HEADER DNA BINDING PROTEIN/RNA 27-JUN-20 6XL1 TITLE CRYSTAL STRUCTURE OF CA4-ACTIVATED CARD1(D294N) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARD1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CA4; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA SUCCINIFACIENS DSM 2489; SOURCE 3 ORGANISM_TAXID: 869209; SOURCE 4 STRAIN: ATCC 33096 / DSM 2489 / 6091; SOURCE 5 GENE: TRESU_2185; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS CAD1, DNASE, CYCLIC OLIGOADENYLATES, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ROSTOL,W.XIE,D.J.PATEL,L.MARRAFFINI REVDAT 6 18-OCT-23 6XL1 1 REMARK REVDAT 5 10-MAR-21 6XL1 1 JRNL REVDAT 4 17-FEB-21 6XL1 1 JRNL REVDAT 3 10-FEB-21 6XL1 1 JRNL REVDAT 2 20-JAN-21 6XL1 1 TITLE COMPND JRNL REVDAT 1 30-DEC-20 6XL1 0 JRNL AUTH J.T.ROSTOL,W.XIE,V.KURYAVYI,P.MAGUIN,K.KAO,R.FROOM, JRNL AUTH 2 D.J.PATEL,L.A.MARRAFFINI JRNL TITL THE CARD1 NUCLEASE PROVIDES DEFENCE DURING TYPE III CRISPR JRNL TITL 2 IMMUNITY. JRNL REF NATURE V. 590 624 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 33461211 JRNL DOI 10.1038/S41586-021-03206-X REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3855 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 80121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5800 - 5.9800 1.00 2876 165 0.1729 0.1857 REMARK 3 2 5.9800 - 4.7500 1.00 2721 150 0.1721 0.1825 REMARK 3 3 4.7500 - 4.1500 1.00 2713 118 0.1414 0.1515 REMARK 3 4 4.1500 - 3.7700 1.00 2671 138 0.1584 0.1737 REMARK 3 5 3.7700 - 3.5000 1.00 2655 149 0.1678 0.1660 REMARK 3 6 3.5000 - 3.3000 1.00 2628 146 0.1712 0.1926 REMARK 3 7 3.3000 - 3.1300 1.00 2667 116 0.1801 0.2152 REMARK 3 8 3.1300 - 3.0000 1.00 2654 132 0.1879 0.2110 REMARK 3 9 3.0000 - 2.8800 1.00 2600 142 0.2020 0.2556 REMARK 3 10 2.8800 - 2.7800 1.00 2601 168 0.1912 0.2207 REMARK 3 11 2.7800 - 2.6900 1.00 2613 141 0.2011 0.2200 REMARK 3 12 2.6900 - 2.6200 1.00 2601 161 0.2000 0.2252 REMARK 3 13 2.6200 - 2.5500 1.00 2573 148 0.1980 0.2384 REMARK 3 14 2.5500 - 2.4900 1.00 2635 130 0.1947 0.2103 REMARK 3 15 2.4900 - 2.4300 1.00 2611 125 0.2002 0.2498 REMARK 3 16 2.4300 - 2.3800 1.00 2623 146 0.1971 0.2479 REMARK 3 17 2.3800 - 2.3300 1.00 2574 136 0.1920 0.2187 REMARK 3 18 2.3300 - 2.2900 1.00 2596 139 0.1875 0.2148 REMARK 3 19 2.2900 - 2.2500 1.00 2628 129 0.1898 0.2022 REMARK 3 20 2.2500 - 2.2100 0.99 2537 133 0.1853 0.2333 REMARK 3 21 2.2100 - 2.1700 1.00 2611 142 0.1774 0.2030 REMARK 3 22 2.1700 - 2.1400 1.00 2573 140 0.1801 0.2281 REMARK 3 23 2.1400 - 2.1100 1.00 2600 125 0.1904 0.2452 REMARK 3 24 2.1100 - 2.0800 1.00 2571 147 0.1982 0.2278 REMARK 3 25 2.0800 - 2.0500 1.00 2607 129 0.1909 0.2424 REMARK 3 26 2.0500 - 2.0200 1.00 2618 132 0.1941 0.2268 REMARK 3 27 2.0200 - 2.0000 