HEADER TRANSFERASE 19-JUN-20 6XHQ TITLE CRYSTAL STRUCTURE OF S. AUREUS TARI IN COMPLEX WITH CDP-RIBITOL (SPACE TITLE 2 GROUP C121) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.40; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: TARI, SAOUHSC_00225; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYTIDYLYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.K.K.LI,N.C.J.STRYNADKA REVDAT 3 18-OCT-23 6XHQ 1 REMARK REVDAT 2 28-APR-21 6XHQ 1 JRNL REVDAT 1 21-APR-21 6XHQ 0 JRNL AUTH F.K.K.LI,R.T.GALE,E.V.PETROTCHENKO,C.H.BORCHERS,E.D.BROWN, JRNL AUTH 2 N.C.J.STRYNADKA JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF TARI AND TARJ, A JRNL TITL 2 CYTIDYLYLTRANSFERASE AND REDUCTASE PAIR FOR CDP-RIBITOL JRNL TITL 3 SYNTHESIS IN STAPHYLOCOCCUS AUREUS WALL TEICHOIC ACID JRNL TITL 4 BIOGENESIS. JRNL REF J.STRUCT.BIOL. V. 213 07733 2021 JRNL REFN ESSN 1095-8657 JRNL PMID 33819634 JRNL DOI 10.1016/J.JSB.2021.107733 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4750 - 4.5899 1.00 2877 152 0.1530 0.1989 REMARK 3 2 4.5899 - 3.6436 0.99 2774 146 0.1547 0.1931 REMARK 3 3 3.6436 - 3.1831 0.99 2744 144 0.1940 0.2487 REMARK 3 4 3.1831 - 2.8921 1.00 2755 145 0.2325 0.2618 REMARK 3 5 2.8921 - 2.6848 0.99 2728 144 0.2697 0.3371 REMARK 3 6 2.6848 - 2.5266 0.99 2726 144 0.2839 0.3873 REMARK 3 7 2.5266 - 2.4000 0.99 2689 142 0.3024 0.3260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0311 14.1410 12.5988 REMARK 3 T TENSOR REMARK 3 T11: 0.5308 T22: 0.4551 REMARK 3 T33: 1.0037 T12: -0.0150 REMARK 3 T13: -0.0814 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.5635 L22: 2.4999 REMARK 3 L33: 4.7627 L12: -0.4426 REMARK 3 L13: -1.5568 L23: -2.3452 REMARK 3 S TENSOR REMARK 3 S11: 0.1633 S12: 0.1580 S13: 1.5171 REMARK 3 S21: 0.8931 S22: -0.1534 S23: 0.2733 REMARK 3 S31: -0.9645 S32: 0.6780 S33: 0.0961 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1939 7.9334 4.3068 REMARK 3 T TENSOR REMARK 3 T11: 0.4921 T22: 0.3133 REMARK 3 T33: 0.5734 T12: 0.0520 REMARK 3 T13: 0.0108 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 7.1886 L22: 1.4902 REMARK 3 L33: 7.8205 L12: 1.3785 REMARK 3 L13: -1.4799 L23: -2.1561 REMARK 3 S TENSOR REMARK 3 S11: 0.2013 S12: 0.2913 S13: 0.8438 REMARK 3 S21: -0.2109 S22: -0.2661 S23: -0.2735 REMARK 3 S31: -0.4550 S32: 0.2145 S33: 0.0719 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1799 3.8158 13.3411 REMARK 3 T TENSOR REMARK 3 T11: 0.3760 T22: 0.2777 REMARK 3 T33: 0.4911 T12: 0.0219 REMARK 3 T13: -0.0109 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.1144 L22: 1.5557 REMARK 3 L33: 3.0647 L12: -0.9037 REMARK 3 L13: 0.2471 L23: -0.6406 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.1412 S13: -0.0475 REMARK 3 S21: -0.0400 S22: 0.0796 S23: 0.2676 REMARK 3 S31: 0.0956 S32: -0.0574 S33: -0.0465 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6281 -1.1134 26.6629 REMARK 3 T TENSOR REMARK 3 T11: 0.3903 T22: 0.4112 REMARK 3 T33: 0.4520 T12: 0.0611 REMARK 3 T13: 0.0103 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 4.6020 L22: 1.7183 REMARK 3 L33: 2.6425 L12: -1.5711 REMARK 3 L13: -0.0603 L23: -0.5244 REMARK 3 S TENSOR REMARK 3 S11: -0.3069 S12: -1.0248 S13: -0.1617 REMARK 3 S21: 0.2829 S22: 0.2968 S23: 0.0628 REMARK 3 S31: 0.0881 S32: 0.1207 S33: 0.0113 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6171 2.6884 7.1606 REMARK 3 T TENSOR REMARK 3 T11: 0.4352 T22: 0.5460 REMARK 3 T33: 0.6033 T12: -0.0057 REMARK 3 T13: 0.0476 T23: 0.0959 REMARK 3 L TENSOR REMARK 3 L11: 7.5699 L22: 9.7712 REMARK 