HEADER RNA/IMMUNE SYSTEM 24-JUN-20 6XJY TITLE CRYSTAL STRUCTURE OF A SELF-ALKYLATING RIBOZYME - SHORT TIME TITLE 2 INCUBATION WITH THE EPOXIDE SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SELF-ALKYLATING RIBOZYME (58-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB HAVX HEAVY CHAIN; COMPND 7 CHAIN: C, H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FAB HAVX LIGHT CHAIN; COMPND 11 CHAIN: D, L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 4 ORGANISM_TAXID: 56636; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SELF-ALKYLATING RIBOZYME, ANTIBODY-ASSISTED RNA CRYSTALLOGRAPHY, RNA KEYWDS 2 CATALYSIS, RNA-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.KOIRALA,J.A.PICCIRILLI REVDAT 4 18-OCT-23 6XJY 1 REMARK REVDAT 3 13-APR-22 6XJY 1 JRNL REVDAT 2 09-FEB-22 6XJY 1 JRNL REVDAT 1 19-JAN-22 6XJY 0 JRNL AUTH D.KROCHMAL,Y.SHAO,N.S.LI,S.DASGUPTA,S.A.SHELKE,D.KOIRALA, JRNL AUTH 2 J.A.PICCIRILLI JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE BINDING AND CATALYSIS BY A JRNL TITL 2 SELF-ALKYLATING RIBOZYME. JRNL REF NAT.CHEM.BIOL. V. 18 376 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 35058645 JRNL DOI 10.1038/S41589-021-00950-Z REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 68918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.8510 - 5.1944 0.96 4901 151 0.1884 0.2339 REMARK 3 2 5.1944 - 4.1232 0.99 4943 146 0.1777 0.2040 REMARK 3 3 4.1232 - 3.6020 0.97 4804 139 0.2047 0.2513 REMARK 3 4 3.6020 - 3.2727 0.97 4796 151 0.2234 0.3440 REMARK 3 5 3.2727 - 3.0382 0.98 4875 144 0.2475 0.3143 REMARK 3 6 3.0382 - 2.8590 0.98 4851 139 0.2578 0.3194 REMARK 3 7 2.8590 - 2.7159 0.98 4869 154 0.2621 0.3194 REMARK 3 8 2.7159 - 2.5976 0.98 4831 144 0.2760 0.3206 REMARK 3 9 2.5976 - 2.4976 0.96 4773 142 0.2773 0.3860 REMARK 3 10 2.4976 - 2.4114 0.97 4795 134 0.2907 0.3695 REMARK 3 11 2.4114 - 2.3360 0.97 4793 150 0.2870 0.3083 REMARK 3 12 2.3360 - 2.2693 0.97 4816 146 0.3001 0.3298 REMARK 3 13 2.2693 - 2.2095 0.96 4729 139 0.3200 0.3985 REMARK 3 14 2.2095 - 2.1560 0.83 4136 127 0.3555 0.4119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1386 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 2025 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN D REMARK 3 SELECTION : CHAIN L REMARK 3 ATOM PAIRS NUMBER : 2026 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69519 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.156 REMARK 200 RESOLUTION RANGE LOW (A) : 79.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 1.86700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6MWN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM FLUORIDE, 10% PEG3350, REMARK 280 PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.69100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -22 REMARK 465 LYS C -21 REMARK 465 LYS C -20 REMARK 465 ASN C -19 REMARK 465 ILE C -18 REMARK 465 ALA C -17 REMARK 465 PHE C -16 REMARK 465 LEU C -15 REMARK 465 LEU C -14 REMARK 465 ALA C -13 REMARK 465 SER C -12 REMARK 465 MET C -11 REMARK 465 PHE C -10 REMARK 465 VAL C -9 REMARK 465 PHE C -8 REMARK 465 SER C -7 REMARK 465 ILE C -6 REMARK 465 ALA C -5 