HEADER HYDROLASE 26-JUN-20 6XKF TITLE THE CRYSTAL STRUCTURE OF 3CL MAINPRO OF SARS-COV-2 WITH OXIDIZED TITLE 2 CYS145 (SULFENIC ACID CYSTEINE). COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.69; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, 3CL MAIN PROTEASE, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,N.I.MALTSEVA,L.F.WELK,R.P.JEDRZEJCZAK,L.COATES,A.Y.KOVALEVSKYI, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 18-OCT-23 6XKF 1 REMARK REVDAT 1 08-JUL-20 6XKF 0 JRNL AUTH K.TAN,N.I.MALTSEVA,L.F.WELK,R.P.JEDRZEJCZAK,L.COATES, JRNL AUTH 2 A.Y.KOVALEVSKYI,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF 3CL MAINPRO OF SARS-COV-2 WITH JRNL TITL 2 OXIDIZED CYS145 (SULFENIC ACID CYSTEINE). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 47849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7200 - 4.6400 0.91 2639 134 0.1551 0.1707 REMARK 3 2 4.6400 - 3.6800 0.95 2673 154 0.1396 0.1789 REMARK 3 3 3.6800 - 3.2200 0.93 2605 114 0.1815 0.2088 REMARK 3 4 3.2200 - 2.9200 0.96 2722 114 0.1984 0.2634 REMARK 3 5 2.9200 - 2.7100 0.98 2666 209 0.2023 0.2694 REMARK 3 6 2.7100 - 2.5500 0.98 2751 154 0.2129 0.2890 REMARK 3 7 2.5500 - 2.4200 0.96 2665 132 0.2175 0.2588 REMARK 3 8 2.4200 - 2.3200 0.97 2704 157 0.2110 0.2791 REMARK 3 9 2.3200 - 2.2300 0.98 2656 187 0.2053 0.3204 REMARK 3 10 2.2300 - 2.1500 0.98 2723 118 0.2150 0.3081 REMARK 3 11 2.1500 - 2.0900 0.98 2758 141 0.2266 0.2723 REMARK 3 12 2.0900 - 2.0300 0.98 2712 143 0.2358 0.3125 REMARK 3 13 2.0300 - 1.9700 0.98 2740 124 0.2459 0.3557 REMARK 3 14 1.9700 - 1.9200 0.95 2637 137 0.2504 0.2901 REMARK 3 15 1.9200 - 1.8800 0.95 2635 149 0.2750 0.3553 REMARK 3 16 1.8800 - 1.8400 0.96 2631 147 0.2866 0.3027 REMARK 3 17 1.8400 - 1.8000 0.90 2497 121 0.3077 0.3722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4914 REMARK 3 ANGLE : 0.864 6683 REMARK 3 CHIRALITY : 0.052 750 REMARK 3 PLANARITY : 0.006 872 REMARK 3 DIHEDRAL : 18.943 1772 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9472 12.6436 42.9211 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.2723 REMARK 3 T33: 0.2661 T12: -0.0235 REMARK 3 T13: 0.0595 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.5004 L22: 2.7298 REMARK 3 L33: 2.9428 L12: 0.8796 REMARK 3 L13: 1.6934 L23: 0.9980 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: 0.1702 S13: 0.0843 REMARK 3 S21: -0.0845 S22: 0.0617 S23: -0.2294 REMARK 3 S31: -0.0902 S32: 0.2915 S33: 0.0434 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0904 6.3491 40.4787 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.2758 REMARK 3 T33: 0.2692 T12: -0.0045 REMARK 3 T13: 0.0069 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 1.2796 L22: 5.2236 REMARK 3 L33: 1.9830 L12: 0.5771 REMARK 3 L13: 0.9478 L23: 0.6740 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.1174 S13: 0.0107 REMARK 3 S21: -0.1956 S22: 0.0764 S23: 0.3343 REMARK 3 S31: 0.0342 S32: -0.0878 S33: -0.0892 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9362 -4.5433 44.1635 REMARK 3 T TENSOR REMARK 3 T11: 0.2273 T22: 0.2123 REMARK 3 T33: 0.2302 T12: -0.0042 REMARK 3 T13: 0.0222 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.0287 L22: 1.6591 REMARK 3 L33: 1.0340 L12: 1.9788 REMARK 3 L13: 1.4342 L23: 0.9117 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: -0.0059 S13: -0.2321 REMARK 3 S21: 0.1112 S22: -0.0414 S23: -0.2268 REMARK 3 S31: 0.0910 S32: -0.0457 S33: -0.1002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2232 -23.3000 40.0467 REMARK 3 T TENSOR REMARK 3 T11: 0.2447 T22: 0.2652 REMARK 3 T33: 0.3077 T12: -0.0629 REMARK 3 T13: 0.0259 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 3.5670 L22: 3.7622 REMARK 3 L33: 4.6248 L12: 0.8924 REMARK 3 L13: -0.5386 L23: 0.7391 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.0237 S13: -0.2947 REMARK 3 S21: 0.2164 S22: -0.0065 S23: 0.1778 REMARK 3 S31: 0.3381 S32: -0.4899 S33: -0.0138 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1753 -12.6580 43.8185 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.2311 REMARK 3 T33: 0.2573 T12: -0.0891 REMARK 3 T13: 0.0193 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 7.2241 L22: 7.8433 REMARK 3 L33: 6.0657 L12: -5.2863 REMARK 3 L13: 0.8834 L23: -0.3310 REMARK 3 S TENSOR REMARK 3 S11: -0.4866 S12: -0.3708 S13: 0.3943 REMARK 3 S21: 0.1843 S22: 0.3764 S23: 0.1062 REMARK 3 S31: -0.2931 S32: -0.5288 S33: 0.1009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8086 -13.1310 34.4990 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.3160 REMARK 3 T33: 0.1926 T12: -0.0576 REMARK 3 T13: -0.0076 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 4.7048 L22: 6.3609 REMARK 3 L33: 3.2791 L12: -0.7031 REMARK 3 L13: -0.3782 L23: 1.3685 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: 0.1839 S13: 0.2328 REMARK 3 S21: -0.3895 S22: -0.1771 S23: -0.0745 REMARK 3 S31: -0.2374 S32: 0.0086 S33: 0.0843 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3307 9.9957 15.