3 L33: 2.4906 L12: 1.3783 REMARK 3 L13: 1.8002 L23: 3.6090 REMARK 3 S TENSOR REMARK 3 S11: -0.3977 S12: 0.3745 S13: 0.6069 REMARK 3 S21: -0.7622 S22: 0.4401 S23: 0.1116 REMARK 3 S31: 0.2444 S32: 0.7152 S33: 0.1389 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9216 -9.6551 17.7972 REMARK 3 T TENSOR REMARK 3 T11: 0.4192 T22: 0.6738 REMARK 3 T33: 0.5111 T12: 0.2142 REMARK 3 T13: 0.0955 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 9.1384 L22: 4.2592 REMARK 3 L33: 3.5760 L12: -0.0130 REMARK 3 L13: 2.4225 L23: -2.7726 REMARK 3 S TENSOR REMARK 3 S11: -0.1395 S12: -0.5094 S13: -0.1597 REMARK 3 S21: -0.4287 S22: 0.2300 S23: -0.2144 REMARK 3 S31: 0.7679 S32: 0.5348 S33: -0.1701 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0365 -10.5104 23.7278 REMARK 3 T TENSOR REMARK 3 T11: 0.4670 T22: 1.1077 REMARK 3 T33: 0.7192 T12: 0.1858 REMARK 3 T13: 0.0261 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 5.5156 L22: 2.9627 REMARK 3 L33: 3.0838 L12: -0.7411 REMARK 3 L13: -0.2232 L23: -1.0217 REMARK 3 S TENSOR REMARK 3 S11: -0.1153 S12: -1.1697 S13: 0.0445 REMARK 3 S21: 0.1550 S22: 0.1351 S23: -0.5278 REMARK 3 S31: 0.2506 S32: 1.1823 S33: -0.0692 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3606 -2.7270 32.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.5030 T22: 0.9498 REMARK 3 T33: 0.5574 T12: 0.2041 REMARK 3 T13: -0.0779 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 2.0369 L22: 1.7796 REMARK 3 L33: 2.2312 L12: -1.3010 REMARK 3 L13: -0.6241 L23: -0.1708 REMARK 3 S TENSOR REMARK 3 S11: -0.3356 S12: -1.2918 S13: 0.1706 REMARK 3 S21: 0.4941 S22: 0.3947 S23: -0.4161 REMARK 3 S31: 0.1259 S32: 0.8219 S33: -0.0689 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2039 -5.1675 26.6310 REMARK 3 T TENSOR REMARK 3 T11: 0.3253 T22: 0.7010 REMARK 3 T33: 0.5102 T12: 0.1221 REMARK 3 T13: -0.0158 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 3.7080 L22: 3.0663 REMARK 3 L33: 6.4909 L12: -1.7734 REMARK 3 L13: -1.0823 L23: -0.1698 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.5739 S13: -0.0285 REMARK 3 S21: 0.1406 S22: 0.3011 S23: 0.1115 REMARK 3 S31: 0.3200 S32: 0.4803 S33: -0.3363 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 11 OR RESID REMARK 3 19 THROUGH 47 OR (RESID 48 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 49 THROUGH 54 OR (RESID 55 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 56 THROUGH 68 OR REMARK 3 (RESID 69 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 70 REMARK 3 THROUGH 122 OR (RESID 123 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 124 THROUGH 177 OR (RESID 178 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 179 THROUGH 186 REMARK 3 OR (RESID 187 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 188 OR (RESID 189 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 190 THROUGH 203 OR (RESID 204 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 205 THROUGH 235)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 21 OR REMARK 3 (RESID 22 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 23 REMARK 3 THROUGH 235)) REMARK 3 ATOM PAIRS NUMBER : 1370 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20322 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.475 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIB BUFFER, PH 9, 25% PEG1500, 5 REMARK 280 MM CDP-RIBITOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.46750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.02850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.46750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.02850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 