REMARK 465 THR C -4 REMARK 465 ASN C -3 REMARK 465 ALA C -2 REMARK 465 TYR C -1 REMARK 465 ALA C 0 REMARK 465 GLU C 1 REMARK 465 ILE C 2 REMARK 465 SER C 3 REMARK 465 SER C 229 REMARK 465 CYS C 230 REMARK 465 ASP C 231 REMARK 465 LYS C 232 REMARK 465 THR C 233 REMARK 465 HIS C 234 REMARK 465 THR C 235 REMARK 465 MET D -22 REMARK 465 LYS D -21 REMARK 465 LYS D -20 REMARK 465 ASN D -19 REMARK 465 ILE D -18 REMARK 465 ALA D -17 REMARK 465 PHE D -16 REMARK 465 LEU D -15 REMARK 465 LEU D -14 REMARK 465 ALA D -13 REMARK 465 SER D -12 REMARK 465 MET D -11 REMARK 465 PHE D -10 REMARK 465 VAL D -9 REMARK 465 PHE D -8 REMARK 465 SER D -7 REMARK 465 ILE D -6 REMARK 465 ALA D -5 REMARK 465 THR D -4 REMARK 465 ASN D -3 REMARK 465 ALA D -2 REMARK 465 TYR D -1 REMARK 465 ALA D 0 REMARK 465 CYS D 215 REMARK 465 MET H -22 REMARK 465 LYS H -21 REMARK 465 LYS H -20 REMARK 465 ASN H -19 REMARK 465 ILE H -18 REMARK 465 ALA H -17 REMARK 465 PHE H -16 REMARK 465 LEU H -15 REMARK 465 LEU H -14 REMARK 465 ALA H -13 REMARK 465 SER H -12 REMARK 465 MET H -11 REMARK 465 PHE H -10 REMARK 465 VAL H -9 REMARK 465 PHE H -8 REMARK 465 SER H -7 REMARK 465 ILE H -6 REMARK 465 ALA H -5 REMARK 465 THR H -4 REMARK 465 ASN H -3 REMARK 465 ALA H -2 REMARK 465 TYR H -1 REMARK 465 ALA H 0 REMARK 465 GLU H 1 REMARK 465 ILE H 2 REMARK 465 SER H 3 REMARK 465 SER H 229 REMARK 465 CYS H 230 REMARK 465 ASP H 231 REMARK 465 LYS H 232 REMARK 465 THR H 233 REMARK 465 HIS H 234 REMARK 465 THR H 235 REMARK 465 MET L -22 REMARK 465 LYS L -21 REMARK 465 LYS L -20 REMARK 465 ASN L -19 REMARK 465 ILE L -18 REMARK 465 ALA L -17 REMARK 465 PHE L -16 REMARK 465 LEU L -15 REMARK 465 LEU L -14 REMARK 465 ALA L -13 REMARK 465 SER L -12 REMARK 465 MET L -11 REMARK 465 PHE L -10 REMARK 465 VAL L -9 REMARK 465 PHE L -8 REMARK 465 SER L -7 REMARK 465 ILE L -6 REMARK 465 ALA L -5 REMARK 465 THR L -4 REMARK 465 ASN L -3 REMARK 465 ALA L -2 REMARK 465 TYR L -1 REMARK 465 ALA L 0 REMARK 465 CYS L 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 C B 58 O HOH B 101 2.08 REMARK 500 OP1 G A 1 O HOH A 101 2.08 REMARK 500 O HOH C 333 O HOH C 345 2.10 REMARK 500 O HOH A 139 O HOH H 339 2.11 REMARK 500 O HOH C 338 O HOH C 342 2.12 REMARK 500 N TYR C 109 O HOH C 301 2.13 REMARK 500 O HOH L 305 O HOH L 311 2.14 REMARK 500 OH TYR L 56 O HOH L 301 2.16 REMARK 500 O VAL D 147 O HOH D 301 2.17 REMARK 500 O HOH H 323 O HOH L 335 2.17 REMARK 500 O HOH B 114 O HOH C 342 2.19 REMARK 500 O HOH B 141 O HOH B 142 2.19 REMARK 500 O HOH H 318 O HOH H 321 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A 31 O5' - P - OP2 ANGL. DEV. = -8.0 DEGREES REMARK 500 G B 11 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 95 162.22 179.50 REMARK 500 TRP C 112 -153.90 -97.71 REMARK 500 ASP C 158 62.47 62.90 REMARK 500 PHE C 160 136.99 -170.02 REMARK 500 TYR D 31 -118.34 55.23 REMARK 500 ALA D 52 -23.88 68.06 REMARK 500 SER D 53 2.92 -150.65 REMARK 500 ALA D 85 -179.98 -177.45 REMARK 500 GLU H 92 1.16 -66.89 REMARK 500 TYR H 106 1.49 -69.55 REMARK 500 TYR H 109 1.48 58.46 REMARK 500 TRP H 112 -151.59 -98.77 REMARK 500 SER H 146 -60.52 -101.50 REMARK 500 ASP H 158 61.54 64.07 REMARK 500 PHE H 160 140.07 -171.02 REMARK 500 TYR L 31 -96.57 59.33 REMARK 500 TYR L 32 31.50 -143.38 REMARK 500 SER L 33 74.80 -103.76 REMARK 500 ALA L 52 -21.06 69.