 618 1 17 HELIX 22 AC4 GLU A 636 ALA A 638 5 3 HELIX 23 AC5 MET A 639 ASN A 648 1 10 HELIX 24 AC6 THR A 659 PHE A 673 1 15 HELIX 25 AC7 SER A 688 GLY A 702 1 15 HELIX 26 AC8 VAL A 736 ALA A 744 1 9 HELIX 27 AC9 ARG A 761 ARG A 771 1 11 HELIX 28 AD1 ASP A 794 ILE A 806 1 13 HELIX 29 AD2 ASN A 821 VAL A 833 1 13 HELIX 30 AD3 ARG A 846 GLN A 860 1 15 HELIX 31 AD4 GLY A 892 ARG A 900 1 9 HELIX 32 AD5 THR A 923 SER A 935 1 13 HELIX 33 AD6 GLY A 942 GLY A 954 1 13 HELIX 34 AD7 GLY A 960 GLY A 971 1 12 HELIX 35 AD8 GLY A 971 GLY A 989 1 19 HELIX 36 AD9 ASP A 1019 ALA A 1033 1 15 HELIX 37 AE1 THR A 1035 PHE A 1050 1 16 HELIX 38 AE2 PRO A 1054 GLY A 1074 1 21 HELIX 39 AE3 PRO A 1097 GLN A 1107 1 11 HELIX 40 AE4 GLU A 1127 ASN A 1145 1 19 SHEET 1 AA1 2 VAL A 129 MET A 130 0 SHEET 2 AA1 2 ILE A 209 ASN A 210 -1 O ILE A 209 N MET A 130 SHEET 1 AA2 2 ALA A 163 ARG A 165 0 SHEET 2 AA2 2 LEU A 168 ASP A 170 -1 O LEU A 168 N ARG A 165 SHEET 1 AA3 3 TYR A 180 ARG A 181 0 SHEET 2 AA3 3 ARG A 193 ASP A 196 -1 O ARG A 193 N ARG A 181 SHEET 3 AA3 3 ARG A 201 GLU A 205 -1 O LEU A 203 N VAL A 194 SHEET 1 AA4 2 LEU A 282 VAL A 283 0 SHEET 2 AA4 2 ARG A 336 VAL A 337 1 O VAL A 337 N LEU A 282 SHEET 1 AA5 2 PHE A 355 LYS A 357 0 SHEET 2 AA5 2 PHE A 434 ASP A 436 -1 O VAL A 435 N GLN A 356 SHEET 1 AA6 5 TYR A 520 VAL A 521 0 SHEET 2 AA6 5 THR A 505 THR A 512 -1 N LEU A 509 O VAL A 521 SHEET 3 AA6 5 GLY A 489 GLU A 500 -1 N LEU A 499 O GLY A 506 SHEET 4 AA6 5 PRO A 482 HIS A 485 -1 N HIS A 485 O GLY A 489 SHEET 5 AA6 5 ILE A 529 ARG A 531 -1 O SER A 530 N VAL A 484 SHEET 1 AA7 2 VAL A 652 VAL A 654 0 SHEET 2 AA7 2 ILE A 706 ILE A 708 1 O LEU A 707 N VAL A 654 SHEET 1 AA8 2 VAL A 786 THR A 788 0 SHEET 2 AA8 2 ALA A 910 ALA A 912 1 O ALA A 912 N LYS A 787 SHEET 1 AA9 4 LYS A1077 ASN A1081 0 SHEET 2 AA9 4 GLY A1084 GLU A1088 -1 O VAL A1086 N GLU A1079 SHEET 3 AA9 4 ARG A1118 PHE A1121 -1 O PHE A1121 N GLY A1085 SHEET 4 AA9 4 ARG A1112 ASP A1114 -1 N ARG A1112 O LYS A1120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000