HEADER IMMUNE SYSTEM 06-JUL-20 6XOC TITLE CRYSTAL STRUCTURE OF GLVRC01 FAB IN COMPLEX WITH ANTI-IDIOTYPIC IV4 TITLE 2 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: IV4 FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IV4 FAB LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: IGL-VRC01 FAB HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: IGL-VRC01 FAB LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB, COMPLEX, IMMUNE SYSTEM, HIV, CD4-BINDING SITE EXPDTA X-RAY DIFFRACTION AUTHOR S.S.ALJEDANI,C.WEIDLE,M.PANCERA REVDAT 3 18-OCT-23 6XOC 1 REMARK REVDAT 2 19-MAY-21 6XOC 1 JRNL REVDAT 1 31-MAR-21 6XOC 0 JRNL AUTH E.SEYDOUX,Y.H.WAN,J.FENG,A.WALL,S.ALJEDANI,L.J.HOMAD, JRNL AUTH 2 A.J.MACCAMY,C.WEIDLE,M.D.GRAY,L.BRUMAGE,J.J.TAYLOR, JRNL AUTH 3 M.PANCERA,L.STAMATATOS,A.T.MCGUIRE JRNL TITL DEVELOPMENT OF A VRC01-CLASS GERMLINE TARGETING IMMUNOGEN JRNL TITL 2 DERIVED FROM ANTI-IDIOTYPIC ANTIBODIES. JRNL REF CELL REP V. 35 09084 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 33951425 JRNL DOI 10.1016/J.CELREP.2021.109084 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 41591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 2188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0100 - 6.1800 1.00 2952 159 0.1894 0.2142 REMARK 3 2 6.1800 - 4.9000 1.00 2815 167 0.1805 0.1909 REMARK 3 3 4.9000 - 4.2800 1.00 2798 156 0.1473 0.2078 REMARK 3 4 4.2800 - 3.8900 1.00 2771 159 0.1676 0.1926 REMARK 3 5 3.8900 - 3.6100 1.00 2760 160 0.1848 0.2263 REMARK 3 6 3.6100 - 3.4000 1.00 2778 169 0.1972 0.2751 REMARK 3 7 3.4000 - 3.2300 1.00 2750 148 0.2203 0.2263 REMARK 3 8 3.2300 - 3.0900 1.00 2754 144 0.2266 0.2713 REMARK 3 9 3.0900 - 2.9700 1.00 2743 159 0.2365 0.2886 REMARK 3 10 2.9700 - 2.8700 0.98 2701 131 0.2335 0.2926 REMARK 3 11 2.8700 - 2.7800 0.92 2507 155 0.2470 0.3053 REMARK 3 12 2.7800 - 2.7000 0.84 2330 111 0.2446 0.3059 REMARK 3 13 2.7000 - 2.6300 0.78 2103 116 0.2409 0.2689 REMARK 3 14 2.6300 - 2.5600 0.67 1847 103 0.2385 0.2918 REMARK 3 15 2.5600 - 2.5100 0.57 1566 78 0.2665 0.4066 REMARK 3 16 2.5100 - 2.4500 0.45 1228 73 0.2626 0.3159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.274 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.867 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6732 REMARK 3 ANGLE : 0.992 9150 REMARK 3 CHIRALITY : 0.060 1018 REMARK 3 PLANARITY : 0.006 1174 REMARK 3 DIHEDRAL : 20.253 2368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000249988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 110.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.5, 8%W/V PEG 20K, REMARK 280 8%W/V PEG MME 550 AND 0.2 M KSCN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.00800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.20850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 110.48450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.00800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.20850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 110.48450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.00800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.20850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 110.48450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.00800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.20850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 110.48450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H1226 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 SER A 127 OG REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 ASN A 198 CG OD1 ND2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 SER B 121 OG REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 LEU H 138 CG CD1 CD2 REMARK 470 SER H 153 OG REMARK 470 ILE H 195 CG1 CG2 CD1 REMARK 470 ASN H 197 CG OD1 ND2 REMARK 470 LYS H 201 CG CD CE NZ REMARK 470 THR H 205 OG1 CG2 REMARK 470 LYS H 206 CG CD CE NZ REMARK 470 LYS H 209 CG CD CE NZ REMARK 470 VAL L 128 CG1 CG2 REMARK 470 LYS L 141 CG CD CE NZ REMARK 470 VAL L 146 CG1 CG2 REMARK 470 LEU L 150 CG CD1 CD2 REMARK 470 LYS