HEADER HYDROLASE 07-JUL-20 6XOF TITLE CRYSTAL STRUCTURE OF SCLAM, A NON-SPECIFIC ENDO-BETA-1,3(4)-GLUCANASE TITLE 2 FROM FAMILY GH16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH16 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.39; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 GENE: SCLAM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS METAGENOMICS, BETA-GLUCAN, ENDO-1, 3(4)-BETA-GLUCANASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.V.LIBERATO,A.BERNARDES,I.POLIKARPOV,F.SQUINA REVDAT 3 18-OCT-23 6XOF 1 REMARK REVDAT 2 25-AUG-21 6XOF 1 JRNL REVDAT 1 10-FEB-21 6XOF 0 JRNL AUTH M.V.LIBERATO,E.TEIXEIRA PRATES,T.A.GONCALVES,A.BERNARDES, JRNL AUTH 2 N.VILELA,J.FATTORI,G.C.EMATSU,M.CHINAGLIA,E.R.MACHI GOMES, JRNL AUTH 3 A.C.MIGLIORINI FIGUEIRA,A.DAMASIO,I.POLIKARPOV,M.S.SKAF, JRNL AUTH 4 F.M.SQUINA JRNL TITL INSIGHTS INTO THE DUAL CLEAVAGE ACTIVITY OF THE GH16 JRNL TITL 2 LAMINARINASE ENZYME CLASS ON BETA-1,3 AND BETA-1,4 JRNL TITL 3 GLYCOSIDIC BONDS. JRNL REF J.BIOL.CHEM. V. 296 00385 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33556371 JRNL DOI 10.1016/J.JBC.2021.100385 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1815 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.640 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2229 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1988 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3038 ; 1.975 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4592 ; 1.550 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 7.777 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;35.163 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;11.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.102 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2590 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1013 3.6928 15.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.0024 REMARK 3 T33: 0.0096 T12: 0.0027 REMARK 3 T13: 0.0007 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0733 L22: 0.1477 REMARK 3 L33: 0.1774 L12: 0.0981 REMARK 3 L13: -0.0341 L23: -0.0596 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.0030 S13: -0.0001 REMARK 3 S21: 0.0034 S22: -0.0042 S23: 0.0115 REMARK 3 S31: 0.0065 S32: 0.0174 S33: 0.0027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6XOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER TURBO X-RAY SOURCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : APEX 2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37616 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 3ILN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M DL-MALIC ACID, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.42750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.52750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.33650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.52750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.42750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.33650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A 135 REMARK 465 SER A 136 REMARK 465 THR A 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 41 CZ NH1 NH2 REMARK 470 LYS A 48 CD CE NZ REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 LYS A 197 CD CE NZ REMARK 470 LYS A 217 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 405 O HOH A 412 1.87 REMARK 500 O HOH A 419 O HOH A 630 1.88 REMARK 500 O HOH A 822 O HOH A 865 1.94 REMARK 500 O HOH A 402 O HOH A 416 2.02 REMARK 500 O HOH A 555 O HOH A 559 2.06 REMARK 500 O HOH A 643 O HOH A 809 2.10 REMARK 500 ND2 ASN A 54 O HOH A 401 2.10 REMARK 500 O HOH A 451 O HOH A 593 2.11 REMARK 500 O HOH A 405 O HOH A 683 2.16 REMARK 500 OG SER A 192 O HOH A 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 793 O HOH A 803 4555 2.02 REMARK 500 O HOH A 429 O HOH A 559 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 70 CD GLU A 70 OE1 -0.104 REMARK 500 GLU A 256 CD GLU A 256 OE2 -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 74.36 -165.18 REMARK 500 TYR A 109 156.50 69.93 REMARK 500 ASP A 183 63.45 33.73 REMARK 500 PHE A 225 41.08 -95.