1.00 2532 142 0.1871 0.2371 REMARK 3 28 2.0000 - 1.9700 1.00 2630 113 0.1894 0.2384 REMARK 3 29 1.9700 - 1.9500 1.00 2569 151 0.1911 0.2067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.169 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6444 REMARK 3 ANGLE : 0.843 8706 REMARK 3 CHIRALITY : 0.061 946 REMARK 3 PLANARITY : 0.005 1094 REMARK 3 DIHEDRAL : 24.392 2435 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : AUTOXDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80132 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.08062 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 15.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6WWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES 7.0, 30% (V/V) JEFFAMINE M REMARK 280 -600, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.09000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.97300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.97300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.04500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.97300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.97300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 129.13500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.97300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.97300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.04500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.97300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.97300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 129.13500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.09000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 374 REMARK 465 SER A 375 REMARK 465 GLY A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 GLY B 374 REMARK 465 SER B 375 REMARK 465 GLY B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 465 HIS B 379 REMARK 465 HIS B 380 REMARK 465 HIS B 381 REMARK 465 HIS B 382 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1025 O HOH A 1205 2.06 REMARK 500 OE2 GLU A 143 O HOH A 1001 2.06 REMARK 500 OG1 THR B 173 O HOH B 501 2.11 REMARK 500 O HOH B 515 O HOH B 574 2.14 REMARK 500 OH TYR B 202 O ILE B 245 2.15 REMARK 500 OD1 ASP A 59 O HOH A 1002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1205 O HOH B 502 6554 1.96 REMARK 500 O HOH A 1191 O HOH B 578 3555 2.04 REMARK 500 O HOH A 1001 O HOH B 728 6554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 196 -74.19 -58.84 REMARK 500 ALA A 220 -8.57 -56.93 REMARK 500 ASN A 222 73.86 65.76 REMARK 500 ASP A 369 -167.07 -106.03 REMARK 500 HIS B 56 61.76 35.77 REMARK 500 MET B 141 40.17 -96.22 REMARK 500 ASP B 369 -163.93 -104.