HEADER PEPTIDE BINDING PROTEIN 26-JUN-20 6XKB TITLE CRYSTAL STRUCTURE OF SR-RELATED AND CTD-ASSOCIATED FACTOR 4(SCAF4- TITLE 2 CID)WITH PEPTIDE S2,S5P-CTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SR-RELATED AND CTD-ASSOCIATED FACTOR 4; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: CTD-BINDING SR-LIKE PROTEIN RA4,SPLICING FACTOR, COMPND 5 ARGININE/SERINE-RICH 15; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: S2,S5P-CTD PEPTIDE; COMPND 9 CHAIN: F, G, I, J, K; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCAF4, KIAA1172, SFRS15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: -V2R-PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS SCAF4-CID, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.Q.ZHOU,A.DONG,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 3 18-OCT-23 6XKB 1 REMARK REVDAT 2 02-FEB-22 6XKB 1 JRNL REVDAT 1 20-JAN-21 6XKB 0 JRNL AUTH M.ZHOU,F.EHSAN,L.GAN,A.DONG,Y.LI,K.LIU,J.MIN JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF THE S2, JRNL TITL 2 S5-PHOSPHORYLATED RNA POLYMERASE II CTD BY THE MRNA JRNL TITL 3 ANTI-TERMINATOR PROTEIN HSCAF4. JRNL REF FEBS LETT. V. 596 249 2022 JRNL REFN ISSN 0014-5793 JRNL PMID 34897689 JRNL DOI 10.1002/1873-3468.14256 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 112199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2347 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8180 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5965 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.802 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6191 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5789 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8430 ; 1.452 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13438 ; 1.411 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 765 ; 5.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;33.935 ;22.369 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1035 ;12.626 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 843 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6680 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1231 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6XKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3D9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M NH4OAC, 0.1 M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.46150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 136 REMARK 465 GLY A 137 REMARK 465 THR A 138 REMARK 465 SER A 139 REMARK 465 THR B 138 REMARK 465 SER B 139 REMARK 465 SER C 139 REMARK 465 GLY D 0 REMARK 465 ALA D 136 REMARK 465 GLY D 137 REMARK 465 THR D 138 REMARK 465 SER D 139 REMARK 465 GLY E 137 REMARK 465 THR E 138 REMARK 465 SER E 139 REMARK 465 BTN F 0 REMARK 465 SEP F 15 REMARK 465 PRO F 16 REMARK 465 SER F 17 REMARK 465 TYR F 18 REMARK 465 SER F 19 REMARK 465 BTN G 0 REMARK 465 SEP G 15 REMARK 465 PRO G 16 REMARK 465 SER G 17 REMARK 465 TYR G 18 REMARK 465 SER G 19 REMARK 465 SEP I 15 REMARK 