HEADER LYASE 30-JUN-20 6XML TITLE HUMAN ALDOLASE A I98C COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LUNG CANCER ANTIGEN NY-LU-1,MUSCLE-TYPE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDOA, ALDA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS RHEOSTAT, ALLOSTERISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.MENEELY,K.BREWER,A.L.LAMB REVDAT 4 18-OCT-23 6XML 1 REMARK REVDAT 3 16-FEB-22 6XML 1 JRNL REVDAT 2 19-JAN-22 6XML 1 JRNL REVDAT 1 07-JUL-21 6XML 0 JRNL AUTH K.D.FENTON,K.M.MENEELY,T.WU,T.A.MARTIN,L.SWINT-KRUSE, JRNL AUTH 2 A.W.FENTON,A.L.LAMB JRNL TITL SUBSTITUTIONS AT A RHEOSTAT POSITION IN HUMAN ALDOLASE A JRNL TITL 2 CAUSE A SHIFT IN THE CONFORMATIONAL POPULATION. JRNL REF PROTEIN SCI. V. 31 357 2022 JRNL REFN ESSN 1469-896X JRNL PMID 34734672 JRNL DOI 10.1002/PRO.4222 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.7 REMARK 3 NUMBER OF REFLECTIONS : 65253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 3139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2000 - 5.2700 0.99 4918 270 0.1973 0.2262 REMARK 3 2 5.2700 - 4.1800 1.00 4695 247 0.1684 0.2231 REMARK 3 3 4.1800 - 3.6500 1.00 4644 231 0.1872 0.2299 REMARK 3 4 3.6500 - 3.3200 1.00 4651 212 0.2312 0.3050 REMARK 3 5 3.3200 - 3.0800 1.00 4595 246 0.2655 0.3008 REMARK 3 6 3.0800 - 2.9000 1.00 4577 235 0.2903 0.3523 REMARK 3 7 2.9000 - 2.7500 1.00 4559 237 0.3161 0.3530 REMARK 3 8 2.7500 - 2.6300 0.92 4198 212 0.3237 0.3326 REMARK 3 9 2.6300 - 2.5300 1.00 4536 236 0.3316 0.3290 REMARK 3 10 2.5300 - 2.4500 0.99 4522 228 0.3503 0.3763 REMARK 3 11 2.4500 - 2.3700 0.87 3987 193 0.3488 0.3716 REMARK 3 12 2.3700 - 2.3000 0.64 2907 144 0.3550 0.4204 REMARK 3 13 2.3000 - 2.2400 0.42 1888 99 0.3420 0.3919 REMARK 3 14 2.2400 - 2.1900 0.36 1639 79 0.3308 0.3820 REMARK 3 15 2.1900 - 2.1400 0.29 1348 53 0.3351 0.3142 REMARK 3 16 2.1400 - 2.0900 0.26 1151 57 0.3384 0.3938 REMARK 3 17 2.0900 - 2.0500 0.16 725 38 0.3655 0.4639 REMARK 3 18 2.0500 - 2.0100 0.18 822 31 0.3893 0.3297 REMARK 3 19 2.0100 - 1.9700 0.15 664 40 0.3566 0.3966 REMARK 3 20 1.9700 - 1.9400 0.12 519 26 0.3482 0.3968 REMARK 3 21 1.9400 - 1.9100 0.08 365 17 0.3802 0.5034 REMARK 3 22 1.9100 - 1.8800 0.04 204 8 0.3658 0.4580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 44.447 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 5530 REMARK 3 ANGLE : 1.862 7482 REMARK 3 CHIRALITY : 0.075 846 REMARK 3 PLANARITY : 0.011 967 REMARK 3 DIHEDRAL : 24.695 2049 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65292 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 107.