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 6XJY A 1 58 PDB 6XJY 6XJY 1 58 DBREF 6XJY B 1 58 PDB 6XJY 6XJY 1 58 DBREF 6XJY C -22 235 PDB 6XJY 6XJY -22 235 DBREF 6XJY D -22 215 PDB 6XJY 6XJY -22 215 DBREF 6XJY H -22 235 PDB 6XJY 6XJY -22 235 DBREF 6XJY L -22 215 PDB 6XJY 6XJY -22 215 SEQRES 1 A 58 G G C C G C U C C A G A A SEQRES 2 A 58 G A G G G C C C C C U U G SEQRES 3 A 58 C C C G U U A U C G G G G SEQRES 4 A 58 G C U A G G C U C G A U G SEQRES 5 A 58 U C G G C C SEQRES 1 B 58 G G C C G C U C C A G A A SEQRES 2 B 58 G A G G G C C C C C U U G SEQRES 3 B 58 C C C G U U A U C G G G G SEQRES 4 B 58 G C U A G G C U C G A U G SEQRES 5 B 58 U C G G C C SEQRES 1 C 258 MET LYS LYS ASN ILE ALA PHE LEU LEU ALA SER MET PHE SEQRES 2 C 258 VAL PHE SER ILE ALA THR ASN ALA TYR ALA GLU ILE SER SEQRES 3 C 258 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 4 C 258 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 5 C 258 PHE SER LEU SER SER SER SER MET HIS TRP VAL ARG GLN SEQRES 6 C 258 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 7 C 258 PRO TYR SER GLY SER THR SER TYR ALA ASP SER VAL LYS SEQRES 8 C 258 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 9 C 258 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 10 C 258 ALA VAL TYR TYR CYS ALA ARG THR LYS TYR HIS TYR LYS SEQRES 11 C 258 ASN TYR TYR TRP TRP ALA LEU ASP TYR TRP GLY GLN GLY SEQRES 12 C 258 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 13 C 258 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 14 C 258 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 15 C 258 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 16 C 258 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 17 C 258 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 18 C 258 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 19 C 258 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 20 C 258 VAL GLU PRO LYS SER CYS ASP LYS THR HIS THR SEQRES 1 D 238 MET LYS LYS ASN ILE ALA PHE LEU LEU ALA SER MET PHE SEQRES 2 D 238 VAL PHE SER ILE ALA THR ASN ALA TYR ALA SER ASP ILE SEQRES 3 D 238 GLN MET THR GLN SER PRO SER SER LEU SER ALA SER VAL SEQRES 4 D 238 GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER GLN SER SEQRES 5 D 238 VAL TYR TYR SER VAL ALA TRP TYR GLN GLN LYS PRO GLY SEQRES 6 D 238 LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER TYR LEU SEQRES 7 D 238 TYR SER GLY VAL PRO SER ARG PHE SER GLY SER ARG SER SEQRES 8 D 238 GLY THR ASP PHE THR LEU THR ILE SER SER LEU GLN PRO SEQRES 9 D 238 GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR ARG ARG SEQRES 10 D 238 ARG PRO ILE THR PHE GLY GLN GLY THR LYS VAL GLU ILE SEQRES 11 D 238 LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO SEQRES 12 D 238 PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL SEQRES 13 D 238 VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS SEQRES 14 D 238 VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SEQRES 15 D 238 SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER SEQRES 16 D 238 THR TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA SEQRES 17 D 238 ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR SEQRES 18 D 238 HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN SEQRES 19 D 238 ARG GLY GLU CYS SEQRES 1 H 258 MET LYS LYS ASN ILE ALA PHE LEU LEU ALA SER MET PHE SEQRES 2 H 258 VAL PHE SER ILE ALA THR ASN ALA TYR ALA GLU ILE SER SEQRES 3 H 258 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 4 H 258 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 5 H 258 PHE SER LEU SER SER SER SER MET HIS TRP VAL ARG GLN SEQRES 6 H 258 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 7 H 258 PRO TYR SER GLY SER THR SER TYR ALA ASP SER VAL LYS SEQRES 8 H 258 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 9 H 258 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 10 H 258 ALA VAL TYR TYR CYS ALA ARG THR LYS TYR HIS TYR LYS SEQRES 11 H 258 ASN TYR TYR TRP TRP ALA LEU ASP TYR TRP GLY GLN GLY SEQRES 12 H 258 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 13 H 258 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 14 H 258 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 15 H 258 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 16 H 258 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 17 H 258 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 18 H 258 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 19 H 258 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 20 H 258 VAL GLU PRO LYS SER CYS ASP LYS THR HIS THR SEQRES 1 L 238 MET LYS LYS ASN ILE ALA PHE LEU LEU ALA SER MET PHE SEQRES 2 L 238 VAL PHE SER ILE ALA THR ASN ALA TYR ALA SER ASP ILE SEQRES 3 L 238 GLN MET THR GLN SER PRO SER SER LEU SER ALA SER VAL SEQRES 4 L 238 GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER GLN SER SEQRES 5 L 238 VAL TYR TYR SER VAL ALA TRP TYR GLN GLN LYS PRO GLY SEQRES 6 L 238 LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER TYR LEU SEQRES 7 L 238 TYR SER GLY VAL PRO SER ARG PHE SER GLY SER ARG SER SEQRES 8 L 238 GLY THR ASP PHE THR LEU THR ILE SER SER LEU GLN PRO SEQRES 9 L 238 GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR ARG ARG SEQRES 10 L 238 ARG PRO ILE THR PHE GLY GLN GLY THR LYS VAL GLU ILE SEQRES 11 L 238 LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO SEQRES 12 L 238 PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL SEQRES 13 L 238 VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS SEQRES 14 L 238 VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SEQRES 15 L 238 SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER SEQRES 16 L 238 THR TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA SEQRES 17 L 238 ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR SEQRES 18 L 238 HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN SEQRES 19 L 238 ARG GLY GLU CYS FORMUL 7 HOH *272(H2 O) HELIX 1 AA1 SER C 31 SER C 33 5 3 HELIX 2 AA2 ARG C 90 THR C 94 5 5 HELIX 3 AA3 SER C 170 ALA C 172 5 3 HELIX 4 AA4 SER C 201 LEU C 203 5 3 HELIX 5 AA5 LYS C 215 ASN C 218 5 4 HELIX 6 AA6 GLN D 80 PHE D 84 5 5 