L 165 CG CD CE NZ REMARK 470 LEU L 177 CG CD1 CD2 REMARK 470 SER L 178 OG REMARK 470 LYS L 179 CG CD CE NZ REMARK 470 LYS L 186 CG CD CE NZ REMARK 470 TYR L 188 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG L 207 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS L 88 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 55 18.72 59.75 REMARK 500 SER A 82B 61.84 38.11 REMARK 500 TRP A 100 168.75 72.42 REMARK 500 TYR A 100B -44.20 -133.09 REMARK 500 TYR A 100C -75.57 -95.43 REMARK 500 LYS A 128 74.32 -100.62 REMARK 500 LEU B 47 -60.28 -100.75 REMARK 500 VAL B 51 -59.15 71.69 REMARK 500 ASN B 152 -0.28 70.05 REMARK 500 ASP H 99 -124.34 58.70 REMARK 500 ASN H 204 47.33 39.79 REMARK 500 ALA L 51 -52.76 72.06 REMARK 500 TYR L 91 -121.83 57.52 REMARK 500 LYS L 184 41.37 -81.59 REMARK 500 LYS L 186 -71.51 -102.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 75 OG REMARK 620 2 TYR A 79 OH 88.5 REMARK 620 N 1 DBREF 6XOC A 1 212 PDB 6XOC 6XOC 1 212 DBREF 6XOC B 1 212 PDB 6XOC 6XOC 1 212 DBREF 6XOC H 1 213 PDB 6XOC 6XOC 1 213 DBREF 6XOC L 1 207 PDB 6XOC 6XOC 1 207 SEQRES 1 A 221 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 A 221 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER ALA SEQRES 3 A 221 TYR THR PHE THR SER TYR TRP ILE ASN TRP VAL LYS GLN SEQRES 4 A 221 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ASN ILE TYR SEQRES 5 A 221 PRO GLY SER SER SER THR ASN TYR ASN GLU LYS PHE LYS SEQRES 6 A 221 THR LYS ALA THR LEU THR VAL ASP ARG SER SER ARG THR SEQRES 7 A 221 ALA TYR MET GLN LEU SER SER LEU THR SER ASP ASP SER SEQRES 8 A 221 ALA VAL TYR TYR CYS ALA ARG LEU ASP SER GLY ASP TRP SEQRES 9 A 221 TYR TYR TYR GLY LEU ASP TYR TRP GLY GLN GLY THR SER SEQRES 10 A 221 VAL THR VAL PHE ASN GLN ILE LYS GLY PRO SER VAL PHE SEQRES 11 A 221 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 A 221 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 A 221 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 A 221 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 A 221 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 A 221 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 A 221 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 1 B 217 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 B 217 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 B 217 GLN ASN ILE VAL HIS TYR ASN GLY ASN THR TYR LEU GLU SEQRES 4 B 217 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 B 217 ILE TYR GLN VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 B 217 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 B 217 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 B 217 TYR CYS PHE GLN GLY SER HIS VAL PRO PHE THR PHE GLY SEQRES 9 B 217 SER GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 B 217 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 B 217 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 B 217 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 B 217 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 B 217 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 B 217 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 B 217 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 B 217 PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 1 H 221 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 221 PRO ASN SER GLY GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 221 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 221 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG GLY LYS ASN CYS ASP TYR SEQRES 9 H 221 ASN TRP ASP PHE GLN HIS TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 221 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 221 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 221 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 221 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 221 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 221 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 221 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 221 