HEADER HYDROLASE 24-JUN-20 6XJO TITLE HUMAN ATLASTIN-3 (RESIDUES 1-334) BOUND TO GDP-MG2+ EXHIBITS AN TITLE 2 ORDERED AMINO TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATLASTIN-3; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.5.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GTPASE, FUSOGEN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.O'DONNELL,H.SONDERMANN REVDAT 3 18-OCT-23 6XJO 1 REMARK REVDAT 2 10-NOV-21 6XJO 1 JRNL REVDAT 1 30-JUN-21 6XJO 0 JRNL AUTH C.M.KELLY,L.J.BYRNES,N.NEELA,H.SONDERMANN,J.P.O'DONNELL JRNL TITL THE HYPERVARIABLE REGION OF ATLASTIN-1 IS A SITE FOR JRNL TITL 2 INTRINSIC AND EXTRINSIC REGULATION. JRNL REF J.CELL BIOL. V. 220 2021 JRNL REFN ESSN 1540-8140 JRNL PMID 34546351 JRNL DOI 10.1083/JCB.202104128 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0200 - 6.2900 0.97 2554 138 0.1725 0.2164 REMARK 3 2 6.2900 - 5.0000 1.00 2627 134 0.1701 0.2027 REMARK 3 3 5.0000 - 4.3700 1.00 2654 142 0.1322 0.1812 REMARK 3 4 4.3700 - 3.9700 1.00 2610 136 0.1298 0.1993 REMARK 3 5 3.9700 - 3.6800 1.00 2612 142 0.1432 0.1696 REMARK 3 6 3.6800 - 3.4700 1.00 2638 145 0.1555 0.2268 REMARK 3 7 3.4700 - 3.2900 1.00 2628 143 0.1659 0.2493 REMARK 3 8 3.2900 - 3.1500 1.00 2637 133 0.1793 0.2192 REMARK 3 9 3.1500 - 3.0300 1.00 2637 143 0.1697 0.2305 REMARK 3 10 3.0300 - 2.9200 1.00 2610 133 0.1934 0.2323 REMARK 3 11 2.9200 - 2.8300 1.00 2617 141 0.1953 0.2659 REMARK 3 12 2.8300 - 2.7500 1.00 2617 139 0.2001 0.2301 REMARK 3 13 2.7500 - 2.6800 1.00 2650 143 0.1976 0.2940 REMARK 3 14 2.6800 - 2.6100 1.00 2606 140 0.2026 0.2659 REMARK 3 15 2.6100 - 2.5500 1.00 2657 145 0.2104 0.2754 REMARK 3 16 2.5500 - 2.5000 1.00 2618 137 0.2098 0.2692 REMARK 3 17 2.5000 - 2.4500 1.00 2599 140 0.2165 0.3024 REMARK 3 18 2.4500 - 2.4000 1.00 2685 142 0.2252 0.2652 REMARK 3 19 2.4000 - 2.3600 1.00 2556 142 0.2232 0.2889 REMARK 3 20 2.3600 - 2.3200 1.00 2651 141 0.2402 0.2921 REMARK 3 21 2.3200 - 2.2800 1.00 2674 142 0.2487 0.2758 REMARK 3 22 2.2800 - 2.2500 1.00 2569 140 0.2467 0.2873 REMARK 3 23 2.2500 - 2.2200 1.00 2622 140 0.2518 0.2997 REMARK 3 24 2.2200 - 2.1800 1.00 2663 139 0.2608 0.2612 REMARK 3 25 2.1800 - 2.1500 1.00 2617 141 0.2825 0.3055 REMARK 3 26 2.1500 - 2.1300 1.00 2612 135 0.2859 0.3580 REMARK 3 27 2.1300 - 2.1000 1.00 2606 139 0.3040 0.3455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.262 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.079 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4947 REMARK 3 ANGLE : 0.911 6718 REMARK 3 CHIRALITY : 0.054 761 REMARK 3 PLANARITY : 0.006 847 REMARK 3 DIHEDRAL : 16.017 674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:21) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2418 -13.6050 -45.