SER A 241 REMARK 465 LEU A 242 REMARK 465 VAL A 243 REMARK 465 PRO A 244 REMARK 465 ARG A 245 REMARK 465 GLY A 246 REMARK 465 SER A 247 REMARK 465 ALA A 248 REMARK 465 ALA A 249 REMARK 465 ALA A 250 REMARK 465 ALA A 251 REMARK 465 LEU A 252 REMARK 465 GLU A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 ARG B 14 REMARK 465 MET B 15 REMARK 465 GLY B 16 REMARK 465 ASN B 17 REMARK 465 VAL B 18 REMARK 465 ALA B 236 REMARK 465 ASP B 237 REMARK 465 ASP B 238 REMARK 465 GLY B 239 REMARK 465 GLY B 240 REMARK 465 SER B 241 REMARK 465 LEU B 242 REMARK 465 VAL B 243 REMARK 465 PRO B 244 REMARK 465 ARG B 245 REMARK 465 GLY B 246 REMARK 465 SER B 247 REMARK 465 ALA B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ALA B 251 REMARK 465 LEU B 252 REMARK 465 GLU B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLN B 55 CG CD OE1 NE2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 ARG B 232 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 19 174.49 -58.30 REMARK 500 ARG A 114 79.56 -115.28 REMARK 500 ASN A 151 18.01 58.04 REMARK 500 GLN A 152 -62.23 -122.24 REMARK 500 GLN A 167 -159.74 -111.71 REMARK 500 ALA A 236 48.57 -93.70 REMARK 500 ARG B 114 79.32 -115.57 REMARK 500 ASN B 151 16.55 58.74 REMARK 500 GLN B 152 -59.85 -126.06 REMARK 500 GLN B 167 -159.39 -112.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V2V A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V2V B 301 DBREF 6XHQ A 1 238 UNP Q2G1C0 TARI1_STAA8 1 238 DBREF 6XHQ B 1 238 UNP Q2G1C0 TARI1_STAA8 1 238 SEQADV 6XHQ GLY A 239 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ GLY A 240 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ SER A 241 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ LEU A 242 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ VAL A 243 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ PRO A 244 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ARG A 245 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ GLY A 246 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ SER A 247 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ALA A 248 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ALA A 249 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ALA A 250 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ALA A 251 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ LEU A 252 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ GLU A 253 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS A 254 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS A 255 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS A 256 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS A 257 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS A 258 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS A 259 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS A 260 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS A 261 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ GLY B 239 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ GLY B 240 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ SER B 241 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ LEU B 242 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ VAL B 243 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ PRO B 244 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ARG B 245 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ GLY