HELIX 7 AA7 SER D 122 SER D 128 1 7 HELIX 8 AA8 LYS D 184 LYS D 189 1 6 HELIX 9 AA9 SER H 31 SER H 33 5 3 HELIX 10 AB1 ARG H 90 THR H 94 5 5 HELIX 11 AB2 SER H 170 ALA H 172 5 3 HELIX 12 AB3 SER H 201 GLY H 204 5 4 HELIX 13 AB4 LYS H 215 ASN H 218 5 4 HELIX 14 AB5 GLN L 80 PHE L 84 5 5 HELIX 15 AB6 SER L 122 SER L 128 1 7 HELIX 16 AB7 LYS L 184 LYS L 189 1 6 SHEET 1 AA1 4 GLN C 6 SER C 10 0 SHEET 2 AA1 4 LEU C 21 SER C 28 -1 O ALA C 26 N VAL C 8 SHEET 3 AA1 4 THR C 81 MET C 86 -1 O MET C 86 N LEU C 21 SHEET 4 AA1 4 PHE C 71 ASP C 76 -1 N SER C 74 O TYR C 83 SHEET 1 AA2 6 LEU C 14 VAL C 15 0 SHEET 2 AA2 6 THR C 121 VAL C 125 1 O THR C 124 N VAL C 15 SHEET 3 AA2 6 ALA C 95 LYS C 103 -1 N TYR C 97 O THR C 121 SHEET 4 AA2 6 SER C 35 GLN C 42 -1 N VAL C 40 O TYR C 98 SHEET 5 AA2 6 GLU C 49 ILE C 54 -1 O ILE C 54 N MET C 37 SHEET 6 AA2 6 THR C 61 TYR C 63 -1 O SER C 62 N SER C 53 SHEET 1 AA3 4 LEU C 14 VAL C 15 0 SHEET 2 AA3 4 THR C 121 VAL C 125 1 O THR C 124 N VAL C 15 SHEET 3 AA3 4 ALA C 95 LYS C 103 -1 N TYR C 97 O THR C 121 SHEET 4 AA3 4 TYR C 116 TRP C 117 -1 O TYR C 116 N ARG C 101 SHEET 1 AA4 4 SER C 134 LEU C 138 0 SHEET 2 AA4 4 THR C 149 TYR C 159 -1 O GLY C 153 N LEU C 138 SHEET 3 AA4 4 TYR C 190 PRO C 199 -1 O LEU C 192 N VAL C 156 SHEET 4 AA4 4 VAL C 177 THR C 179 -1 N HIS C 178 O VAL C 195 SHEET 1 AA5 4 SER C 134 LEU C 138 0 SHEET 2 AA5 4 THR C 149 TYR C 159 -1 O GLY C 153 N LEU C 138 SHEET 3 AA5 4 TYR C 190 PRO C 199 -1 O LEU C 192 N VAL C 156 SHEET 4 AA5 4 VAL C 183 LEU C 184 -1 N VAL C 183 O SER C 191 SHEET 1 AA6 3 THR C 165 TRP C 168 0 SHEET 2 AA6 3 TYR C 208 HIS C 214 -1 O ASN C 211 N SER C 167 SHEET 3 AA6 3 THR C 219 VAL C 225 -1 O VAL C 221 N VAL C 212 SHEET 1 AA7 4 MET D 5 SER D 8 0 SHEET 2 AA7 4 VAL D 20 ALA D 26 -1 O ARG D 25 N THR D 6 SHEET 3 AA7 4 ASP D 71 ILE D 76 -1 O LEU D 74 N ILE D 22 SHEET 4 AA7 4 PHE D 63 SER D 68 -1 N SER D 64 O THR D 75 SHEET 1 AA8 6 SER D 11 ALA D 14 0 SHEET 2 AA8 6 THR D 103 ILE D 107 1 O GLU D 106 N LEU D 12 SHEET 3 AA8 6 THR D 86 GLN D 91 -1 N TYR D 87 O THR D 103 SHEET 4 AA8 6 VAL D 34 GLN D 39 -1 N TYR D 37 O TYR D 88 SHEET 5 AA8 6 LYS D 46 TYR D 50 -1 O LEU D 48 N TRP D 36 SHEET 6 AA8 6 TYR D 54 LEU D 55 -1 O TYR D 54 N TYR D 50 SHEET 1 AA9 4 SER D 11 ALA D 14 0 SHEET 2 AA9 4 THR D 103 ILE D 107 1 O GLU D 106 N LEU D 12 SHEET 3 AA9 4 THR D 86 GLN D 91 -1 N TYR D 87 O THR D 103 SHEET 4 AA9 4 THR D 98 PHE D 99 -1 O THR D 98 N GLN D 91 SHEET 1 AB1 4 SER D 115 PHE D 119 0 SHEET 2 AB1 4 THR D 130 PHE D 140 -1 O LEU D 136 N PHE D 117 SHEET 3 AB1 4 TYR D 174 SER D 183 -1 O LEU D 180 N VAL D 133 SHEET 4 AB1 4 SER D 160 VAL D 164 -1 N GLN D 161 O THR D 179 SHEET 1 AB2 4 ALA D 154 LEU D 155 0 SHEET 2 AB2 4 LYS D 146 VAL D 151 -1 N VAL D 151 O ALA D 154 SHEET 3 AB2 4 VAL D 192 THR D 198 -1 O ALA D 194 N LYS D 150 SHEET 4 AB2 4 VAL D 206 ASN D 211 -1 O VAL D 206 N VAL D 197 SHEET 1 AB3 4 GLN H 6 SER H 10 0 SHEET 2 AB3 4 LEU H 21 SER H 28 -1 O ALA H 26 N VAL H 8 SHEET 3 AB3 4 THR H 81 MET H 86 -1 O MET H 86 N LEU H 21 SHEET 4 AB3 4 PHE H 71 ASP H 76 -1 N SER H 74 O TYR H 83 SHEET 1 AB4 6 LEU H 14 VAL H 15 0 SHEET 2 AB4 6 THR H 121 VAL H 125 