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 868 DISTANCE = 6.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 28 O REMARK 620 2 GLY A 72 O 102.6 REMARK 620 3 ASP A 258 O 86.9 100.1 REMARK 620 4 ASP A 258 OD1 161.9 90.9 78.8 REMARK 620 5 HOH A 405 O 151.8 54.1 110.9 46.0 REMARK 620 6 HOH A 539 O 91.8 159.2 95.5 78.7 107.4 REMARK 620 7 HOH A 549 O 108.6 79.9 164.2 85.4 56.3 81.3 REMARK 620 N 1 2 3 4 5 6 DBREF1 6XOF A 2 266 UNP A0A0B5H9B3_9BACT DBREF2 6XOF A A0A0B5H9B3 1 265 SEQADV 6XOF GLY A -2 UNP A0A0B5H9B EXPRESSION TAG SEQADV 6XOF SER A -1 UNP A0A0B5H9B EXPRESSION TAG SEQADV 6XOF HIS A 0 UNP A0A0B5H9B EXPRESSION TAG SEQADV 6XOF MET A 1 UNP A0A0B5H9B EXPRESSION TAG SEQRES 1 A 269 GLY SER HIS MET GLN GLN PRO GLU GLY VAL THR ALA PRO SEQRES 2 A 269 GLY ASN GLU PRO MET ALA ILE PRO SER ASP TYR LYS LEU SEQRES 3 A 269 VAL TRP ALA ASP GLU PHE ASN THR PRO GLY ALA PRO ASP SEQRES 4 A 269 ALA LYS LYS TRP ARG TYR ASP THR SER ARG ASN LYS GLU SEQRES 5 A 269 GLY TRP TYR ASN ASN GLU LEU GLN TYR TYR ALA ALA GLY SEQRES 6 A 269 ARG PRO GLU ASN VAL ARG VAL GLU ASN GLY ASN LEU VAL SEQRES 7 A 269 ILE GLU THR ARG LYS GLU ARG LEU THR SER MET ALA ASP SEQRES 8 A 269 TYR GLY GLY GLN GLU TYR SER SER GLY LYS LEU PHE THR SEQRES 9 A 269 GLN GLY LEU ALA ASP TRP GLN TYR GLY TYR VAL GLU VAL SEQRES 10 A 269 ARG ALA LYS LEU ALA CYS GLY LYS GLY MET TRP PRO ALA SEQRES 11 A 269 ILE TRP MET MET ALA SER ASP GLY SER THR GLY TRP PRO SEQRES 12 A 269 ALA LEU GLY GLU ILE ASP ILE MET GLU MET VAL ALA TRP SEQRES 13 A 269 ASP PRO THR THR ILE HIS GLY THR ILE HIS THR LYS ALA SEQRES 14 A 269 TYR ASN HIS VAL ILE HIS THR GLN LYS GLY SER ARG THR SEQRES 15 A 269 THR ALA ALA ASP PRO CYS GLY GLN PHE HIS THR TYR SER SEQRES 16 A 269 LEU ASP TRP THR LYS ASP ARG MET LEU ILE GLY VAL ASP SEQRES 17 A 269 GLY HIS ALA TYR MET ARG PHE ASP ASN ASP HIS LYS GLY SEQRES 18 A 269 ASN HIS ASP THR TRP PRO PHE ASP SER PRO GLN TYR LEU SEQRES 19 A 269 ILE LEU ASN VAL ALA ILE GLY GLY TRP GLY GLY GLN GLN SEQRES 20 A 269 GLY VAL ASP ALA ALA ALA PHE PRO SER LYS MET GLU VAL SEQRES 21 A 269 ASP TYR VAL ARG VAL TYR GLN LYS ARG HET CA A 301 1 HET GOL A 302 18 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *468(H2 O) HELIX 1 AA1 GLY A 239 GLN A 243 5 5 HELIX 2 AA2 ASP A 247 PHE A 251 5 5 SHEET 1 AA1 9 PRO A 10 PRO A 14 0 SHEET 2 AA1 9 HIS A 207 ASP A 213 -1 O ALA A 208 N GLU A 13 SHEET 3 AA1 9 ARG A 199 VAL A 204 -1 N MET A 200 O PHE A 212 SHEET 4 AA1 9 HIS A 189 TRP A 195 -1 N SER A 192 O GLY A 203 SHEET 5 AA1 9 GLY A 110 LYS A 117 -1 N VAL A 114 O TYR A 191 SHEET 6 AA1 9 SER A 253 LYS A 265 -1 O ARG A 261 N GLU A 113 SHEET 7 AA1 9 ASN A 73 LYS A 80 -1 N THR A 78 O SER A 253 SHEET 8 AA1 9 TYR A 94 SER A 96 -1 O SER A 95 N ARG A 79 SHEET 9 AA1 9 GLN A 57 TYR A 59 1 N TYR A 58 O SER A 96 SHEET 1 AA2 4 TYR A 21 ASP A 27 0 SHEET 2 AA2 4 SER A 253 LYS A 265 -1 O VAL A 262 N VAL A 24 SHEET 3 AA2 4 ASN A 73 LYS A 80 -1 N THR A 78 O SER A 253 SHEET 4 AA2 4 VAL A 67 GLU A 70 -1 N ARG A 68 O VAL A 75 SHEET 1 AA3 7 ARG A 41 TYR A 42 0 SHEET 2 AA3 7 LYS A 98 PHE A 100 -1 O PHE A 100 N ARG A 41 SHEET 3 AA3 7 GLN A 229 ILE A 237 -1 O LEU A 233 N LEU A 99 SHEET 4 AA3 7 MET A 124 ALA A 132 -1 N TRP A 129 O ILE A 232 SHEET 5 AA3 7 GLU A 144 GLU A 149 -1 O MET A 148 N ILE A 128 SHEET 6 AA3 7 THR A 157 HIS A 163 -1 O THR A 161 N ASP A 146 SHEET 7 AA3 7 LYS A 175 THR A 180 -1 O SER A 177 N GLY A 160 SSBOND 1 CYS A 120 CYS A 185 1555 1555 2.03 LINK O GLU A 28 CA CA A 301 1555 1555 2.26 LINK O GLY A 72 CA CA A 301 1555 1555 2.42 LINK O ASP A 258 CA CA A 301 1555 1555 2.32 LINK OD1 ASP A 258 CA CA A 301 1555 1555 2.48 LINK CA CA A 301 O HOH A 405 1555 1555 3.11 LINK CA CA A 301 O HOH A 539 1555 1555 2.46 LINK CA CA A 301 O HOH A 549 1555 1555 2.43 CISPEP 1 TRP A 139 PRO A 140 0 -1.60 CISPEP 2 PHE A 251 PRO A 252 0 -3.59 CRYST1 42.855 46.673 115.055 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008691 0.00000