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1ALD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 8000, 21% (V/V) GLYCEROL REMARK 280 IN 0.04 M POTASSIUM PHOSPHATE, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.93233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.86467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.93233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.86467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.93233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 111.86467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 55.93233 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 111.86467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.28550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 140.79062 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 TYR A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 SER A 346 REMARK 465 GLY A 347 REMARK 465 GLN A 348 REMARK 465 HIS A 362 REMARK 465 ALA A 363 REMARK 465 TYR A 364 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 TYR B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 363 REMARK 465 TYR B 364 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 362 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG22 THR A 124 H THR A 125 1.05 REMARK 500 O CYS B 290 HZ1 LYS B 294 1.42 REMARK 500 HH11 ARG A 149 OE2 GLU A 190 1.58 REMARK 500 HZ3 LYS A 230 OG SER A 301 1.60 REMARK 500 O CYS B 290 NZ LYS B 294 1.86 REMARK 500 O HOH B 583 O HOH B 606 1.89 REMARK 500 OE1 GLU B 319 O HOH B 501 2.01 REMARK 500 O HOH B 587 O HOH B 602 2.07 REMARK 500 O HOH A 588 O HOH A 595 2.11 REMARK 500 OD1 ASP B 68 O HOH B 502 2.14 REMARK 500 O HOH A 546 O HOH A 616 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 11 CB GLU A 11 CG 0.116 REMARK 500 TYR A 214 CZ TYR A 214 CE2 0.079 REMARK 500 GLU A 225 CG GLU A 225 CD 0.096 REMARK 500 PRO A 231 CD PRO A 231 N -0.087 REMARK 500 THR B 9 C THR B 9 O -0.131 REMARK 500 PRO B 10 C PRO B 10 O -0.122 REMARK 500 GLU B 35 CG GLU B 35 CD 0.099 REMARK 500 VAL B 187 C VAL B 187 O -0.123 REMARK 500 GLU B 188 CD GLU B 188 OE1 -0.138 REMARK 500 GLU B 188 CD GLU B 188 OE2 -0.095 REMARK 500 GLU B 190 CD GLU B 190 OE1 -0.090 REMARK 500 GLU B 190 CD GLU B 190 OE2 -0.068 REMARK 500 GLU B 207 CG GLU B 207 CD 0.091 REMARK 500 GLU B 279 CG GLU B 279 CD 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 LEU A 116 CB - CG - CD2 ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU A 271 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 134 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU B 224 CB - CG - CD1 ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 -9.00 -58.89 REMARK 500 HIS A 221 41.13 72.46 REMARK 500 SER A 276 151.88 -49.18 REMARK 500 THR B 260 -24.69 -143.84 REMARK 500 THR B 299 -155.26 -129.35 REMARK 500 CYS B 339 2.81 -66.24 REMARK 500 SER B 360 124.79 -35.