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD1 REMARK 620 2 ASP A 87 OD2 92.0 REMARK 620 3 HOH A1015 O 20.5 72.5 REMARK 620 4 ASN B 79 OD1 17.6 75.1 3.0 REMARK 620 5 ASP B 83 OD2 15.3 78.0 5.6 3.3 REMARK 620 6 HOH B 571 O 19.0 75.4 4.1 4.4 3.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 274 OD1 REMARK 620 2 HIS B 271 NE2 25.3 REMARK 620 3 HOH B 554 O 23.3 3.1 REMARK 620 4 HOH B 717 O 27.6 3.0 4.3 REMARK 620 5 HOH B 722 O 25.3 1.8 2.1 2.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 901 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 294 OD1 REMARK 620 2 GLU A 308 OE1 88.0 REMARK 620 3 CYS A 309 O 80.5 95.5 REMARK 620 4 HOH A1014 O 83.9 165.7 71.6 REMARK 620 5 HOH A1215 O 97.3 93.1 171.1 99.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 294 OD1 REMARK 620 2 GLU B 308 OE2 84.9 REMARK 620 3 CYS B 309 O 88.9 91.8 REMARK 620 4 HOH B 525 O 177.1 92.9 89.2 REMARK 620 5 HOH B 547 O 90.5 175.4 88.9 91.7 REMARK 620 6 HOH B 688 O 92.9 84.7 175.9 88.7 94.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 404 DBREF 6XL1 A 1 373 UNP F2NWD3 F2NWD3_TRES6 1 373 DBREF 6XL1 B 1 373 UNP F2NWD3 F2NWD3_TRES6 1 373 DBREF 6XL1 C 1 4 PDB 6XL1 6XL1 1 4 SEQADV 6XL1 ASN A 294 UNP F2NWD3 ASP 294 ENGINEERED MUTATION SEQADV 6XL1 GLY A 374 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 SER A 375 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 GLY A 376 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS A 377 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS A 378 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS A 379 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS A 380 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS A 381 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS A 382 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 ASN B 294 UNP F2NWD3 ASP 294 ENGINEERED MUTATION SEQADV 6XL1 GLY B 374 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 SER B 375 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 GLY B 376 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS B 377 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS B 378 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS B 379 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS B 380 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS B 381 UNP F2NWD3 EXPRESSION TAG SEQADV 6XL1 HIS B 382 UNP F2NWD3 EXPRESSION TAG SEQRES 1 A 382 MET LYS GLU THR ILE LEU VAL ASN LEU VAL SER GLU GLN SEQRES 2 A 382 THR ILE PRO ASN VAL GLN PHE ILE LYS TRP TYR PHE ASN SEQRES 3 A 382 LYS LYS GLN THR PRO MET LYS ILE LEU LEU VAL SER THR SEQRES 4 A 382 LYS GLU MET GLU GLN LYS GLU LYS SER LEU PHE ILE LYS SEQRES 5 A 382 ASN ALA LEU HIS PHE SER ASP SER PHE VAL GLU TRP GLU SEQRES 6 A 382 THR ILE HIS THR ASP GLY ASN ASP ILE SER LYS THR GLU SEQRES 7 