HEADER SIGNALING PROTEIN 22-JUN-20 6XIY TITLE CRYSTAL STRUCTURE OF THE CARBOHYDRATE RECOGNITION DOMAIN OF THE HUMAN TITLE 2 MACROPHAGE GALACTOSE C-TYPE LECTIN BOUND TO METHYL 2-(ACETYLAMINO)-2- TITLE 3 DEOXY-1-THIO-ALPHA-D-GALACTOPYRANOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE LECTIN DOMAIN FAMILY 10 MEMBER A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-TYPE LECTIN SUPERFAMILY MEMBER 14,MACROPHAGE LECTIN 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLEC10A, CLECSF13, CLECSF14, HML; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRD, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.BIRRANE,P.V.MURPHY,A.GABBA,J.G.LUZ REVDAT 3 18-OCT-23 6XIY 1 REMARK REVDAT 2 19-MAY-21 6XIY 1 JRNL REVDAT 1 31-MAR-21 6XIY 0 JRNL AUTH A.GABBA,A.BOGUCKA,J.G.LUZ,A.DINIZ,H.COELHO,F.CORZANA, JRNL AUTH 2 F.J.CANADA,F.MARCELO,P.V.MURPHY,G.BIRRANE JRNL TITL CRYSTAL STRUCTURE OF THE CARBOHYDRATE RECOGNITION DOMAIN OF JRNL TITL 2 THE HUMAN MACROPHAGE GALACTOSE C-TYPE LECTIN BOUND TO GALNAC JRNL TITL 3 AND THE TUMOR-ASSOCIATED TN ANTIGEN. JRNL REF BIOCHEMISTRY V. 60 1327 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 33724805 JRNL DOI 10.1021/ACS.BIOCHEM.1C00009 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 8348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.709 REMARK 3 FREE R VALUE TEST SET COUNT : 894 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01600 REMARK 3 B22 (A**2) : 0.01600 REMARK 3 B33 (A**2) : -0.05100 REMARK 3 B12 (A**2) : 0.00800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.256 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.192 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1162 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 907 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1566 ; 1.543 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2124 ; 1.332 ; 1.610 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 138 ;11.991 ; 5.072 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;37.179 ;24.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 157 ;16.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;10.862 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 129 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1438 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 265 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 208 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 15 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 521 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 59 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.126 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 531 ; 4.508 ; 3.423 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 527 ; 4.452 ; 3.417 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 657 ; 5.186 ; 5.124 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 658 ; 5.182 ; 5.130 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 631 ; 7.098 ; 3.880 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 632 ; 7.092 ; 3.881 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 904 ; 9.389 ; 5.554 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 905 ; 9.383 ; 5.555 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6XIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 125 REMARK 200 PH : 6.0 - 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : BE CLR/SI ELLIPTICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8370 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.19100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM MAGNESIUM CHLORIDE, 2.0 - 2.8M REMARK 280 SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.75800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.51600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.51600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.75800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 406 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 522 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 184 -4.05 84.08 REMARK 500 GLU A 245 32.25 -97.41 REMARK 500 ASN A 262 45.11 -149.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 218 O REMARK 620 2 GLU A 224 OE1 78.6 REMARK 620 3 GLU A 224 OE2 94.0 54.9 REMARK 620 4 GLU A 305 OE1 74.3 135.0 91.8 REMARK 620 5 GLU A 305 OE2 127.4 126.4 75.2 55.3 REMARK 620 6 HOH A 524 O 103.3 154.2 148.4 68.4 73.2 REMARK 620 7 HOH A 545 O 150.2 75.7 83.4 135.3 80.7 93.