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 1 L 207 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 L 207 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 207 GLN SER VAL SER SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 207 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 207 ASN ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 207 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 207 GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 L 207 GLU PHE PHE GLY GLN GLY THR LYS LEU GLU ILE LYS ARG SEQRES 9 L 207 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 10 L 207 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 11 L 207 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 12 L 207 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 13 L 207 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 14 L 207 SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 15 L 207 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 16 L 207 GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG HET K A 301 1 HET K A 302 1 HET K A 303 1 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET PEG A 309 7 HET SCN A 310 3 HET TRS A 311 8 HET EDO B 301 4 HET PEG B 302 7 HET EDO H1101 4 HET EDO L 301 4 HET EDO L 302 4 HET PEG L 303 7 HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SCN THIOCYANATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 5 K 3(K 1+) FORMUL 8 EDO 9(C2 H6 O2) FORMUL 13 PEG 3(C4 H10 O3) FORMUL 14 SCN C N S 1- FORMUL 15 TRS C4 H12 N O3 1+ FORMUL 22 HOH *230(H2 O) HELIX 1 AA1 SER A 25 SER A 31 1 7 HELIX 2 AA2 GLU A 61 LYS A 64 5 4 HELIX 3 AA3 THR A 83 SER A 87 5 5 HELIX 4 AA4 SER A 155 ALA A 157 5 3 HELIX 5 AA5 SER A 186 LEU A 188 5 3 HELIX 6 AA6 LYS A 200 ASN A 203 5 4 HELIX 7 AA7 GLU B 79 LEU B 83 5 5 HELIX 8 AA8 SER B 121 GLY B 128 1 8 HELIX 9 AA9 LYS B 183 HIS B 189 1 7 HELIX 10 AB1 THR H 28 TYR H 32 5 5 HELIX 11 AB2 GLN H 61 GLN H 64 5 4 HELIX 12 AB3 THR H 73 ILE H 75 5 3 HELIX 13 AB4 ARG H 83 THR H 87 5 5 HELIX 14 AB5 TRP H 154 ALA H 158 5 5 HELIX 15 AB6 PRO H 185 GLY H 190 5 6 HELIX 16 AB7 LYS H 201 ASN H 204 5 4 HELIX 17 AB8 GLU L 79 PHE L 83 5 5 HELIX 18 AB9 ASP L 118 GLY L 124 1 7 HELIX 19 AC1 LYS L 179 LYS L 184 1 6 SHEET 1 AA1 4 LEU A 4 GLN A 5 0 SHEET 2 AA1 4 VAL A 18 ALA A 24 -1 O LYS A 23 N GLN A 5 SHEET 3 AA1 4 THR A 77 LEU A 82 -1 O ALA A 78 N CYS A 22 SHEET 4 AA1 4 ALA A 67 ASP A 72 -1 N THR A 68 O GLN A 81 SHEET 1 AA2 6 ALA A 9 VAL A 12 0 SHEET 2 AA2 6 THR A 107 VAL A 111 1 O SER A 108 N GLU A 10 SHEET 3 AA2 6 ALA A 88 ASP A 96 -1 N ALA A 88 O VAL A 109 SHEET 4 AA2 6 TYR A 32 GLN A 39 -1 N ASN A 35 O ALA A 93 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N LYS A 38 SHEET 6 AA2 6 THR A 57 TYR A 59 -1 O ASN A 58 N ASN A 50 SHEET 1 AA3 4 ALA A 9 VAL A 12 0 SHEET 2 AA3 4 THR A 107 VAL A 111 1 O SER A 108 N GLU A 10 SHEET 3 AA3 4 ALA A 88 ASP A 96 -1 N ALA A 88 O VAL A 109 SHEET 4 AA3 4 LEU A 100E TRP A 103 -1 O TYR A 102 N ARG A 94 SHEET 1 AA4 4 SER A 119 LEU A 123 0 SHEET 2 AA4 4 THR A 134 TYR A 144 -1 O LEU A 140 N PHE A 121 SHEET 3 AA4 4 TYR A 175 PRO A 184 -1 O TYR A 175 N TYR A 144 SHEET 4 AA4 4 HIS A 163 THR A 164 -1 N HIS A 163 O VAL A 180 SHEET 1 AA5 4 SER A 119 LEU A 123 0 SHEET 2 AA5 4 THR A 134 TYR A 144 -1 O LEU A 140 N PHE A 121 SHEET 3 AA5 4 TYR A 175 PRO A 184 -1 O TYR A 175 N TYR A 144 SHEET 4 AA5 4 VAL A 168 LEU A 169 -1 N VAL A 168 O SER A 176 SHEET 1 AA6 3 THR A 150 TRP A 153 0 SHEET 2 AA6 3 ILE A 194 HIS A 199 -1 O ASN A 196 N SER A 152 SHEET 3 AA6 3 THR A 204 ARG A 209 -1 O VAL A 206 N VAL A 197 SHEET 1 AA7 4 MET B 4 THR B 7 0 SHEET 2 AA7 4 ALA B 19 SER B 25 -1 O SER B 22 N THR B 7 SHEET 3 AA7 4 ASP B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA7 4 PHE B 62 SER B 67 -1 N SER B 63 O LYS B 74 SHEET 1 AA8 6 SER B 10 SER B 14 0 SHEET 2 AA8 6 THR B 102 LYS B 107 1 O LYS B 107 N VAL B 13 SHEET 3 AA8 6 GLY B 84 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AA8 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA8 6 ASN B 53 ARG B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 