A 382 ASN ILE LEU THR ASP TYR PHE ARG ASP ASN GLU TYR LYS SEQRES 8 A 382 ASN ILE ILE VAL ASN ILE THR GLY GLY THR LYS ILE MET SEQRES 9 A 382 SER LEU ALA ALA PHE ASP PHE PHE ASN ASN LYS PRO ASN SEQRES 10 A 382 THR GLU ILE PHE TYR GLN PRO ILE GLY LYS GLU LEU GLN SEQRES 11 A 382 GLU LEU TYR PRO ASN LYS GLN LYS TYR ASP MET PHE GLU SEQRES 12 A 382 VAL LEU SER LEU LYS GLU TYR LEU ASP ALA HIS GLY ILE SEQRES 13 A 382 SER TYR LYS TYR ASP ASN GLU CYS VAL LYS ASP TRP ASN SEQRES 14 A 382 TYR ASN LYS THR VAL TYR ASP LEU CYS VAL ALA ASP ASN SEQRES 15 A 382 ARG GLU LEU ILE LYS GLY MET ILE ALA LEU GLN ASN ASN SEQRES 16 A 382 SER TYR PHE ASN ASN VAL TYR LYS ARG LYS ASP PHE LEU SEQRES 17 A 382 ASP PHE THR GLN ILE GLU GLU GLU LYS PHE ILE ALA ILE SEQRES 18 A 382 ASN HIS PRO ALA ALA THR LYS GLU ASN MET ILE LYS ILE SEQRES 19 A 382 LEU GLN ILE PHE GLY PHE ASP VAL SER ARG ILE GLU HIS SEQRES 20 A 382 LYS HIS ILE ARG TYR ILE THR GLY GLY TRP PHE GLU GLU SEQRES 21 A 382 TYR VAL TYR GLN LYS ILE CYS ASN GLU TYR HIS ASN VAL SEQRES 22 A 382 ASP GLU LYS ASN VAL ALA LEU ASN VAL THR ILE GLN LYS SEQRES 23 A 382 GLY ASN ASP LYS ASN GLU LEU ASN VAL ILE TYR LEU ASP SEQRES 24 A 382 LYS ASP ASN LYS LEU HIS VAL ILE GLU CYS LYS SER PHE SEQRES 25 A 382 VAL ASP GLY ASN GLU GLY ASN ARG VAL LEU ASN ASP ALA SEQRES 26 A 382 LEU TYR LYS LEU GLN ALA ILE ILE LYS SER LYS PHE GLY SEQRES 27 A 382 LEU TYR VAL LYS GLN HIS LEU TYR THR LYS SER ILE ILE SEQRES 28 A 382 GLU LYS GLU THR PRO LEU ASN ARG ALA LYS GLU PHE GLY SEQRES 29 A 382 ILE ASP ILE LYS ASP GLY THR GLN LEU GLY SER GLY HIS SEQRES 30 A 382 HIS HIS HIS HIS HIS SEQRES 1 B 382 MET LYS GLU THR ILE LEU VAL ASN LEU VAL SER GLU GLN SEQRES 2 B 382 THR ILE PRO ASN VAL GLN PHE ILE LYS TRP TYR PHE ASN SEQRES 3 B 382 LYS LYS GLN THR PRO MET LYS ILE LEU LEU VAL SER THR SEQRES 4 B 382 LYS GLU MET GLU GLN LYS GLU LYS SER LEU PHE ILE LYS SEQRES 5 B 382 ASN ALA LEU HIS PHE SER ASP SER PHE VAL GLU TRP GLU SEQRES 6 B 382 THR ILE HIS THR ASP GLY ASN ASP ILE SER LYS THR GLU SEQRES 7 B 382 ASN ILE LEU THR ASP TYR PHE ARG ASP ASN GLU TYR LYS SEQRES 8 B 382 ASN ILE ILE VAL ASN ILE THR GLY GLY THR LYS ILE MET SEQRES 9 B 382 SER LEU ALA ALA PHE ASP PHE PHE ASN ASN LYS PRO ASN SEQRES 10 B 382 THR GLU ILE PHE TYR GLN PRO ILE GLY LYS GLU LEU GLN SEQRES 11 B 382 GLU LEU TYR PRO ASN LYS GLN LYS TYR ASP MET PHE GLU SEQRES 12 B 382 VAL LEU SER LEU LYS GLU TYR LEU ASP ALA HIS GLY ILE SEQRES 13 B 382 SER TYR LYS TYR ASP ASN GLU CYS VAL LYS ASP TRP ASN SEQRES 14 B 382 TYR ASN LYS THR VAL TYR ASP LEU CYS VAL ALA ASP ASN SEQRES 15 B 382 ARG GLU LEU ILE LYS GLY MET ILE ALA LEU GLN ASN ASN SEQRES 16 B 382 SER TYR PHE ASN ASN VAL TYR LYS ARG LYS ASP PHE LEU SEQRES 17 B 382 ASP PHE THR GLN ILE GLU GLU GLU LYS PHE ILE