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.8704 T22: 0.6223 REMARK 3 T33: 0.5384 T12: -0.0140 REMARK 3 T13: 0.0643 T23: 0.1016 REMARK 3 L TENSOR REMARK 3 L11: 6.5554 L22: 5.7302 REMARK 3 L33: 2.4195 L12: 0.6326 REMARK 3 L13: -2.9309 L23: 2.1623 REMARK 3 S TENSOR REMARK 3 S11: -0.6009 S12: -1.1420 S13: -0.5657 REMARK 3 S21: 0.9601 S22: -0.0024 S23: 0.7523 REMARK 3 S31: 2.2053 S32: 0.1196 S33: 0.5017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 22:241) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8045 5.8045 -14.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.3206 T22: 0.2889 REMARK 3 T33: 0.3830 T12: -0.0075 REMARK 3 T13: 0.0316 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 1.5466 L22: 4.0846 REMARK 3 L33: 2.7075 L12: -0.1781 REMARK 3 L13: -0.2404 L23: -1.3332 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: 0.1411 S13: 0.3665 REMARK 3 S21: -0.2658 S22: -0.0701 S23: -0.3269 REMARK 3 S31: -0.4715 S32: 0.0890 S33: -0.0448 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 242:332) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0932 6.0661 -12.9611 REMARK 3 T TENSOR REMARK 3 T11: 0.3611 T22: 0.2829 REMARK 3 T33: 0.3721 T12: 0.0209 REMARK 3 T13: 0.0360 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.8896 L22: 3.0810 REMARK 3 L33: 2.9356 L12: -0.0471 REMARK 3 L13: -0.2648 L23: -1.4199 REMARK 3 S TENSOR REMARK 3 S11: 0.1187 S12: 0.1711 S13: 0.4444 REMARK 3 S21: -0.1167 S22: 0.0449 S23: -0.1617 REMARK 3 S31: -0.5522 S32: -0.0169 S33: -0.1437 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 22:100) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0791 -10.5642 28.9341 REMARK 3 T TENSOR REMARK 3 T11: 0.3391 T22: 0.3363 REMARK 3 T33: 0.3356 T12: -0.0018 REMARK 3 T13: 0.1288 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 2.1665 L22: 2.4677 REMARK 3 L33: 4.7191 L12: -0.3260 REMARK 3 L13: 0.4268 L23: -0.1230 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.3091 S13: 0.1580 REMARK 3 S21: 0.5683 S22: -0.0355 S23: 0.5313 REMARK 3 S31: 0.1599 S32: -0.5427 S33: 0.0612 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 101:246) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1552 -3.7569 19.6657 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.2633 REMARK 3 T33: 0.2601 T12: 0.0317 REMARK 3 T13: -0.0371 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.0810 L22: 3.1401 REMARK 3 L33: 4.4097 L12: 0.1313 REMARK 3 L13: -0.5820 L23: -0.1329 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: 0.0096 S13: 0.1323 REMARK 3 S21: 0.2125 S22: -0.0473 