465 PRO I 16 REMARK 465 SER I 17 REMARK 465 TYR I 18 REMARK 465 SER I 19 REMARK 465 BTN J 0 REMARK 465 SEP J 15 REMARK 465 PRO J 16 REMARK 465 SER J 17 REMARK 465 TYR J 18 REMARK 465 SER J 19 REMARK 465 SEP K 15 REMARK 465 PRO K 16 REMARK 465 SER K 17 REMARK 465 TYR K 18 REMARK 465 SER K 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 35 CE NZ REMARK 470 LYS A 38 CE NZ REMARK 470 LYS A 49 CE NZ REMARK 470 LYS A 53 NZ REMARK 470 LYS A 81 CE NZ REMARK 470 LYS A 119 CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LYS B 35 CE NZ REMARK 470 LYS B 38 CD CE NZ REMARK 470 LYS B 49 CE NZ REMARK 470 LYS B 53 NZ REMARK 470 LYS B 55 CE NZ REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 LYS B 81 CE NZ REMARK 470 LYS B 90 CE NZ REMARK 470 SER B 104 OG REMARK 470 GLU B 105 OE1 OE2 REMARK 470 LYS B 119 CE NZ REMARK 470 LYS B 124 CE NZ REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 ASP C 2 CG OD1 OD2 REMARK 470 GLN C 9 CD OE1 NE2 REMARK 470 ILE C 21 CD1 REMARK 470 LYS C 38 CD CE NZ REMARK 470 LYS C 49 NZ REMARK 470 LYS C 52 CE NZ REMARK 470 LYS C 53 CD CE NZ REMARK 470 LYS C 55 CD CE NZ REMARK 470 LYS C 81 CE NZ REMARK 470 SER C 104 OG REMARK 470 GLU C 105 CD OE1 OE2 REMARK 470 LYS C 119 CD CE NZ REMARK 470 LYS C 124 CE NZ REMARK 470 GLU C 126 CG CD OE1 OE2 REMARK 470 THR C 138 OG1 CG2 REMARK 470 ASP D 2 CG OD1 OD2 REMARK 470 GLN D 9 CD OE1 NE2 REMARK 470 LYS D 18 CG CD CE NZ REMARK 470 ILE D 21 CD1 REMARK 470 LYS D 35 CE NZ REMARK 470 LYS D 38 CD CE NZ REMARK 470 LYS D 49 CD CE NZ REMARK 470 LYS D 52 CE NZ REMARK 470 LYS D 53 CE NZ REMARK 470 LYS D 55 CE NZ REMARK 470 ASP D 80 CG OD1 OD2 REMARK 470 LYS D 81 CG CD CE NZ REMARK 470 LYS D 107 CD CE NZ REMARK 470 LYS D 119 CD CE NZ REMARK 470 LYS D 124 CD CE NZ REMARK 470 ILE D 125 CD1 REMARK 470 GLN E 9 CD OE1 NE2 REMARK 470 LYS E 18 CD CE NZ REMARK 470 LYS E 35 CE NZ REMARK 470 LYS E 38 CD CE NZ REMARK 470 LYS E 52 NZ REMARK 470 LYS E 53 CE NZ REMARK 470 LYS E 55 CE NZ REMARK 470 LYS E 81 CE NZ REMARK 470 LYS E 90 CE NZ REMARK 470 GLU E 105 CD OE1 OE2 REMARK 470 LYS E 107 CD CE NZ REMARK 470 GLN E 118 CD OE1 NE2 REMARK 470 LYS E 119 CD CE NZ REMARK 470 LYS E 124 CD CE NZ REMARK 470 SER F 1 OG REMARK 470 THR F 14 OG1 CG2 REMARK 470 THR G 14 OG1 CG2 REMARK 470 THR I 14 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 399 O HOH A 438 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU D 39 44.81 -108.69 REMARK 500 PRO G 13 100.71 -50.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 6XKB A 1 139 UNP O95104 SCAF4_HUMAN 1 139 DBREF 6XKB B 1 139 UNP O95104 SCAF4_HUMAN 1 139 DBREF 6XKB C 1 139 UNP O95104 SCAF4_HUMAN 1 139 DBREF 6XKB D 1 139 UNP O95104 SCAF4_HUMAN 1 139 DBREF 6XKB E 1 139 UNP O95104 SCAF4_HUMAN 1 139 DBREF 6XKB F 0 19 PDB 6XKB 6XKB 0 19 DBREF 6XKB G 0 19 PDB 6XKB 6XKB 0 19 DBREF 6XKB I 0 19 PDB 6XKB 6XKB 0 19 DBREF 6XKB J 0 19 PDB 6XKB 6XKB 0 19 DBREF 6XKB K 0 19 PDB 6XKB 6XKB 0 19 SEQADV 6XKB GLY A 0 UNP O95104 EXPRESSION TAG SEQADV 6XKB GLY B 0 UNP O95104 