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD1 REMARK 620 2 ASP A 243 OD2 53.2 REMARK 620 3 ASP A 270 OD1 161.0 145.1 REMARK 620 4 GLU A 280 O 93.4 128.8 76.4 REMARK 620 5 ASP A 281 OD1 78.1 124.4 83.4 71.9 REMARK 620 6 HOH A 520 O 106.5 80.1 86.3 73.9 145.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 267 OE1 REMARK 620 2 ASP A 269 OD1 71.2 REMARK 620 3 GLU A 280 OE1 145.3 74.6 REMARK 620 4 ASN A 292 OD1 74.3 145.5 139.5 REMARK 620 5 ASP A 293 O 135.6 131.9 67.8 74.9 REMARK 620 6 ASP A 293 OD1 74.9 75.9 91.6 94.4 76.3 REMARK 620 7 Q3M A 401 O09 82.3 78.4 96.4 98.0 133.4 150.0 REMARK 620 8 Q3M A 401 O11 131.4 125.2 74.6 79.6 71.9 148.2 61.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q3M A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 411 DBREF 6XIY A 181 308 UNP Q8IUN9 CLC10_HUMAN 181 308 SEQADV 6XIY SER A 180 UNP Q8IUN9 EXPRESSION TAG SEQRES 1 A 129 SER CYS PRO VAL ASN TRP VAL GLU HIS GLN ASP SER CYS SEQRES 2 A 129 TYR TRP PHE SER HIS SER GLY MET SER TRP ALA GLU ALA SEQRES 3 A 129 GLU LYS TYR CYS GLN LEU LYS ASN ALA HIS LEU VAL VAL SEQRES 4 A 129 ILE ASN SER ARG GLU GLU GLN ASN PHE VAL GLN LYS TYR SEQRES 5 A 129 LEU GLY SER ALA TYR THR TRP MET GLY LEU SER ASP PRO SEQRES 6 A 129 GLU GLY ALA TRP LYS TRP VAL ASP GLY THR ASP TYR ALA SEQRES 7 A 129 THR GLY PHE GLN ASN TRP LYS PRO GLY GLN PRO ASP ASP SEQRES 8 A 129 TRP GLN GLY HIS GLY LEU GLY GLY GLY GLU ASP CYS ALA SEQRES 9 A 129 HIS PHE HIS PRO ASP GLY ARG TRP ASN ASP ASP VAL CYS SEQRES 10 A 129 GLN ARG PRO TYR HIS TRP VAL CYS GLU ALA GLY LEU HET Q3M A 401 16 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET CL A 408 1 HET CL A 409 1 HET CL A 410 1 HET CL A 411 1 HETNAM Q3M METHYL 2-(ACETYLAMINO)-2-DEOXY-1-THIO-ALPHA-D- HETNAM 2 Q3M GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN Q3M N-[(1R,2R,3S,4R,6S)-2,3-DIHYDROXY-4-(HYDROXYMETHYL)-6- HETSYN 2 Q3M (METHYLSULFANYL)CYCLOHEXYL]ACETAMIDE FORMUL 2 Q3M C10 H19 N O4 S FORMUL 3 CA 3(CA 2+) FORMUL 6 CL 7(CL 1-) FORMUL 13 HOH *85(H2 O) HELIX 1 AA1 SER A 201 LYS A 212 1 12 HELIX 2 AA2 SER A 221 TYR A 231 1 11 SHEET 1 AA1 5 VAL A 186 HIS A 188 0 SHEET 2 AA1 5 SER A 191 PHE A 195 -1 O TYR A 193 N VAL A 186 SHEET 3 AA1 5 HIS A 301 GLY A 307 -1 O ALA A 306 N CYS A 192 SHEET 4 AA1 5 THR A 237 SER A 242 1 N TRP A 238 O HIS A 301 SHEET 5 AA1 5 LYS A 249 TRP A 250 -1 O LYS A 249 N SER A 242 SHEET 1 AA2 5 HIS A 215 LEU A 216 0 SHEET 2 AA2 5 HIS A 301 GLY A 307 -1 O GLU A 305 N HIS A 215 SHEET 3 AA2 5 THR A 237 SER A 242 1 N TRP A 238 O HIS A 301 SHEET 4 AA2 5 CYS A 282 PHE A 285 -1 O PHE A 285 N THR A 237 SHEET 5 AA2 5 TRP A 291 ASP A 294 -1 O ASP A 294 N CYS A 282 SSBOND 1 CYS A 181 CYS A 192 1555 1555 2.11 SSBOND 2 CYS A 209 CYS A 304 1555 1555 2.19 SSBOND 3 CYS A 282 CYS A 296 1555 1555 2.03 LINK O VAL A 218 CA CA A 402 1555 1555 2.36 LINK OE1 GLU A 224 CA CA A 402 1555 1555 2.39 LINK OE2 GLU A 224 CA CA A 402 1555 1555 2.33 LINK OD1 ASP A 243 CA CA A 404 1555 1555 2.41 LINK OD2 ASP A 243 CA CA A 404 1555 1555 2.43 LINK OE1 GLN A 267 CA CA A 403 1555 1555 2.40 LINK OD1 ASP A 269 CA CA A 403 1555 1555 2.37 LINK OD1 ASP A 270 CA CA A 404 1555 1555 2.39 LINK OE1 GLU A 280 CA CA A 403 1555 1555 2.33 LINK O GLU A 280 CA CA A 404 1555 1555 2.35 LINK OD1 ASP A 281 CA CA A 404 1555 1555 2.38 LINK OD1 ASN A 292 CA CA A 403 1555 1555 2.35 LINK O ASP A 293 CA CA A 403 1555 1555 2.38 LINK OD1 ASP A 293 CA CA A 403 1555 1555 2.28 LINK OE1 GLU A 305 CA CA A 402 1555 1555 2.40 LINK OE2 GLU A 305 CA CA A 402 1555 1555 2.36 LINK O09 Q3M A 401 CA CA A 403 1555 1555 2.33 LINK O11 Q3M A 401 CA CA A 403 1555 1555 2.38 LINK CA CA A 402 O HOH A 524 1555 1555 2.34 LINK CA CA A 402 O HOH A 545 1555 1555 2.32 LINK CA CA A 404 O HOH A 520 1555 1555 2.35 CISPEP 1 GLN A 267 PRO A 268 0 -2.69 SITE 1 AC1 10 TYR A 236 GLN A 267 ASP A 269 TRP A 271 SITE 2 AC1 10 GLU A 280 HIS A 286 ASN A 292 ASP A 293 SITE 3 AC1 10 CA A 403 HOH A 529 SITE 1 AC2 6 VAL A 218 ASN A 220 GLU A 224 GLU A 305 SITE 2 AC2 6 HOH A 524 HOH A 545 SITE 1 AC3 6 GLN A 267 ASP A 269 GLU A 280 ASN A 292 SITE 2 AC3 6 ASP A 293 Q3M A 401 SITE 1 AC4 5 ASP A 243 ASP A 270 GLU A 280 ASP A 281 SITE 2 AC4 5 HOH A 520 SITE 1 AC5 2 GLN A 272 HOH A 544 SITE 1 AC6 2 ARG A 298 HOH A 573 SITE 1 AC7 3 TRP A 194 HIS A 197 SER A 198 SITE 1 AC8 3 ASP A 281 CYS A 296 HOH A 528 SITE 1 AC9 2 ALA A 247 TRP A 248 SITE 1 AD1 2 LYS A 264 ASP A 288 SITE 1 AD2 4 GLN A 261 ASN A 262 TRP A 263 HOH A 585 CRYST1 52.289 52.289 113.274 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019124 0.011042 0.000000 0.00000 SCALE2 0.000000 0.022083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008828 0.00000