HEADER TRANSFERASE/TRANSFERASE INHIBITOR 28-JUN-20 6XLO TITLE CRYSTAL STRUCTURE OF BRAF IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, INHIBITOR, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.YIN,C.EIGENBROT,W.WANG REVDAT 2 18-OCT-23 6XLO 1 REMARK REVDAT 1 26-MAY-21 6XLO 0 JRNL AUTH M.P.HUESTIS,D.DELA CRUZ,A.G.DIPASQUALE,M.R.DURK,C.EIGENBROT, JRNL AUTH 2 P.GIBBONS,A.GOBBI,T.L.HUNSAKER,H.LA,D.H.LEUNG,W.LIU,S.MALEK, JRNL AUTH 3 M.MERCHANT,J.G.MOFFAT,C.S.MULI,C.J.ORR,B.T.PARR,F.SHANAHAN, JRNL AUTH 4 C.J.SNEERINGER,W.WANG,I.YEN,J.YIN,M.SIU,J.RUDOLPH JRNL TITL TARGETING KRAS MUTANT CANCERS VIA COMBINATION TREATMENT: JRNL TITL 2 DISCOVERY OF A 5-FLUORO-4-(3 H )-QUINAZOLINONE ARYL UREA JRNL TITL 3 PAN-RAF KINASE INHIBITOR. JRNL REF J.MED.CHEM. V. 64 3940 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33780623 JRNL DOI 10.1021/ACS.JMEDCHEM.0C02085 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 (20-MAY-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 19069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.540 REMARK 3 FREE R VALUE TEST SET COUNT : 866 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 417 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.1880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.08 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 27 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61570 REMARK 3 B22 (A**2) : -1.26430 REMARK 3 B33 (A**2) : 0.64870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61710 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.420 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.730 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.306 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.316 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.861 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.823 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4236 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5703 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1517 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 701 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4236 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 532 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3295 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.86 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.64 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.96 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.0095 -20.1022 -17.0310 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.0196 REMARK 3 T33: 0.0491 T12: -0.0025 REMARK 3 T13: 0.0625 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 3.7291 L22: 2.9246 REMARK 3 L33: 1.9921 L12: -1.1411 REMARK 3 L13: 0.7261 L23: -0.7599 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: 0.1235 S13: 0.1373 REMARK 3 S21: -0.0419 S22: 0.0687 S23: -0.0511 REMARK 3 S31: -0.2156 S32: -0.0363 S33: 0.0243 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 2.4654 -52.5451 -17.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.0391 REMARK 3 T33: 0.0787 T12: -0.0380 REMARK 3 T13: -0.0301 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.7261 L22: 3.4627 REMARK 3 L33: 2.2432 L12: -1.5933 REMARK 3 L13: -0.6277 L23: 1.1974 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: 0.1476 S13: -0.2658 REMARK 3 S21: -0.0354 S22: 0.0731 S23: 0.1635 REMARK 3 S31: 0.2385 S32: -0.0389 S33: 0.0438 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { S|* } REMARK 3 ORIGIN FOR THE GROUP (A): -2.0401 -35.9635 -13.1044 REMARK 3 T TENSOR REMARK 3 T11: -0.1504 T22: 0.0044 REMARK 3 T33: -0.3014 T12: -0.0078 REMARK 3 T13: 0.0515 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 0.0156 L22: 1.3073 REMARK 3 L33: 0.5800 L12: -0.0808 REMARK 3 L13: 0.3817 L23: 0.0601 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.0808 S13: 0.2708 REMARK 3 S21: -0.0772 S22: 0.0541 S23: -0.1667 REMARK 3 S31: 0.1151 S32: -0.0487 S33: -0.1384 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 56.