EXPRESSION TAG SEQADV 6XKB GLY C 0 UNP O95104 EXPRESSION TAG SEQADV 6XKB GLY D 0 UNP O95104 EXPRESSION TAG SEQADV 6XKB GLY E 0 UNP O95104 EXPRESSION TAG SEQRES 1 A 140 GLY MET ASP ALA VAL ASN ALA PHE ASN GLN GLU LEU PHE SEQRES 2 A 140 SER LEU MET ASP MET LYS PRO PRO ILE SER ARG ALA LYS SEQRES 3 A 140 MET ILE LEU ILE THR LYS ALA ALA ILE LYS ALA ILE LYS SEQRES 4 A 140 LEU TYR LYS HIS VAL VAL GLN ILE VAL GLU LYS PHE ILE SEQRES 5 A 140 LYS LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR SEQRES 6 A 140 VAL ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE SEQRES 7 A 140 GLY THR ASP LYS ASP VAL PHE GLY PRO ARG PHE SER LYS SEQRES 8 A 140 ASN ILE THR ALA THR PHE GLN TYR LEU TYR LEU CYS PRO SEQRES 9 A 140 SER GLU ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU SEQRES 10 A 140 TRP GLN LYS ASN GLY VAL PHE LYS ILE GLU ILE ILE GLN SEQRES 11 A 140 PRO LEU LEU ASP MET ALA ALA GLY THR SER SEQRES 1 B 140 GLY MET ASP ALA VAL ASN ALA PHE ASN GLN GLU LEU PHE SEQRES 2 B 140 SER LEU MET ASP MET LYS PRO PRO ILE SER ARG ALA LYS SEQRES 3 B 140 MET ILE LEU ILE THR LYS ALA ALA ILE LYS ALA ILE LYS SEQRES 4 B 140 LEU TYR LYS HIS VAL VAL GLN ILE VAL GLU LYS PHE ILE SEQRES 5 B 140 LYS LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR SEQRES 6 B 140 VAL ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE SEQRES 7 B 140 GLY THR ASP LYS ASP VAL PHE GLY PRO ARG PHE SER LYS SEQRES 8 B 140 ASN ILE THR ALA THR PHE GLN TYR LEU TYR LEU CYS PRO SEQRES 9 B 140 SER GLU ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU SEQRES 10 B 140 TRP GLN LYS ASN GLY VAL PHE LYS ILE GLU ILE ILE GLN SEQRES 11 B 140 PRO LEU LEU ASP MET ALA ALA GLY THR SER SEQRES 1 C 140 GLY MET ASP ALA VAL ASN ALA PHE ASN GLN GLU LEU PHE SEQRES 2 C 140 SER LEU MET ASP MET LYS PRO PRO ILE SER ARG ALA LYS SEQRES 3 C 140 MET ILE LEU ILE THR LYS ALA ALA ILE LYS ALA ILE LYS SEQRES 4 C 140 LEU TYR LYS HIS VAL VAL GLN ILE VAL GLU LYS PHE ILE SEQRES 5 C 140 LYS LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR SEQRES 6 C 140 VAL ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE SEQRES 7 C 140 GLY THR ASP LYS ASP VAL PHE GLY PRO ARG PHE SER LYS SEQRES 8 C 140 ASN ILE THR ALA THR PHE GLN TYR LEU TYR LEU CYS PRO SEQRES 9 C 140 SER GLU ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU SEQRES 10 C 140 TRP GLN LYS ASN GLY VAL PHE LYS ILE GLU ILE ILE GLN SEQRES 11 C 140 PRO LEU LEU ASP MET ALA ALA GLY THR SER SEQRES 1 D 140 GLY MET ASP ALA VAL ASN ALA PHE ASN GLN GLU LEU PHE SEQRES 2 D 140 SER LEU MET ASP MET LYS PRO PRO ILE SER ARG ALA LYS SEQRES 3 D 140 MET ILE LEU ILE THR LYS ALA ALA ILE LYS ALA ILE LYS SEQRES 4 D 140 LEU TYR LYS HIS VAL VAL GLN ILE VAL GLU LYS PHE ILE SEQRES 5 D 140 LYS LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR SEQRES 6 D 140 VAL ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE SEQRES 7 D 140 GLY THR ASP LYS ASP VAL PHE GLY PRO ARG PHE SER LYS SEQRES 8 D 140 ASN ILE THR ALA THR PHE GLN TYR LEU TYR LEU CYS PRO SEQRES 9 D 140 SER GLU ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU SEQRES 10 D 140 TRP GLN LYS ASN GLY VAL PHE LYS ILE GLU ILE ILE GLN SEQRES 11 D 140 PRO LEU LEU ASP MET ALA ALA GLY THR SER SEQRES 1 E 140 GLY MET ASP ALA VAL ASN ALA PHE ASN GLN GLU LEU PHE SEQRES 2 E 140 SER LEU MET ASP MET LYS PRO PRO ILE SER ARG ALA LYS SEQRES 3 E 140 MET ILE LEU ILE THR LYS ALA ALA ILE LYS ALA ILE LYS SEQRES 4 E 140 LEU TYR LYS HIS VAL VAL GLN ILE VAL GLU LYS PHE ILE SEQRES 5 E 140 LYS LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR SEQRES 6 E 140 VAL ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE SEQRES 7 E 140 GLY THR ASP LYS ASP VAL PHE GLY PRO ARG PHE SER LYS SEQRES 8 E 140 ASN ILE THR ALA THR PHE GLN TYR LEU TYR LEU CYS PRO SEQRES 9 E 140 SER GLU ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU SEQRES 10 E 140 TRP GLN LYS ASN GLY VAL PHE LYS ILE GLU ILE ILE GLN SEQRES 11 E 140 PRO LEU LEU ASP MET ALA ALA GLY THR SER SEQRES 1 F 20 BTN SER PRO SER TYR SEP PRO THR SEP PRO SER TYR SEP SEQRES 2 F 20 PRO THR SEP PRO SER TYR SER SEQRES 1 G 20 BTN SER PRO SER TYR SEP PRO THR SEP PRO SER TYR SEP SEQRES 2 G 20 PRO THR SEP PRO SER TYR SER SEQRES 1 I 20 BTN SER PRO SER TYR SEP PRO THR SEP PRO SER TYR SEP SEQRES 2 I 20 PRO THR SEP PRO SER TYR SER SEQRES 1 J 20 BTN SER PRO SER TYR SEP PRO THR SEP PRO SER TYR SEP SEQRES 2 J 20 PRO THR SEP PRO SER TYR SER SEQRES 1 K 20 BTN SER PRO SER TYR SEP PRO THR SEP PRO SER TYR SEP SEQRES 2 K 20 PRO THR SEP PRO SER TYR SER HET SEP F 5 10 HET SEP F 8 10 HET SEP F 12 10 HET SEP G 5 10 HET SEP G 8 10 HET SEP G 12 10 HET BTN I 0 15 HET SEP I 5 10 HET SEP I 8 10 HET SEP I 12 10 HET SEP J 5 10 HET SEP J 8 10 HET SEP J 12 10 HET BTN K 0 15 HET SEP K 5 10 HET SEP K 8 10 HET SEP K 12 10 HET UNX A 201 1 HET UNX B 201 1 HET UNX C 201 1 HET UNX C 202 1 HET UNX C 203 1 HET UNX D 201 1 HET UNX D 202 1 HET UNX E 201 1 HET UNX F 101 1 HET UNX K1001 1 HET UNX K1002 1 HET UNX K1003 1 HETNAM SEP PHOSPHOSERINE HETNAM BTN BIOTIN HETNAM UNX UNKNOWN ATOM OR ION HETSYN SEP PHOSPHONOSERINE FORMUL 6 SEP 15(C3 H8 N O6 P) FORMUL 8 BTN 2(C10 H16 N2 O3 S) FORMUL 11 UNX 12(X) FORMUL 23 HOH *660(H2 O) HELIX 1 AA1 GLY A 0 SER A 13 1 14 HELIX 2 AA2 LEU A 14 MET A 17 5 4 HELIX 3 AA3 SER A 22 ALA A 36 1 15 HELIX 4 AA4 LEU A 39 CYS A 54 1 16 HELIX 5 AA5 LYS A 55 GLU A 57 5 3 HELIX 6 AA6 TYR A 58 GLY A 78 1 21 HELIX 7 AA7 VAL A 83 LYS A 90 1 8 HELIX 8 AA8 ASN A 91 TYR A 100 1 10 HELIX 9 AA9 LEU A 101 CYS A 102 5 2 HELIX 10 AB1 PRO A 103 GLU A 105 5 3 HELIX 11 AB2 ASP A 106 ASN A 120 1 15 HELIX 12 AB3 LYS A 124 ALA A 135 1 12 HELIX 13 AB4 MET B 1 SER B 13 1 13 HELIX 14 AB5 LEU B 14 MET B 17 5 4 HELIX 15 AB6 SER B 22 ALA B 36 1 15 HELIX 16 AB7 LEU B 39 CYS B 54 1 16 HELIX 17 AB8 LYS B 55 GLU B 57 5 3 HELIX 18 AB9 TYR B 58 GLY B 78 1 21 HELIX 19 AC1 VAL B 83 LYS B 90 1 8 HELIX 20 AC2 ASN B 91 TYR B 100 1 10 HELIX 21 AC3 LEU B 101 CYS B 102 5 2 HELIX 22 AC4 PRO B 103 GLU B 105 5 3 HELIX 23 AC5 ASP B 106 ASN B 120 1 15 HELIX 24 AC6 LYS B 124 MET B 134 1 11 HELIX 25 AC7 MET C 