S23: 0.0470 REMARK 3 S31: -0.1399 S32: -0.0447 S33: 0.0724 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 247:333) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5511 -8.6586 22.1859 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2590 REMARK 3 T33: 0.2620 T12: 0.0369 REMARK 3 T13: 0.0346 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.3581 L22: 1.9352 REMARK 3 L33: 3.1572 L12: -0.1594 REMARK 3 L13: 0.4314 L23: -0.1380 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: -0.1558 S13: 0.1459 REMARK 3 S21: 0.2984 S22: -0.0135 S23: -0.0081 REMARK 3 S31: -0.0400 S32: 0.0981 S33: 0.0543 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5VGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 187.5 MM AMMONIUM ACETATE, 21.5% REMARK 280 PEG3350, 100 MM BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 35 REMARK 465 GLN A 36 REMARK 465 GLY A 91 REMARK 465 HIS A 92 REMARK 465 SER A 93 REMARK 465 SER A 112 REMARK 465 ASP A 113 REMARK 465 GLY A 334 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 ARG B 6 REMARK 465 VAL B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 ASP B 16 REMARK 465 ASP B 17 REMARK 465 ALA B 18 REMARK 465 MET B 19 REMARK 465 GLU B 20 REMARK 465 SER B 21 REMARK 465 GLN B 33 REMARK 465 LYS B 34 REMARK 465 ASP B 35 REMARK 465 GLN B 36 REMARK 465 GLY B 91 REMARK 465 HIS B 92 REMARK 465 SER B 93 REMARK 465 GLY B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 PHE B 147 REMARK 465 ASP B 148 REMARK 465 SER B 149 REMARK 465 GLN B 150 REMARK 465 SER B 151 REMARK 465 THR B 152 REMARK 465 VAL B 153 REMARK 465 GLY B 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 HIS A 37 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 39 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 ASN A 94 CG OD1 ND2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 GLN A 150 CG CD OE1 NE2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 ASP A 181 CG OD1 OD2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 TYR A 192 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 195 CG CD1 CD2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 HIS A 241 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 GLN A 247 CG CD OE1 NE2 REMARK 470 ASN A 251 CG OD1 ND2 REMARK 470 ARG A 319 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 333 CG CD OE1 NE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 HIS B 37 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 ASP B 98 CG OD1 OD2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 THR B 104 OG1 CG2 REMARK 470 ASP B 113 CG OD1 OD2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 PHE B 201 