B 246 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ SER B 247 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ALA B 248 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ALA B 249 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ALA B 250 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ ALA B 251 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ LEU B 252 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ GLU B 253 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS B 254 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS B 255 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS B 256 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS B 257 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS B 258 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS B 259 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS B 260 UNP Q2G1C0 EXPRESSION TAG SEQADV 6XHQ HIS B 261 UNP Q2G1C0 EXPRESSION TAG SEQRES 1 A 261 MET LYS TYR ALA GLY ILE LEU ALA GLY GLY ILE GLY SER SEQRES 2 A 261 ARG MET GLY ASN VAL PRO LEU PRO LYS GLN PHE LEU ASP SEQRES 3 A 261 LEU ASP ASN LYS PRO ILE LEU ILE HIS THR LEU GLU LYS SEQRES 4 A 261 PHE ILE LEU ILE ASN ASP PHE GLU LYS ILE ILE ILE ALA SEQRES 5 A 261 THR PRO GLN GLN TRP MET THR HIS THR LYS ASP THR LEU SEQRES 6 A 261 ARG LYS PHE LYS ILE SER ASP GLU ARG ILE GLU VAL ILE SEQRES 7 A 261 GLN GLY GLY SER ASP ARG ASN ASP THR ILE MET ASN ILE SEQRES 8 A 261 VAL LYS HIS ILE GLU SER THR ASN GLY ILE ASN ASP ASP SEQRES 9 A 261 ASP VAL ILE VAL THR HIS ASP ALA VAL ARG PRO PHE LEU SEQRES 10 A 261 THR HIS ARG ILE ILE LYS GLU ASN ILE GLN ALA ALA LEU SEQRES 11 A 261 GLU TYR GLY ALA VAL ASP THR VAL ILE ASP ALA ILE ASP SEQRES 12 A 261 THR ILE VAL THR SER LYS ASP ASN GLN THR ILE ASP ALA SEQRES 13 A 261 ILE PRO VAL ARG ASN GLU MET TYR GLN GLY GLN THR PRO SEQRES 14 A 261 GLN SER PHE ASN ILE ASN LEU LEU LYS GLU SER TYR ALA SEQRES 15 A 261 GLN LEU SER ASP GLU GLN LYS SER ILE LEU SER ASP ALA SEQRES 16 A 261 CYS LYS ILE ILE VAL GLU THR ASN LYS PRO VAL ARG LEU SEQRES 17 A 261 VAL LYS GLY GLU LEU TYR ASN ILE LYS VAL THR THR PRO SEQRES 18 A 261 TYR ASP LEU LYS VAL ALA ASN ALA ILE ILE ARG GLY GLY SEQRES 19 A 261 ILE ALA ASP ASP GLY GLY SER LEU VAL PRO ARG GLY SER SEQRES 20 A 261 ALA ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HIS SEQRES 21 A 261 HIS SEQRES 1 B 261 MET LYS TYR ALA GLY ILE LEU ALA GLY GLY ILE GLY SER SEQRES 2 B 261 ARG MET GLY ASN VAL PRO LEU PRO LYS GLN PHE LEU ASP SEQRES 3 B 261 LEU ASP ASN LYS PRO ILE LEU ILE HIS THR LEU GLU LYS SEQRES 4 B 261 PHE ILE LEU ILE ASN ASP PHE GLU LYS ILE ILE ILE ALA SEQRES 5 B 261 THR PRO GLN GLN TRP MET THR HIS THR LYS ASP THR LEU SEQRES 6 B 261 ARG LYS PHE LYS ILE SER ASP GLU ARG ILE GLU VAL ILE SEQRES 7 B 261 GLN GLY GLY SER ASP ARG ASN ASP THR ILE MET ASN ILE SEQRES 8 B 261 VAL LYS HIS ILE GLU SER THR ASN GLY ILE ASN ASP ASP SEQRES 9 B 261 ASP VAL ILE VAL THR HIS ASP ALA VAL ARG PRO PHE LEU SEQRES 10 B 261 THR HIS ARG ILE ILE LYS GLU ASN ILE GLN ALA ALA LEU SEQRES 11 B 261 GLU TYR GLY ALA VAL ASP THR VAL ILE ASP ALA ILE ASP SEQRES 12 B 261 THR ILE VAL THR SER LYS ASP ASN GLN THR ILE ASP ALA SEQRES 13 B 261 ILE PRO VAL ARG ASN GLU MET TYR GLN GLY GLN THR PRO SEQRES 14 B 261 GLN SER PHE ASN ILE ASN LEU LEU LYS GLU SER TYR ALA SEQRES 15 B 261 GLN LEU SER ASP GLU GLN LYS SER ILE LEU SER ASP ALA SEQRES 16 B 261 CYS LYS ILE ILE VAL GLU THR ASN LYS PRO VAL ARG LEU SEQRES 17 B 261 VAL LYS GLY GLU LEU TYR ASN ILE LYS VAL THR THR PRO SEQRES 18 B 261 TYR ASP LEU LYS VAL ALA