AA9 4 SER B 10 SER B 14 0 SHEET 2 AA9 4 THR B 102 LYS B 107 1 O LYS B 107 N VAL B 13 SHEET 3 AA9 4 GLY B 84 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA9 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AB1 4 SER B 114 PHE B 118 0 SHEET 2 AB1 4 THR B 129 PHE B 139 -1 O LEU B 135 N PHE B 116 SHEET 3 AB1 4 TYR B 173 SER B 182 -1 O LEU B 175 N LEU B 136 SHEET 4 AB1 4 SER B 159 VAL B 163 -1 N SER B 162 O SER B 176 SHEET 1 AB2 4 ALA B 153 LEU B 154 0 SHEET 2 AB2 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AB2 4 VAL B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 4 AB2 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SHEET 1 AB3 4 GLN H 3 GLN H 6 0 SHEET 2 AB3 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AB3 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AB3 4 VAL H 67 ASP H 72 -1 N THR H 68 O GLU H 81 SHEET 1 AB4 6 GLU H 10 LYS H 12 0 SHEET 2 AB4 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AB4 6 ALA H 88 GLY H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AB4 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AB4 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AB4 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AB5 4 GLU H 10 LYS H 12 0 SHEET 2 AB5 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AB5 4 ALA H 88 GLY H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AB5 4 PHE H 100D TRP H 103 -1 O HIS H 102 N ARG H 94 SHEET 1 AB6 4 SER H 120 LEU H 124 0 SHEET 2 AB6 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AB6 4 TYR H 176 VAL H 184 -1 O SER H 180 N CYS H 140 SHEET 4 AB6 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB7 4 SER H 120 LEU H 124 0 SHEET 2 AB7 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AB7 4 TYR H 176 VAL H 184 -1 O SER H 180 N CYS H 140 SHEET 4 AB7 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB8 2 ILE H 195 HIS H 200 0 SHEET 2 AB8 2 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AB9 4 VAL L 3 SER L 7 0 SHEET 2 AB9 4 ALA L 19 SER L 26 -1 O SER L 22 N SER L 7 SHEET 3 AB9 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AB9 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AC1 6 THR L 10 LEU L 13 0 SHEET 2 AC1 6 THR L 98 ILE L 102 1 O GLU L 101 N LEU L 11 SHEET 3 AC1 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 98 SHEET 4 AC1 6 ALA L 34 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AC1 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AC1 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AC2 4 THR L 10 LEU L 13 0 SHEET 2 AC2 4 THR L 98 ILE L 102 1 O GLU L 101 N LEU L 11 SHEET 3 AC2 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 98 SHEET 4 AC2 4 PHE L 93 PHE L 94 -1 O PHE L 93 N GLN L 90 SHEET 1 AC3 4 SER L 110 PHE L 114 0 SHEET 2 AC3 4 THR L 125 PHE L 135 -1 O LEU L 131 N PHE L 112 SHEET 3 AC3 4 TYR L 169 SER L 178 -1 O LEU L 175 N VAL L 128 SHEET 4 AC3 4 SER L 155 VAL L 159 -1 N SER L 158 O SER L 172 SHEET 1 AC4 3 LYS L 141 VAL L 146 0 SHEET 2 AC4 3 VAL L 187 THR L 193 -1 O GLU L 191 N GLN L 143 SHEET 3 AC4 3 VAL L 201 ASN L 206 -1 O VAL L 201 N VAL L 192 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.03 SSBOND 2 CYS A 139 CYS A 195 1555 1555 2.04 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.00 SSBOND 4 CYS B 134 CYS B 194 1555 1555 2.04 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 6 CYS H 140 CYS H 196 1555 1555 2.00 SSBOND 7 CYS L 23 CYS L 88 1555 1555 1.98 SSBOND 8 CYS L 130 CYS L 190 1555 1555 2.03 LINK OG SER A 75 K K A 302 1555 1555 3.16 LINK OH TYR A 79 K K A 302 1555 1555 3.43 LINK K K A 303 O HOH A 454 1555 1555 2.70 CISPEP 1 PHE A 145 PRO A 146 0 -2.42 CISPEP 2 GLU A 147 PRO A 148 0 3.16 CISPEP 3 THR B 7 PRO B 8 0 -1.73 CISPEP 4 VAL B 94 PRO B 95 0 -0.11 CISPEP 5 TYR B 140 PRO B 141 0 2.85 CISPEP 6 PHE H 146 PRO H 147 0 -3.11 CISPEP 7 GLU H 148 PRO H 149 0 0.65 CISPEP 8 SER L 7 PRO L 8 0 -3.60 CISPEP 9 TYR L 136 PRO L 137 0 3.77 CRYST1 100.016 114.417 220.969 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009998 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004526 0.00000