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 202 CG CD OE1 NE2 REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 33 -172.15 -173.99 REMARK 500 SER A 38 150.79 74.31 REMARK 500 VAL A 153 -34.37 -141.13 REMARK 500 GLN A 176 -36.88 72.80 REMARK 500 GLN A 206 -100.32 -98.19 REMARK 500 THR B 104 69.54 27.10 REMARK 500 GLN B 176 -39.43 75.75 REMARK 500 GLN B 202 -143.05 -133.59 REMARK 500 GLN B 206 -100.15 -101.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 GDP A 401 O1B 129.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 142 OD2 REMARK 620 2 GDP B 401 O2B 137.8 REMARK 620 3 HOH B 554 O 78.5 122.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 DBREF 6XJO A 1 334 UNP Q6DD88 ATLA3_HUMAN 1 334 DBREF 6XJO B 1 334 UNP Q6DD88 ATLA3_HUMAN 1 334 SEQRES 1 A 334 MET LEU SER PRO GLN ARG VAL ALA ALA ALA ALA SER ARG SEQRES 2 A 334 GLY ALA ASP ASP ALA MET GLU SER SER LYS PRO GLY PRO SEQRES 3 A 334 VAL GLN VAL VAL LEU VAL GLN LYS ASP GLN HIS SER PHE SEQRES 4 A 334 GLU LEU ASP GLU LYS ALA LEU ALA SER ILE LEU LEU GLN SEQRES 5 A 334 ASP HIS ILE ARG ASP LEU ASP VAL VAL VAL VAL SER VAL SEQRES 6 A 334 ALA GLY ALA PHE ARG LYS GLY LYS SER PHE ILE LEU ASP SEQRES 7 A 334 PHE MET LEU ARG TYR LEU TYR SER GLN LYS GLU SER GLY SEQRES 8 A 334 HIS SER ASN TRP LEU GLY ASP PRO GLU GLU PRO LEU THR SEQRES 9 A 334 GLY PHE SER TRP ARG GLY GLY SER ASP PRO GLU THR THR SEQRES 10 A 334 GLY ILE GLN ILE TRP SER GLU VAL PHE THR VAL GLU LYS SEQRES 11 A 334 PRO GLY GLY LYS LYS VAL ALA VAL VAL LEU MET ASP THR SEQRES 12 A 334 GLN GLY ALA PHE ASP SER GLN SER THR VAL LYS ASP CYS SEQRES 13 A 334 ALA THR ILE PHE ALA LEU SER THR MET THR SER SER VAL SEQRES 14 A 334 GLN ILE TYR ASN LEU SER GLN ASN ILE GLN GLU ASP ASP SEQRES 15 A 334 LEU GLN GLN LEU GLN LEU PHE THR GLU TYR GLY ARG LEU SEQRES 16 A 334 ALA MET ASP GLU ILE PHE GLN LYS PRO PHE GLN THR LEU SEQRES 17 A 334 MET PHE LEU VAL ARG ASP TRP SER PHE PRO TYR GLU TYR SEQRES 18 A 334 SER TYR GLY LEU GLN GLY GLY MET ALA PHE LEU ASP LYS SEQRES 19 A 334 ARG LEU GLN VAL LYS GLU HIS GLN HIS GLU GLU ILE GLN SEQRES 20 A 334 ASN VAL ARG ASN HIS ILE HIS SER CYS PHE SER ASP VAL SEQRES 21 A 334 THR CYS PHE LEU LEU PRO HIS PRO GLY LEU GLN VAL ALA SEQRES 22 A 334 THR SER PRO ASP PHE ASP GLY LYS LEU LYS ASP ILE ALA SEQRES 23 A 334 GLY GLU PHE LYS GLU GLN LEU GLN ALA LEU ILE PRO TYR SEQRES 24 A 334 VAL LEU ASN PRO SER LYS LEU MET GLU LYS GLU ILE ASN SEQRES 25 A 334 GLY SER LYS VAL THR CYS ARG GLY LEU LEU GLU TYR PHE SEQRES 26 A 334 LYS ALA TYR ILE LYS ILE TYR GLN GLY SEQRES 1 B 334 MET LEU SER PRO GLN ARG VAL ALA ALA ALA ALA SER ARG SEQRES 2 B 334 GLY ALA ASP ASP ALA MET GLU SER SER LYS PRO GLY PRO SEQRES 3 