ASN ALA ILE ILE ARG GLY GLY SEQRES 19 B 261 ILE ALA ASP ASP GLY GLY SER LEU VAL PRO ARG GLY SER SEQRES 20 B 261 ALA ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HIS SEQRES 21 B 261 HIS HET V2V A 301 34 HET V2V B 301 34 HETNAM V2V CDP-RIBITOL HETSYN V2V [(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-3,4- HETSYN 2 V2V DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3S,4S)-2,3,4, HETSYN 3 V2V 5-TETRAHYDROXYPENTYL DIHYDROGEN DIPHOSPHATE FORMUL 3 V2V 2(C14 H25 N3 O15 P2) FORMUL 5 HOH *132(H2 O) HELIX 1 AA1 PRO A 21 LEU A 25 5 5 HELIX 2 AA2 PRO A 31 LEU A 42 1 12 HELIX 3 AA3 PRO A 54 GLN A 56 5 3 HELIX 4 AA4 TRP A 57 PHE A 68 1 12 HELIX 5 AA5 ASP A 83 ASN A 99 1 17 HELIX 6 AA6 THR A 118 GLY A 133 1 16 HELIX 7 AA7 VAL A 159 ASN A 161 5 3 HELIX 8 AA8 ILE A 174 LEU A 184 1 11 HELIX 9 AA9 SER A 185 LEU A 192 1 8 HELIX 10 AB1 ALA A 195 THR A 202 1 8 HELIX 11 AB2 THR A 220 GLY A 233 1 14 HELIX 12 AB3 PRO B 21 LEU B 25 5 5 HELIX 13 AB4 PRO B 31 LEU B 42 1 12 HELIX 14 AB5 PRO B 54 GLN B 56 5 3 HELIX 15 AB6 TRP B 57 PHE B 68 1 12 HELIX 16 AB7 ASP B 83 GLY B 100 1 18 HELIX 17 AB8 THR B 118 GLY B 133 1 16 HELIX 18 AB9 VAL B 159 ASN B 161 5 3 HELIX 19 AC1 ILE B 174 LEU B 184 1 11 HELIX 20 AC2 SER B 185 ILE B 191 1 7 HELIX 21 AC3 ALA B 195 THR B 202 1 8 HELIX 22 AC4 THR B 220 GLY B 233 1 14 SHEET 1 AA1 7 ILE A 75 GLN A 79 0 SHEET 2 AA1 7 PHE A 46 THR A 53 1 N ILE A 51 O GLU A 76 SHEET 3 AA1 7 LYS A 2 LEU A 7 1 N ALA A 4 O ILE A 50 SHEET 4 AA1 7 VAL A 106 ASP A 111 1 O VAL A 108 N TYR A 3 SHEET 5 AA1 7 MET A 163 ASN A 173 -1 O GLN A 170 N THR A 109 SHEET 6 AA1 7 ALA A 134 ASP A 140 -1 N THR A 137 O GLN A 167 SHEET 7 AA1 7 ARG A 207 LYS A 210 1 O VAL A 209 N ASP A 136 SHEET 1 AA2 6 ILE A 75 GLN A 79 0 SHEET 2 AA2 6 PHE A 46 THR A 53 1 N ILE A 51 O GLU A 76 SHEET 3 AA2 6 LYS A 2 LEU A 7 1 N ALA A 4 O ILE A 50 SHEET 4 AA2 6 VAL A 106 ASP A 111 1 O VAL A 108 N TYR A 3 SHEET 5 AA2 6 MET A 163 ASN A 173 -1 O GLN A 170 N THR A 109 SHEET 6 AA2 6 ILE B 145 THR B 147 -1 O VAL B 146 N TYR A 164 SHEET 1 AA3 6 ILE A 145 THR A 147 0 SHEET 2 AA3 6 MET B 163 ASN B 173 -1 O TYR B 164 N VAL A 146 SHEET 3 AA3 6 VAL B 106 ASP B 111 -1 N THR B 109 O GLN B 170 SHEET 4 AA3 6 LYS B 2 LEU B 7 1 N TYR B 3 O VAL B 108 SHEET 5 AA3 6 PHE B 46 THR B 53 1 O GLU B 47 N LYS B 2 SHEET 6 AA3 6 ILE B 75 GLN B 79 1 O GLU B 76 N ILE B 51 SHEET 1 AA4 4 ILE A 145 THR A 147 0 SHEET 2 AA4 4 MET B 163 ASN B 173 -1 O TYR B 164 N VAL A 146 SHEET 3 AA4 4 ALA B 134 ASP B 140 -1 N THR B 137 O GLN B 167 SHEET 4 AA4 4 ARG B 207 LYS B 210 1 O VAL B 209 N ASP B 136 CISPEP 1 THR A 168 PRO A 169 0 9.36 CISPEP 2 THR B 168 PRO B 169 0 9.32 SITE 1 AC1 27 LEU A 7 ALA A 8 GLY A 9 GLY A 10 SITE 2 AC1 27 GLN A 23 GLY A 81 SER A 82 ASP A 83 SITE 3 AC1 27 ARG A 84 THR A 87 ASP A 111 ALA A 112 SITE 4 AC1 27 VAL A 113 ARG A 114 GLY A 166 GLN A 167 SITE 5 AC1 27 GLN A 170 SER A 193 LYS A 217 THR A 219 SITE 6 AC1 27 HOH A 419 HOH A 420 HOH A 463 HOH A 465 SITE 7 AC1 27 ASP B 143 THR B 144 ARG B 160 SITE 1 AC2 24 ASP A 143 THR A 144 ARG A 160 LEU B 7 SITE 2 AC2 24 ALA B 8 GLY B 9 GLY B 10 GLY B 81 SITE 3 AC2 24 SER B 82 ASP B 83 ARG B 84 THR B 87 SITE 4 AC2 24 ASP B 111 ALA B 112 VAL B 113 ARG B 114 SITE 5 AC2 24 GLY B 166 GLN B 167 THR B 168 GLN B 170 SITE 6 AC2 24 SER B 193 LYS B 217 THR B 219 HOH B 419 CRYST1 148.935 40.057 91.823 90.00 109.26 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006714 0.000000 0.002346 0.00000 SCALE2 0.000000 0.024964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011536 0.00000