ALA ILE SEQRES 18 B 382 ASN HIS PRO ALA ALA THR LYS GLU ASN MET ILE LYS ILE SEQRES 19 B 382 LEU GLN ILE PHE GLY PHE ASP VAL SER ARG ILE GLU HIS SEQRES 20 B 382 LYS HIS ILE ARG TYR ILE THR GLY GLY TRP PHE GLU GLU SEQRES 21 B 382 TYR VAL TYR GLN LYS ILE CYS ASN GLU TYR HIS ASN VAL SEQRES 22 B 382 ASP GLU LYS ASN VAL ALA LEU ASN VAL THR ILE GLN LYS SEQRES 23 B 382 GLY ASN ASP LYS ASN GLU LEU ASN VAL ILE TYR LEU ASP SEQRES 24 B 382 LYS ASP ASN LYS LEU HIS VAL ILE GLU CYS LYS SER PHE SEQRES 25 B 382 VAL ASP GLY ASN GLU GLY ASN ARG VAL LEU ASN ASP ALA SEQRES 26 B 382 LEU TYR LYS LEU GLN ALA ILE ILE LYS SER LYS PHE GLY SEQRES 27 B 382 LEU TYR VAL LYS GLN HIS LEU TYR THR LYS SER ILE ILE SEQRES 28 B 382 GLU LYS GLU THR PRO LEU ASN ARG ALA LYS GLU PHE GLY SEQRES 29 B 382 ILE ASP ILE LYS ASP GLY THR GLN LEU GLY SER GLY HIS SEQRES 30 B 382 HIS HIS HIS HIS HIS SEQRES 1 C 4 A A A A HET MN A 901 1 HET EPE B 401 15 HET MN B 402 1 HET MN B 403 1 HET MN B 404 1 HETNAM MN MANGANESE (II) ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 4 MN 4(MN 2+) FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 9 HOH *552(H2 O) HELIX 1 AA1 THR A 14 GLN A 29 1 16 HELIX 2 AA2 THR A 39 LYS A 45 1 7 HELIX 3 AA3 GLU A 46 HIS A 56 1 11 HELIX 4 AA4 ASP A 73 ASN A 88 1 16 HELIX 5 AA5 THR A 101 ASN A 113 1 13 HELIX 6 AA6 SER A 146 HIS A 154 1 9 HELIX 7 AA7 ASP A 167 LYS A 172 1 6 HELIX 8 AA8 THR A 173 VAL A 179 1 7 HELIX 9 AA9 ASN A 182 ASN A 195 1 14 HELIX 10 AB1 ASN A 195 LYS A 205 1 11 HELIX 11 AB2 GLU A 214 ALA A 220 1 7 HELIX 12 AB3 THR A 227 PHE A 238 1 12 HELIX 13 AB4 HIS A 247 THR A 254 1 8 HELIX 14 AB5 GLY A 255 TYR A 270 1 16 HELIX 15 AB6 ASP A 274 LYS A 276 5 3 HELIX 16 AB7 ASP A 314 PHE A 337 1 24 HELIX 17 AB8 LYS A 353 GLY A 364 1 12 HELIX 18 AB9 THR B 14 GLN B 29 1 16 HELIX 19 AC1 THR B 39 LYS B 45 1 7 HELIX 20 AC2 GLU B 46 HIS B 56 1 11 HELIX 21 AC3 ASP B 73 ARG B 86 1 14 HELIX 22 AC4 THR B 101 ASN B 113 1 13 HELIX 23 AC5 SER B 146 ALA B 153 1 8 HELIX 24 AC6 ASP B 167 VAL B 179 1 13 HELIX 25 AC7 ASN B 182 ASN B 195 1 14 HELIX 26 AC8 ASN B 195 LYS B 205 1 11 HELIX 27 AC9 GLU B 214 ALA B 220 1 7 HELIX 28 AD1 THR B 227 PHE B 238 1 12 HELIX 29 AD2 GLU B 246 THR B 254 1 9 HELIX 30 AD3 GLY B 255 TYR B 270 1 16 HELIX 31 AD4 ASP B 314 PHE B 337 1 24 HELIX 32 AD5 LYS B 353 GLY B 364 1 12 SHEET 1 AA1 7 VAL A 62 HIS A 68 0 SHEET 2 AA1 7 MET A 32 SER A 38 1 N SER A 38 O ILE A 67 SHEET 3 AA1 7 THR A 4 LEU A 9 1 N ASN A 8 O VAL A 37 SHEET 4 AA1 7 ASN A 92 ASN A 96 1 O ILE A 94 N VAL A 7 SHEET 5 AA1 7 THR A 118 TYR A 122 1 O GLU A 119 N VAL A 95 SHEET 6 AA1 7 LEU A 129 TYR A 133 -1 O LEU A 132 N ILE A 120 SHEET 7 AA1 7 GLN A 137 TYR A 139 -1 O GLN A 137 N GLU A 131 SHEET 1 AA2 6 SER A 157 LYS A 159 0 SHEET 2 