B 334 VAL GLN VAL VAL LEU VAL GLN LYS ASP GLN HIS SER PHE SEQRES 4 B 334 GLU LEU ASP GLU LYS ALA LEU ALA SER ILE LEU LEU GLN SEQRES 5 B 334 ASP HIS ILE ARG ASP LEU ASP VAL VAL VAL VAL SER VAL SEQRES 6 B 334 ALA GLY ALA PHE ARG LYS GLY LYS SER PHE ILE LEU ASP SEQRES 7 B 334 PHE MET LEU ARG TYR LEU TYR SER GLN LYS GLU SER GLY SEQRES 8 B 334 HIS SER ASN TRP LEU GLY ASP PRO GLU GLU PRO LEU THR SEQRES 9 B 334 GLY PHE SER TRP ARG GLY GLY SER ASP PRO GLU THR THR SEQRES 10 B 334 GLY ILE GLN ILE TRP SER GLU VAL PHE THR VAL GLU LYS SEQRES 11 B 334 PRO GLY GLY LYS LYS VAL ALA VAL VAL LEU MET ASP THR SEQRES 12 B 334 GLN GLY ALA PHE ASP SER GLN SER THR VAL LYS ASP CYS SEQRES 13 B 334 ALA THR ILE PHE ALA LEU SER THR MET THR SER SER VAL SEQRES 14 B 334 GLN ILE TYR ASN LEU SER GLN ASN ILE GLN GLU ASP ASP SEQRES 15 B 334 LEU GLN GLN LEU GLN LEU PHE THR GLU TYR GLY ARG LEU SEQRES 16 B 334 ALA MET ASP GLU ILE PHE GLN LYS PRO PHE GLN THR LEU SEQRES 17 B 334 MET PHE LEU VAL ARG ASP TRP SER PHE PRO TYR GLU TYR SEQRES 18 B 334 SER TYR GLY LEU GLN GLY GLY MET ALA PHE LEU ASP LYS SEQRES 19 B 334 ARG LEU GLN VAL LYS GLU HIS GLN HIS GLU GLU ILE GLN SEQRES 20 B 334 ASN VAL ARG ASN HIS ILE HIS SER CYS PHE SER ASP VAL SEQRES 21 B 334 THR CYS PHE LEU LEU PRO HIS PRO GLY LEU GLN VAL ALA SEQRES 22 B 334 THR SER PRO ASP PHE ASP GLY LYS LEU LYS ASP ILE ALA SEQRES 23 B 334 GLY GLU PHE LYS GLU GLN LEU GLN ALA LEU ILE PRO TYR SEQRES 24 B 334 VAL LEU ASN PRO SER LYS LEU MET GLU LYS GLU ILE ASN SEQRES 25 B 334 GLY SER LYS VAL THR CYS ARG GLY LEU LEU GLU TYR PHE SEQRES 26 B 334 LYS ALA TYR ILE LYS ILE TYR GLN GLY HET GDP A 401 28 HET MG A 402 1 HET GDP B 401 28 HET MG B 402 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *240(H2 O) HELIX 1 AA1 SER A 3 SER A 22 1 20 HELIX 2 AA2 ASP A 42 LEU A 51 1 10 HELIX 3 AA3 GLY A 72 GLU A 89 1 18 HELIX 4 AA4 VAL A 153 THR A 166 1 14 HELIX 5 AA5 GLN A 179 MET A 197 1 19 HELIX 6 AA6 GLY A 224 HIS A 243 1 20 HELIX 7 AA7 GLU A 244 GLN A 247 5 4 HELIX 8 AA8 ASN A 248 CYS A 256 1 9 HELIX 9 AA9 GLY A 269 SER A 275 1 7 HELIX 10 AB1 LYS A 281 ILE A 285 5 5 HELIX 11 AB2 ALA A 286 ASN A 302 1 17 HELIX 12 AB3 PRO A 303 LEU A 306 5 4 HELIX 13 AB4 THR A 317 GLN A 333 1 17 HELIX 14 AB5 ASP B 42 LEU B 51 1 10 HELIX 15 AB6 GLY B 72 GLU B 89 1 18 HELIX 16 AB7 ASP B 155 THR B 166 1 12 HELIX 17 AB8 GLN B 179 ALA B 196 1 18 HELIX 18 AB9 GLY B 224 HIS B 243 1 20 HELIX 19 AC1 GLU B 244 GLN B 247 5 4 HELIX 20 AC2 ASN B 248 CYS B 256 1 9 HELIX 21 AC3 GLY B 269 SER B 275 1 7 HELIX 22 AC4 LYS B 281 ILE B 285 5 5 HELIX 23 AC5 ALA B 286 ASN B 302 1 17 HELIX 24 AC6 PRO B 303 LEU B 306 5 4 HELIX 25 AC7 THR B 317 GLN B 333 1 17 