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3C4C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, AND 0.2M NA NITRATE, AND REMARK 280 0.1 M BIS-TRIS PROPANE PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.38950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 GLY A 442 REMARK 465 SER A 443 REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 ASP A 448 REMARK 465 ASN A 486 REMARK 465 VAL A 487 REMARK 465 THR A 488 REMARK 465 ALA A 489 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 MET A 627 REMARK 465 GLN A 628 REMARK 465 ASP A 629 REMARK 465 SER A 630 REMARK 465 ASN A 631 REMARK 465 LEU A 721 REMARK 465 SER A 722 REMARK 465 GLY A 723 REMARK 465 MET B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 465 HIS B 441 REMARK 465 GLY B 442 REMARK 465 SER B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 ASP B 448 REMARK 465 ASP B 449 REMARK 465 ASN B 486 REMARK 465 VAL B 487 REMARK 465 THR B 488 REMARK 465 ALA B 598 REMARK 465 THR B 599 REMARK 465 VAL B 600 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 SER B 614 REMARK 465 GLY B 615 REMARK 465 LEU B 721 REMARK 465 SER B 722 REMARK 465 GLY B 723 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 476 95.77 -173.90 REMARK 500 ARG A 575 -8.67 76.71 REMARK 500 ASP A 576 39.51 -147.86 REMARK 500 GLU A 586 17.39 56.81 REMARK 500 ASP A 587 17.50 59.24 REMARK 500 ASN A 588 -42.56 -133.60 REMARK 500 SER A 616 -12.60 -148.42 REMARK 500 TRP B 476 95.59 -173.25 REMARK 500 ARG B 575 -9.34 76.36 REMARK 500 ASP B 576 39.47 -146.61 REMARK 500 GLU B 586 16.65 56.83 REMARK 500 ASP B 587 17.73 58.79 REMARK 500 ASN B 588 -44.39 -134.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 943 DISTANCE = 6.18 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V5J A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V5J B 801 DBREF 6XLO A 436 723 PDB 6XLO 6XLO 436 723 DBREF 6XLO B 436 723 PDB 6XLO 6XLO 436 723 SEQRES 1 A 288 MET HIS HIS HIS HIS HIS GLY SER ARG ASP SER SER ASP SEQRES 2 A 288 ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY GLN SEQRES 3 A 288 ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS GLY SEQRES 4 A 288 LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN VAL SEQRES 5 A 288 THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS ASN SEQRES 6 A 288 GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN ILE SEQRES 7 A 288 LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU ALA SEQRES 8 A 288 ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR LYS SEQRES 9 A 288 HIS LEU HIS ALA SER GLU THR LYS PHE GLU MET LYS LYS SEQRES 10 A 288 LEU ILE ASP ILE ALA ARG GLN THR ALA ARG GLY MET ASP SEQRES 11 A 288 TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU LYS SEQRES 12 A 288 SER ASN ASN ILE PHE LEU HIS GLU ASP ASN THR VAL LYS SEQRES 13 A 288 ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG TRP SEQRES 14 A 288 SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER ILE SEQRES 15 A 288 LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SER SEQRES 16 A 288 ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE GLY SEQRES 17 A 288 ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO TYR SEQRES 18 A 288 SER ASN ILE ASN ASN ARG ASP GLN ILE ILE GLU MET VAL SEQRES 19 A 288 GLY ARG GLY SER LEU SER PRO ASP LEU SER LYS VAL ARG SEQRES 20 A 288 SER ASN CYS PRO LYS ARG MET LYS ARG LEU MET ALA GLU SEQRES 21 A 288 CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO SER PHE PRO SEQRES 22 A 288 ARG ILE LEU ALA GLU ILE GLU GLU LEU ALA ARG GLU LEU SEQRES 23 A 288 SER GLY SEQRES 1 B 288 MET HIS HIS HIS HIS HIS GLY SER ARG ASP SER SER ASP SEQRES 2 B 288 ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY GLN SEQRES 3 B 288 ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS GLY SEQRES 4 B 288 LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN VAL SEQRES 5 B 288 THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS ASN SEQRES 6 B 288 GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN ILE SEQRES 7 B 288 LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU ALA SEQRES 8 B 288 ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR LYS SEQRES 9 B 288 HIS LEU HIS ALA SER GLU THR LYS PHE GLU MET LYS LYS SEQRES 10 B 288 LEU ILE ASP ILE ALA ARG GLN THR ALA ARG GLY MET ASP SEQRES 11 B 288 TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU LYS SEQRES 12 B 288 SER ASN ASN ILE PHE LEU HIS GLU ASP ASN THR VAL LYS SEQRES 13 B 288 ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG TRP SEQRES 14 B 288 SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER ILE SEQRES 15 B 288 LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SER SEQRES 16 B 288 ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE GLY SEQRES 17 B 288 ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO TYR SEQRES 18 B 288 SER ASN ILE ASN ASN ARG ASP GLN ILE ILE GLU MET VAL SEQRES 19 B 288 GLY ARG GLY SER LEU SER PRO ASP LEU SER LYS VAL ARG SEQRES 20 B 288 SER ASN CYS PRO LYS ARG MET LYS ARG LEU MET ALA GLU SEQRES 21 B 288 CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO SER PHE PRO SEQRES 22 B 288 ARG ILE LEU ALA GLU ILE GLU GLU LEU ALA ARG GLU LEU SEQRES 23 B 288 SER GLY HET V5J A 801 34 HET IOD A 802 1 HET V5J B 801 34 HETNAM V5J 3-(2-CYANOPROPAN-2-YL)-N-[2-FLUORO-4-METHYL-5-(7- HETNAM 2 V5J METHYL-8-OXO-7,8-DIHYDROPYRIDO[2,3-D]PYRIDAZIN-3-YL) HETNAM 3 V5J PHENYL]BENZAMIDE HETNAM IOD IODIDE ION FORMUL 3 V5J 2(C26 H22 F N5 O2) FORMUL 4 IOD I 1- FORMUL 6 HOH *87(H2 O) HELIX 1 AA1 THR A 491 ARG A 506 1 16 HELIX 2 AA2 LEU A 537 ALA A 543 1 7 HELIX 3 AA3 GLU A 549 LYS A 570 1 22 HELIX 4 AA4 LYS A 578 ASN A 580 5 3 HELIX 5 AA5 SER A 616 MET A 620 5 5 HELIX 6 AA6 ALA A 621 ARG A 626 1 6 HELIX 7 AA7 SER A 634 GLY A 652 1 19 HELIX 8 AA8 ASN A 661 ARG A 671 1 11 HELIX 9 AA9 ASP A 677 VAL A 681 5 5 HELIX 10 AB1 PRO A 686 LEU A 697 1 12 HELIX 11 AB2 LYS A 700 ARG A 704 5 5 HELIX 12 AB3 SER A 706 GLU A 720 1 15 HELIX 13 AB4 THR B 491 ARG B 506 1 16 HELIX 14 AB5 LEU B 537 HIS B 542 1 6 HELIX 15 AB6 GLU B 549 LYS B 570 1 22 HELIX 16 AB7 LYS B 578 ASN B 580 5 3 HELIX 17 AB8 SER B 616 MET B 620 5 5 HELIX 18 AB9 ALA B 621 ARG B 626 1 6 HELIX 19 AC1 SER B 634 GLY B 652 1 19 HELIX 20 AC2 ASN B 661 ARG B 671 1 11 HELIX 21 AC3 ASP B 677 VAL B 681 5 5 HELIX 22 AC4 PRO B 686 LEU B 697 1 12 HELIX 23 AC5 LYS B 700 ARG B 704 5 5 HELIX 24 AC6 SER B 706 GLU B 720 1 15 SHEET 1 AA1 5 THR A 458 GLY A 466 0 SHEET 2 AA1 5 GLY A 469 LYS A 475 -1 O LYS A 473 N GLN A 461 SHEET 3 AA1 5 ASP A 479 MET A 484 -1 O VAL A 482 N TYR A 472 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O THR A 529 N ALA A 481 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528 SHEET 1 AA2 3 GLY A 534 SER A 536 0 SHEET 2 AA2 3 ILE A 582 HIS A 585 -1 O LEU A 584 N SER A 535 SHEET 3 AA2 3 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 5 THR B 458 GLY B 466 0 SHEET 2 AA3 5 GLY B 469 LYS B 475 -1 O LYS B 473 N GLN B 461 SHEET 3 AA3 5 ASP B 479 MET B 484 -1 O VAL B 482 N TYR B 472 SHEET 4 AA3 5 ALA B 526 GLN B 530 -1 O THR B 529 N ALA B 481 SHEET 5 AA3 5 PHE B 516 SER B 520 -1 N MET B 517 O VAL B 528 SHEET 1 AA4 3 GLY B 534 SER B 536 0 SHEET 2 AA4 3 ILE B 582 HIS B 585 -1 O LEU B 584 N SER B 535 SHEET 3 AA4 3 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583 CISPEP 1 LYS A 522 PRO A 523 0 -3.73 CISPEP 2 LYS B 522 PRO B 523 0 -3.95 SITE 1 AC1 14 VAL A 471 ALA A 481 LYS A 483 GLU A 501 SITE 2 AC1 14 LEU A 505 LEU A 514 ILE A 527 THR A 529 SITE 3 AC1 14 GLN A 530 CYS A 532 HIS A 574 ILE A 592 SITE 4 AC1 14 GLY A 593 ASP A 594 SITE 1 AC2 3 GLN A 496 SER A 602 ARG A 603 SITE 1 AC3 17 VAL B 471 ALA B 481 LYS B 483 GLU B 501 SITE 2 AC3 17 LEU B 505 LEU B 514 ILE B 527 THR B 529 SITE 3 AC3 17 GLN B 530 TRP B 531 CYS B 532 HIS B 574 SITE 4 AC3 17 ILE B 592 GLY B 593 ASP B 594 HOH B 910 SITE 5 AC3 17 HOH B 924 CRYST1 48.059 104.779 60.258 90.00 109.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020808 0.000000 0.007446 0.00000 SCALE2 0.000000 0.009544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017626 0.00000