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 123 THR A 124 147.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 DBREF 6XML A 1 364 UNP P04075 ALDOA_HUMAN 1 364 DBREF 6XML B 1 364 UNP P04075 ALDOA_HUMAN 1 364 SEQADV 6XML CYS A 98 UNP P04075 ILE 98 ENGINEERED MUTATION SEQADV 6XML CYS B 98 UNP P04075 ILE 98 ENGINEERED MUTATION SEQRES 1 A 364 MET PRO TYR GLN TYR PRO ALA LEU THR PRO GLU GLN LYS SEQRES 2 A 364 LYS GLU LEU SER ASP ILE ALA HIS ARG ILE VAL ALA PRO SEQRES 3 A 364 GLY LYS GLY ILE LEU ALA ALA ASP GLU SER THR GLY SER SEQRES 4 A 364 ILE ALA LYS ARG LEU GLN SER ILE GLY THR GLU ASN THR SEQRES 5 A 364 GLU GLU ASN ARG ARG PHE TYR ARG GLN LEU LEU LEU THR SEQRES 6 A 364 ALA ASP ASP ARG VAL ASN PRO CYS ILE GLY GLY VAL ILE SEQRES 7 A 364 LEU PHE HIS GLU THR LEU TYR GLN LYS ALA ASP ASP GLY SEQRES 8 A 364 ARG PRO PHE PRO GLN VAL CYS LYS SER LYS GLY GLY VAL SEQRES 9 A 364 VAL GLY ILE LYS VAL ASP LYS GLY VAL VAL PRO LEU ALA SEQRES 10 A 364 GLY THR ASN GLY GLU THR THR THR GLN GLY LEU ASP GLY SEQRES 11 A 364 LEU SER GLU ARG CYS ALA GLN TYR LYS LYS ASP GLY ALA SEQRES 12 A 364 ASP PHE ALA LYS TRP ARG CYS VAL LEU LYS ILE GLY GLU SEQRES 13 A 364 HIS THR PRO SER ALA LEU ALA ILE MET GLU ASN ALA ASN SEQRES 14 A 364 VAL LEU ALA ARG TYR ALA SER ILE CYS GLN GLN ASN GLY SEQRES 15 A 364 ILE VAL PRO ILE VAL GLU PRO GLU ILE LEU PRO ASP GLY SEQRES 16 A 364 ASP HIS ASP LEU LYS ARG CYS GLN TYR VAL THR GLU LYS SEQRES 17 A 364 VAL LEU ALA ALA VAL TYR LYS ALA LEU SER ASP HIS HIS SEQRES 18 A 364 ILE TYR LEU GLU GLY THR LEU LEU LYS PRO ASN MET VAL SEQRES 19 A 364 THR PRO GLY HIS ALA CYS THR GLN LYS PHE SER HIS GLU SEQRES 20 A 364 GLU ILE ALA MET ALA THR VAL THR ALA LEU ARG ARG THR SEQRES 21 A 364 VAL PRO PRO ALA VAL THR GLY ILE THR PHE LEU SER GLY SEQRES 22 A 364 GLY GLN SER GLU GLU GLU ALA SER ILE ASN LEU ASN ALA SEQRES 23 A 364 ILE ASN LYS CYS PRO LEU LEU LYS PRO TRP ALA LEU THR SEQRES 24 A 364 PHE SER TYR GLY ARG ALA LEU GLN ALA SER ALA LEU LYS SEQRES 25 A 364 ALA TRP GLY GLY LYS LYS GLU ASN LEU LYS ALA ALA GLN SEQRES 26 A 364 GLU GLU TYR VAL LYS ARG ALA LEU ALA ASN SER LEU ALA SEQRES 27 A 364 CYS GLN GLY LYS TYR THR PRO SER GLY GLN ALA GLY ALA SEQRES 28 A 364 ALA ALA SER GLU SER LEU PHE VAL SER ASN HIS ALA TYR SEQRES 1 B 364 MET PRO TYR GLN TYR PRO ALA LEU THR PRO GLU GLN LYS SEQRES 2 B 364 LYS GLU LEU SER