SHEET 1 AA1 5 PHE A 39 LEU A 41 0 SHEET 2 AA1 5 PRO A 26 VAL A 32 -1 N LEU A 31 O GLU A 40 SHEET 3 AA1 5 GLY A 118 TRP A 122 -1 O ILE A 119 N VAL A 29 SHEET 4 AA1 5 LYS A 135 GLN A 144 -1 O ASP A 142 N GLN A 120 SHEET 5 AA1 5 PHE A 126 GLU A 129 -1 N PHE A 126 O VAL A 138 SHEET 1 AA2 8 PHE A 39 LEU A 41 0 SHEET 2 AA2 8 PRO A 26 VAL A 32 -1 N LEU A 31 O GLU A 40 SHEET 3 AA2 8 GLY A 118 TRP A 122 -1 O ILE A 119 N VAL A 29 SHEET 4 AA2 8 LYS A 135 GLN A 144 -1 O ASP A 142 N GLN A 120 SHEET 5 AA2 8 VAL A 60 GLY A 67 1 N VAL A 61 O ALA A 137 SHEET 6 AA2 8 VAL A 169 SER A 175 1 O ILE A 171 N SER A 64 SHEET 7 AA2 8 PHE A 205 TRP A 215 1 O ARG A 213 N LEU A 174 SHEET 8 AA2 8 PHE A 257 PRO A 266 1 O LEU A 265 N TRP A 215 SHEET 1 AA3 2 GLU A 310 ILE A 311 0 SHEET 2 AA3 2 SER A 314 LYS A 315 -1 O SER A 314 N ILE A 311 SHEET 1 AA4 5 GLU B 40 LEU B 41 0 SHEET 2 AA4 5 PRO B 26 LEU B 31 -1 N LEU B 31 O GLU B 40 SHEET 3 AA4 5 GLY B 118 TRP B 122 -1 O ILE B 121 N VAL B 27 SHEET 4 AA4 5 LYS B 135 GLN B 144 -1 O ASP B 142 N GLN B 120 SHEET 5 AA4 5 PHE B 126 GLU B 129 -1 N PHE B 126 O VAL B 138 SHEET 1 AA5 8 GLU B 40 LEU B 41 0 SHEET 2 AA5 8 PRO B 26 LEU B 31 -1 N LEU B 31 O GLU B 40 SHEET 3 AA5 8 GLY B 118 TRP B 122 -1 O ILE B 121 N VAL B 27 SHEET 4 AA5 8 LYS B 135 GLN B 144 -1 O ASP B 142 N GLN B 120 SHEET 5 AA5 8 VAL B 60 GLY B 67 1 N VAL B 61 O ALA B 137 SHEET 6 AA5 8 VAL B 169 SER B 175 1 O ILE B 171 N SER B 64 SHEET 7 AA5 8 PHE B 205 ARG B 213 1 O ARG B 213 N LEU B 174 SHEET 8 AA5 8 PHE B 257 LEU B 264 1 O THR B 261 N LEU B 208 SHEET 1 AA6 2 GLU B 310 ILE B 311 0 SHEET 2 AA6 2 SER B 314 LYS B 315 -1 O SER B 314 N ILE B 311 LINK OD2 ASP A 142 MG MG A 402 1555 1555 2.60 LINK O1B GDP A 401 MG MG A 402 1555 1555 2.75 LINK OD2 ASP B 142 MG MG B 402 1555 1555 2.62 LINK O2B GDP B 401 MG MG B 402 1555 1555 2.69 LINK MG MG B 402 O HOH B 554 1555 1555 2.88 SITE 1 AC1 20 ARG A 70 LYS A 71 GLY A 72 LYS A 73 SITE 2 AC1 20 SER A 74 PHE A 75 ARG A 109 GLN A 144 SITE 3 AC1 20 ARG A 213 ASP A 214 HIS A 267 PRO A 268 SITE 4 AC1 20 VAL A 272 SER A 275 PRO A 276 MG A 402 SITE 5 AC1 20 HOH A 527 HOH A 535 HOH A 579 HOH B 565 SITE 1 AC2 5 LYS A 73 ARG A 109 ASP A 142 GLN A 144 SITE 2 AC2 5 GDP A 401 SITE 1 AC3 20 HOH A 514 ARG B 70 LYS B 71 GLY B 72 SITE 2 AC3 20 LYS B 73 SER B 74 PHE B 75 ARG B 109 SITE 3 AC3 20 GLN B 144 ARG B 213 ASP B 214 HIS B 267 SITE 4 AC3 20 PRO B 268 VAL B 272 ALA B 273 SER B 275 SITE 5 AC3 20 MG B 402 HOH B 526 HOH B 560 HOH B 609 SITE 1 AC4 6 LYS B 73 ARG B 109 ASP B 142 GLN B 144 SITE 2 AC4 6 GDP B 401 HOH B 554 CRYST1 44.480 88.040 168.820 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005923 0.00000