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 0.2911 REMARK 3 T33: 0.3079 T12: 0.0535 REMARK 3 T13: -0.0361 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.3886 L22: 2.2188 REMARK 3 L33: 4.2335 L12: 0.4094 REMARK 3 L13: 1.9179 L23: 0.9440 REMARK 3 S TENSOR REMARK 3 S11: -0.3491 S12: -0.2832 S13: 0.2691 REMARK 3 S21: -0.1391 S22: 0.0137 S23: 0.2862 REMARK 3 S31: -0.6555 S32: -0.5450 S33: 0.2477 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8830 -3.9389 12.5749 REMARK 3 T TENSOR REMARK 3 T11: 0.2307 T22: 0.2601 REMARK 3 T33: 0.1697 T12: -0.0109 REMARK 3 T13: 0.0249 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 4.5932 L22: 3.0353 REMARK 3 L33: 1.3637 L12: -2.0576 REMARK 3 L13: 1.9646 L23: -0.9261 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: -0.0609 S13: -0.1426 REMARK 3 S21: -0.1778 S22: -0.1003 S23: 0.2684 REMARK 3 S31: 0.0651 S32: -0.0677 S33: -0.0470 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 215 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0393 -15.3729 17.8992 REMARK 3 T TENSOR REMARK 3 T11: 0.2507 T22: 0.3224 REMARK 3 T33: 0.3300 T12: 0.0411 REMARK 3 T13: -0.0126 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 7.2017 L22: 4.1719 REMARK 3 L33: 4.7213 L12: 1.2962 REMARK 3 L13: 1.2033 L23: -0.1090 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.1479 S13: -0.8353 REMARK 3 S21: 0.0174 S22: 0.0347 S23: -0.1958 REMARK 3 S31: 0.3287 S32: 0.2486 S33: -0.0984 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48010 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 6YB7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M AMMONIUM SULFATE,0.1M TRIS,15% REMARK 280 PEG4000, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.89550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 240 O HOH B 501 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -128.66 53.10 REMARK 500 ASN A 51 71.85 -160.17 REMARK 500 ASN A 84 -122.10 52.25 REMARK 500 TYR A 154 -90.92 59.36 REMARK 500 SER A 301 -41.81 -146.07 REMARK 500 ASP B 33 -125.64 50.54 REMARK 500 ASN B 51 73.84 -156.41 REMARK 500 ASN B 84 -116.30 47.36 REMARK 500 TYR B 154 -89.72 75.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 DBREF 6XKF A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 6XKF B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CSX GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CSX GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN MODRES 6XKF CSX A 145 CYS MODIFIED RESIDUE MODRES 6XKF CSX B 145 CYS MODIFIED RESIDUE HET CSX A 145 7 HET CSX B 145 7 HET EDO A 401 4 HET CL A 402 1 HET EDO B 401 4 HETNAM CSX S-OXY CYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 CL CL 1- FORMUL 6 HOH *138(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 GLU A 47 ASN A 51 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 SER A 62 HIS A 64 5 3 HELIX 6 AA6 ILE A 200 ASN A 214 1 15 HELIX 7 AA7 THR A 226 TYR A 237 1 12 HELIX 8 AA8 THR A 243 LEU A 250 1 8 HELIX 9 AA9 LEU A 250 GLY A 258 1 9 HELIX 10 AB1 ALA A 260 GLY A 275 1 16 HELIX 11 AB2 THR A 292 CYS A 300 1 9 HELIX 12 AB3 SER B 10 GLY B 15 1 6 HELIX 13 AB4 HIS B 41 CYS B 44 5 4 HELIX 14 AB5 GLU B 47 ASN B 51 5 5 HELIX 15 AB6 ASN B 53 ARG B 60 1 8 HELIX 16 AB7 SER B 62 HIS B 64 5 3 HELIX 17 AB8 ILE B 200 ASN B 214 1 15 HELIX 18 AB9 THR B 226 TYR B 237 1 12 HELIX 19 AC1 THR B 243 LEU B 250 1 8 HELIX 20 AC2 LEU B 250 GLY B 258 1 9 HELIX 21 AC3 ALA B 260 GLY B 275 1 16 HELIX 22 AC4 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O CYS A 128 N PHE A 112 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 GLN B 74 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O VAL B 35 N LEU B 32 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N GLN B 83 O VAL B 86 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK C SER A 144 N CSX A 145 1555 1555 1.33 LINK C CSX A 145 N GLY A 146 1555 1555 1.33 LINK C SER B 144 N CSX B 145 1555 1555 1.34 LINK C CSX B 145 N GLY B 146 1555 1555 1.34 SITE 1 AC1 3 PHE A 140 CSX A 145 HIS A 163 SITE 1 AC2 2 LYS A 5 EDO B 401 SITE 1 AC3 4 CL A 402 ARG B 4 LYS B 5 HOH B 515 CRYST1 44.878 53.791 115.261 90.00 100.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022283 0.000000 0.004321 0.00000 SCALE2 0.000000 0.018590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008838 0.00000