ASP ILE ALA HIS ARG ILE VAL ALA PRO SEQRES 3 B 364 GLY LYS GLY ILE LEU ALA ALA ASP GLU SER THR GLY SER SEQRES 4 B 364 ILE ALA LYS ARG LEU GLN SER ILE GLY THR GLU ASN THR SEQRES 5 B 364 GLU GLU ASN ARG ARG PHE TYR ARG GLN LEU LEU LEU THR SEQRES 6 B 364 ALA ASP ASP ARG VAL ASN PRO CYS ILE GLY GLY VAL ILE SEQRES 7 B 364 LEU PHE HIS GLU THR LEU TYR GLN LYS ALA ASP ASP GLY SEQRES 8 B 364 ARG PRO PHE PRO GLN VAL CYS LYS SER LYS GLY GLY VAL SEQRES 9 B 364 VAL GLY ILE LYS VAL ASP LYS GLY VAL VAL PRO LEU ALA SEQRES 10 B 364 GLY THR ASN GLY GLU THR THR THR GLN GLY LEU ASP GLY SEQRES 11 B 364 LEU SER GLU ARG CYS ALA GLN TYR LYS LYS ASP GLY ALA SEQRES 12 B 364 ASP PHE ALA LYS TRP ARG CYS VAL LEU LYS ILE GLY GLU SEQRES 13 B 364 HIS THR PRO SER ALA LEU ALA ILE MET GLU ASN ALA ASN SEQRES 14 B 364 VAL LEU ALA ARG TYR ALA SER ILE CYS GLN GLN ASN GLY SEQRES 15 B 364 ILE VAL PRO ILE VAL GLU PRO GLU ILE LEU PRO ASP GLY SEQRES 16 B 364 ASP HIS ASP LEU LYS ARG CYS GLN TYR VAL THR GLU LYS SEQRES 17 B 364 VAL LEU ALA ALA VAL TYR LYS ALA LEU SER ASP HIS HIS SEQRES 18 B 364 ILE TYR LEU GLU GLY THR LEU LEU LYS PRO ASN MET VAL SEQRES 19 B 364 THR PRO GLY HIS ALA CYS THR GLN LYS PHE SER HIS GLU SEQRES 20 B 364 GLU ILE ALA MET ALA THR VAL THR ALA LEU ARG ARG THR SEQRES 21 B 364 VAL PRO PRO ALA VAL THR GLY ILE THR PHE LEU SER GLY SEQRES 22 B 364 GLY GLN SER GLU GLU GLU ALA SER ILE ASN LEU ASN ALA SEQRES 23 B 364 ILE ASN LYS CYS PRO LEU LEU LYS PRO TRP ALA LEU THR SEQRES 24 B 364 PHE SER TYR GLY ARG ALA LEU GLN ALA SER ALA LEU LYS SEQRES 25 B 364 ALA TRP GLY GLY LYS LYS GLU ASN LEU LYS ALA ALA GLN SEQRES 26 B 364 GLU GLU TYR VAL LYS ARG ALA LEU ALA ASN SER LEU ALA SEQRES 27 B 364 CYS GLN GLY LYS TYR THR PRO SER GLY GLN ALA GLY ALA SEQRES 28 B 364 ALA ALA SER GLU SER LEU PHE VAL SER ASN HIS ALA TYR HET PO4 A 401 5 HET PO4 A 402 5 HET GOL A 403 14 HET GOL A 404 14 HET GOL A 405 14 HET PO4 B 401 5 HET PO4 B 402 5 HET GOL B 403 14 HET GOL B 404 14 HET GOL B 405 14 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 13 HOH *251(H2 O) HELIX 1 AA1 THR A 9 VAL A 24 1 16 HELIX 2 AA2 SER A 39 SER A 46 1 8 HELIX 3 AA3 THR A 52 THR A 65 1 14 HELIX 4 AA4 ASP A 67 PRO A 72 5 6 HELIX 5 AA5 PHE A 80 TYR A 85 1 6 HELIX 6 AA6 PRO A 93 LYS A 101 1 9 HELIX 7 AA7 GLY A 130 ASP A 141 1 12 HELIX 8 AA8 SER A 160 ASN A 181 1 22 HELIX 9 AA9 ASP A 198 HIS A 220 1 23 HELIX 10 AB1 TYR A 223 GLY A 226 5 4 HELIX 11 AB2 SER A 245 ARG A 259 1 15 HELIX 12 AB3 SER A 276 CYS A 290 1 15 HELIX 13 AB4 GLY A 303 GLY A 315 1 13 HELIX 14 AB5 LYS A 317 GLU A 319 5 3 HELIX 15 AB6 ASN A 320 CYS A 339 1 20 HELIX 16 AB7 THR