1 SER C 13 1 13 HELIX 26 AC8 LEU C 14 MET C 17 5 4 HELIX 27 AC9 SER C 22 ALA C 36 1 15 HELIX 28 AD1 LEU C 39 CYS C 54 1 16 HELIX 29 AD2 LYS C 55 GLU C 57 5 3 HELIX 30 AD3 TYR C 58 GLY C 78 1 21 HELIX 31 AD4 VAL C 83 LYS C 90 1 8 HELIX 32 AD5 ASN C 91 TYR C 100 1 10 HELIX 33 AD6 LEU C 101 CYS C 102 5 2 HELIX 34 AD7 PRO C 103 GLU C 105 5 3 HELIX 35 AD8 ASP C 106 ASN C 120 1 15 HELIX 36 AD9 LYS C 124 MET C 134 1 11 HELIX 37 AE1 ASP D 2 SER D 13 1 12 HELIX 38 AE2 LEU D 14 MET D 17 5 4 HELIX 39 AE3 SER D 22 ALA D 36 1 15 HELIX 40 AE4 LEU D 39 CYS D 54 1 16 HELIX 41 AE5 LYS D 55 GLU D 57 5 3 HELIX 42 AE6 TYR D 58 GLY D 78 1 21 HELIX 43 AE7 VAL D 83 LYS D 90 1 8 HELIX 44 AE8 ASN D 91 TYR D 100 1 10 HELIX 45 AE9 LEU D 101 CYS D 102 5 2 HELIX 46 AF1 PRO D 103 GLU D 105 5 3 HELIX 47 AF2 ASP D 106 ASN D 120 1 15 HELIX 48 AF3 LYS D 124 ALA D 135 1 12 HELIX 49 AF4 MET E 1 SER E 13 1 13 HELIX 50 AF5 LEU E 14 MET E 17 5 4 HELIX 51 AF6 SER E 22 ALA E 36 1 15 HELIX 52 AF7 LEU E 39 CYS E 54 1 16 HELIX 53 AF8 LYS E 55 GLU E 57 5 3 HELIX 54 AF9 TYR E 58 GLY E 78 1 21 HELIX 55 AG1 VAL E 83 LYS E 90 1 8 HELIX 56 AG2 ASN E 91 TYR E 100 1 10 HELIX 57 AG3 LEU E 101 CYS E 102 5 2 HELIX 58 AG4 PRO E 103 GLU E 105 5 3 HELIX 59 AG5 ASP E 106 ASN E 120 1 15 HELIX 60 AG6 LYS E 124 ALA E 136 1 13 LINK C TYR F 4 N SEP F 5 1555 1555 1.33 LINK C SEP F 5 N PRO F 6 1555 1555 1.35 LINK C THR F 7 N SEP F 8 1555 1555 1.34 LINK C SEP F 8 N PRO F 9 1555 1555 1.35 LINK C TYR F 11 N SEP F 12 1555 1555 1.34 LINK C SEP F 12 N PRO F 13 1555 1555 1.35 LINK C TYR G 4 N SEP G 5 1555 1555 1.34 LINK C SEP G 5 N PRO G 6 1555 1555 1.35 LINK C THR G 7 N SEP G 8 1555 1555 1.33 LINK C SEP G 8 N PRO G 9 1555 1555 1.35 LINK C TYR G 11 N SEP G 12 1555 1555 1.34 LINK C SEP G 12 N PRO G 13 1555 1555 1.36 LINK C11 BTN I 0 N SER I 1 1555 1555 1.36 LINK C TYR I 4 N SEP I 5 1555 1555 1.34 LINK C SEP I 5 N PRO I 6 1555 1555 1.35 LINK C THR I 7 N SEP I 8 1555 1555 1.33 LINK C SEP I 8 N PRO I 9 1555 1555 1.35 LINK C TYR I 11 N SEP I 12 1555 1555 1.34 LINK C SEP I 12 N PRO I 13 1555 1555 1.35 LINK C TYR J 4 N SEP J 5 1555 1555 1.34 LINK C SEP J 5 N PRO J 6 1555 1555 1.35 LINK C THR J 7 N SEP J 8 1555 1555 1.34 LINK C SEP J 8 N PRO J 9 1555 1555 1.35 LINK C TYR J 11 N SEP J 12 1555 1555 1.34 LINK C SEP J 12 N PRO J 13 1555 1555 1.35 LINK C11 BTN K 0 N SER K 1 1555 1555 1.35 LINK C TYR K 4 N SEP K 5 1555 1555 1.34 LINK C SEP K 5 N PRO K 6 1555 1555 1.36 LINK C THR K 7 N SEP K 8 1555 1555 1.34 LINK C SEP K 8 N PRO K 9 1555 1555 1.35 LINK C TYR K 11 N SEP K 12 1555 1555 1.33 LINK C SEP K 12 N PRO K 13 1555 1555 1.35 CISPEP 1 PRO A 19 PRO A 20 0 -0.12 CISPEP 2 PRO B 19 PRO B 20 0 1.88 CISPEP 3 PRO C 19 PRO C 20 0 8.39 CISPEP 4 PRO D 19 PRO D 20 0 -3.92 CISPEP 5 PRO E 19 PRO E 20 0 1.94 CRYST1 70.718 46.923 139.250 90.00 92.30 90.00 P 1 21 1 10 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014141 0.000000 0.000568 0.00000 SCALE2 0.000000 0.021312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007187 0.00000