AA2 6 VAL A 278 LYS A 286 -1 O GLN A 285 N SER A 157 SHEET 3 AA2 6 ASP A 289 LEU A 298 -1 O ASN A 294 N ASN A 281 SHEET 4 AA2 6 LEU A 304 LYS A 310 -1 O HIS A 305 N TYR A 297 SHEET 5 AA2 6 VAL A 341 THR A 347 1 O HIS A 344 N VAL A 306 SHEET 6 AA2 6 ASP A 366 LYS A 368 1 O LYS A 368 N LEU A 345 SHEET 1 AA3 2 PHE A 207 LEU A 208 0 SHEET 2 AA3 2 ILE A 245 GLU A 246 -1 O ILE A 245 N LEU A 208 SHEET 1 AA4 7 VAL B 62 HIS B 68 0 SHEET 2 AA4 7 MET B 32 SER B 38 1 N LEU B 36 O GLU B 65 SHEET 3 AA4 7 THR B 4 LEU B 9 1 N LEU B 6 O LEU B 35 SHEET 4 AA4 7 ASN B 92 ASN B 96 1 O ILE B 94 N ILE B 5 SHEET 5 AA4 7 THR B 118 TYR B 122 1 O GLU B 119 N VAL B 95 SHEET 6 AA4 7 LEU B 129 TYR B 133 -1 O LEU B 132 N ILE B 120 SHEET 7 AA4 7 GLN B 137 TYR B 139 -1 O GLN B 137 N GLU B 131 SHEET 1 AA5 6 SER B 157 LYS B 159 0 SHEET 2 AA5 6 VAL B 273 LYS B 286 -1 O THR B 283 N LYS B 159 SHEET 3 AA5 6 ASP B 289 ASP B 299 -1 O ILE B 296 N ALA B 279 SHEET 4 AA5 6 LEU B 304 LYS B 310 -1 O HIS B 305 N TYR B 297 SHEET 5 AA5 6 VAL B 341 THR B 347 1 O HIS B 344 N VAL B 306 SHEET 6 AA5 6 ASP B 366 LYS B 368 1 O ASP B 366 N LEU B 345 LINK P A C 1 O3' A C 4 1555 1555 1.62 LINK OD1 ASP A 83 MN MN B 403 1555 3555 2.17 LINK OD2 ASP A 87 MN MN B 403 1555 3555 2.10 LINK OD1 ASP A 274 MN MN B 404 1555 6554 2.31 LINK OD1 ASN A 294 MN MN A 901 1555 1555 2.54 LINK OE1 GLU A 308 MN MN A 901 1555 1555 2.43 LINK O CYS A 309 MN MN A 901 1555 1555 2.55 LINK MN MN A 901 O HOH A1014 1555 1555 2.62 LINK MN MN A 901 O HOH A1215 1555 1555 2.27 LINK O HOH A1015 MN MN B 403 4454 1555 2.21 LINK OD1 ASN B 79 MN MN B 403 1555 1555 2.24 LINK OD2 ASP B 83 MN MN B 403 1555 1555 2.05 LINK NE2 HIS B 271 MN MN B 404 1555 1555 2.19 LINK OD1 ASN B 294 MN MN B 402 1555 1555 2.47 LINK OE2 GLU B 308 MN MN B 402 1555 1555 2.55 LINK O CYS B 309 MN MN B 402 1555 1555 2.25 LINK MN MN B 402 O HOH B 525 1555 1555 2.42 LINK MN MN B 402 O HOH B 547 1555 1555 2.37 LINK MN MN B 402 O HOH B 688 1555 1555 2.53 LINK MN MN B 403 O HOH B 571 1555 1555 2.27 LINK MN MN B 404 O HOH B 554 1555 1555 2.29 LINK MN MN B 404 O HOH B 717 1555 1555 2.13 LINK MN MN B 404 O HOH B 722 1555 1555 2.38 CISPEP 1 TYR A 133 PRO A 134 0 3.34 CISPEP 2 TYR B 133 PRO B 134 0 2.38 SITE 1 AC1 6 ASN A 294 GLU A 308 CYS A 309 LYS A 310 SITE 2 AC1 6 HOH A1014 HOH A1215 SITE 1 AC2 7 TYR B 270 HIS B 271 ASN B 272 LYS B 368 SITE 2 AC2 7 GLN B 372 HOH B 516 HOH B 555 SITE 1 AC3 6 ASN B 294 GLU B 308 CYS B 309 HOH B 525 SITE 2 AC3 6 HOH B 547 HOH B 688 SITE 1 AC4 6 ASP A 83 ASP A 87 HOH A1015 ASN B 79 SITE 2 AC4 6 ASP B 83 HOH B 571 SITE 1 AC5 5 ASP A 274 HIS B 271 HOH B 554 HOH B 717 SITE 2 AC5 5 HOH B 722 CRYST1 111.946 111.946 172.180 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005808 0.00000