B 9 VAL B 24 1 16 HELIX 17 AB8 SER B 36 SER B 46 1 11 HELIX 18 AB9 THR B 52 THR B 65 1 14 HELIX 19 AC1 PHE B 80 TYR B 85 1 6 HELIX 20 AC2 PRO B 93 LYS B 101 1 9 HELIX 21 AC3 GLY B 130 ASP B 141 1 12 HELIX 22 AC4 SER B 160 ASN B 181 1 22 HELIX 23 AC5 ASP B 198 HIS B 220 1 23 HELIX 24 AC6 TYR B 223 GLY B 226 5 4 HELIX 25 AC7 SER B 245 ARG B 259 1 15 HELIX 26 AC8 SER B 276 CYS B 290 1 15 HELIX 27 AC9 GLY B 303 GLY B 315 1 13 HELIX 28 AD1 LYS B 317 GLU B 319 5 3 HELIX 29 AD2 ASN B 320 CYS B 339 1 20 HELIX 30 AD3 GLY B 350 GLU B 355 1 6 SHEET 1 AA1 9 GLY A 29 ALA A 33 0 SHEET 2 AA1 9 ILE A 74 LEU A 79 1 O ILE A 78 N LEU A 31 SHEET 3 AA1 9 VAL A 104 LYS A 108 1 O GLY A 106 N VAL A 77 SHEET 4 AA1 9 PHE A 145 LEU A 152 1 O PHE A 145 N ILE A 107 SHEET 5 AA1 9 VAL A 184 ILE A 191 1 O GLU A 190 N LEU A 152 SHEET 6 AA1 9 LEU A 228 LEU A 229 1 O LEU A 228 N VAL A 187 SHEET 7 AA1 9 GLY A 267 PHE A 270 1 O THR A 269 N LEU A 229 SHEET 8 AA1 9 ALA A 297 TYR A 302 1 O THR A 299 N ILE A 268 SHEET 9 AA1 9 GLY A 29 ALA A 33 1 N ALA A 32 O TYR A 302 SHEET 1 AA2 2 VAL A 113 PRO A 115 0 SHEET 2 AA2 2 THR A 123 THR A 125 -1 O THR A 124 N VAL A 114 SHEET 1 AA3 9 GLY B 29 ALA B 33 0 SHEET 2 AA3 9 ILE B 74 LEU B 79 1 O GLY B 75 N GLY B 29 SHEET 3 AA3 9 VAL B 104 LYS B 108 1 O VAL B 104 N GLY B 75 SHEET 4 AA3 9 ALA B 143 LEU B 152 1 O ASP B 144 N VAL B 105 SHEET 5 AA3 9 VAL B 184 ILE B 191 1 O GLU B 188 N CYS B 150 SHEET 6 AA3 9 LEU B 228 LEU B 229 1 O LEU B 228 N VAL B 187 SHEET 7 AA3 9 GLY B 267 PHE B 270 1 O THR B 269 N LEU B 229 SHEET 8 AA3 9 ALA B 297 TYR B 302 1 O SER B 301 N PHE B 270 SHEET 9 AA3 9 GLY B 29 ALA B 33 1 N ILE B 30 O PHE B 300 SHEET 1 AA4 2 VAL B 113 PRO B 115 0 SHEET 2 AA4 2 THR B 123 THR B 125 -1 O THR B 124 N VAL B 114 CISPEP 1 THR A 158 PRO A 159 0 0.80 CISPEP 2 THR B 158 PRO B 159 0 -7.42 SITE 1 AC1 5 SER A 272 GLY A 273 GLY A 303 ARG A 304 SITE 2 AC1 5 HOH A 576 SITE 1 AC2 5 GLN A 203 ARG A 259 GOL A 403 HOH A 573 SITE 2 AC2 5 LYS B 13 SITE 1 AC3 5 LYS A 200 GLN A 203 TYR A 204 GLU A 207 SITE 2 AC3 5 PO4 A 402 SITE 1 AC4 2 GLU A 156 HIS A 157 SITE 1 AC5 4 SER A 218 HIS A 221 TYR B 204 GLU B 207 SITE 1 AC6 4 SER B 272 GLY B 273 GLY B 303 ARG B 304 SITE 1 AC7 4 LYS A 13 LYS B 200 GLN B 203 ARG B 259 SITE 1 AC8 1 LYS B 108 SITE 1 AC9 8 LEU A 128 GLU A 166 ASN A 169 HOH A 582 SITE 2 AC9 8 GLU B 166 ASN B 169 VAL B 170 HOH B 533 SITE 1 AD1 1 HIS B 81 CRYST1 162.571 162.571 167.797 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006151 0.003551 0.000000 0.00000 SCALE2 0.000000 0.007103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005960 0.00000