1 O THR H 124 N VAL H 15 SHEET 3 AB4 6 ALA H 95 LYS H 103 -1 N TYR H 97 O THR H 121 SHEET 4 AB4 6 SER H 35 GLN H 42 -1 N GLN H 42 O VAL H 96 SHEET 5 AB4 6 GLU H 49 ILE H 54 -1 O GLU H 49 N ARG H 41 SHEET 6 AB4 6 THR H 61 TYR H 63 -1 O SER H 62 N SER H 53 SHEET 1 AB5 4 LEU H 14 VAL H 15 0 SHEET 2 AB5 4 THR H 121 VAL H 125 1 O THR H 124 N VAL H 15 SHEET 3 AB5 4 ALA H 95 LYS H 103 -1 N TYR H 97 O THR H 121 SHEET 4 AB5 4 TYR H 116 TRP H 117 -1 O TYR H 116 N ARG H 101 SHEET 1 AB6 4 SER H 134 LEU H 138 0 SHEET 2 AB6 4 THR H 149 TYR H 159 -1 O LEU H 155 N PHE H 136 SHEET 3 AB6 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AB6 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AB7 4 SER H 134 LEU H 138 0 SHEET 2 AB7 4 THR H 149 TYR H 159 -1 O LEU H 155 N PHE H 136 SHEET 3 AB7 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AB7 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AB8 3 THR H 165 TRP H 168 0 SHEET 2 AB8 3 TYR H 208 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AB8 3 THR H 219 VAL H 225 -1 O VAL H 221 N VAL H 212 SHEET 1 AB9 4 MET L 5 SER L 8 0 SHEET 2 AB9 4 VAL L 20 ALA L 26 -1 O ARG L 25 N THR L 6 SHEET 3 AB9 4 ASP L 71 ILE L 76 -1 O LEU L 74 N ILE L 22 SHEET 4 AB9 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AC1 6 SER L 11 ALA L 14 0 SHEET 2 AC1 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 AC1 6 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AC1 6 VAL L 34 GLN L 39 -1 N TYR L 37 O TYR L 88 SHEET 5 AC1 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AC1 6 TYR L 54 LEU L 55 -1 O TYR L 54 N TYR L 50 SHEET 1 AC2 4 SER L 11 ALA L 14 0 SHEET 2 AC2 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 AC2 4 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AC2 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AC3 4 SER L 115 PHE L 119 0 SHEET 2 AC3 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 AC3 4 TYR L 174 SER L 183 -1 O LEU L 180 N VAL L 133 SHEET 4 AC3 4 SER L 160 VAL L 164 -1 N SER L 163 O SER L 177 SHEET 1 AC4 4 ALA L 154 LEU L 155 0 SHEET 2 AC4 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AC4 4 VAL L 192 THR L 198 -1 O ALA L 194 N LYS L 150 SHEET 4 AC4 4 VAL L 206 ASN L 211 -1 O LYS L 208 N CYS L 195 SSBOND 1 CYS C 25 CYS C 99 1555 1555 2.03 SSBOND 2 CYS C 154 CYS C 210 1555 1555 2.04 SSBOND 3 CYS D 24 CYS D 89 1555 1555 2.08 SSBOND 4 CYS D 135 CYS D 195 1555 1555 2.03 SSBOND 5 CYS H 25 CYS H 99 1555 1555 2.04 SSBOND 6 CYS H 154 CYS H 210 1555 1555 2.05 SSBOND 7 CYS L 24 CYS L 89 1555 1555 2.07 SSBOND 8 CYS L 135 CYS L 195 1555 1555 2.02 CISPEP 1 PHE C 160 PRO C 161 0 -7.89 CISPEP 2 GLU C 162 PRO C 163 0 -1.18 CISPEP 3 SER D 8 PRO D 9 0 -2.39 CISPEP 4 ARG D 95 PRO D 96 0 -7.46 CISPEP 5 TYR D 141 PRO D 142 0 5.02 CISPEP 6 PHE H 160 PRO H 161 0 -6.98 CISPEP 7 GLU H 162 PRO H 163 0 -1.91 CISPEP 8 SER L 8 PRO L 9 0 0.55 CISPEP 9 ARG L 95 PRO L 96 0 -7.70 CISPEP 10 TYR L 141 PRO L 142 0 4.75 CRYST1 85.603 79.382 106.067 90.00 111.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011682 0.000000 0.004607 0.00000 SCALE2 0.000000 0.012597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010135 0.00000