HEADER LIGASE/LIGASE INHIBITOR 07-JUL-20 6XOO TITLE DCN1 BOUND TO DI-1859 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME, DCN1-LIKE PROTEIN 1 CHIMERA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOLYSIN,LYSIS PROTEIN,MURAMIDASE,DCUN1 DOMAIN-CONTAINING COMPND 5 PROTEIN 1,DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 1-LIKE PROTEIN 1, COMPND 6 SQUAMOUS CELL CARCINOMA-RELATED ONCOGENE; COMPND 7 EC: 3.2.1.17; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 10665, 9606; SOURCE 5 GENE: E, T4TP126, DCUN1D1, DCN1, DCUN1L1, RP42, SCCRO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, LIGASE, LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.STUCKEY REVDAT 2 18-OCT-23 6XOO 1 REMARK REVDAT 1 02-JUN-21 6XOO 0 JRNL AUTH H.ZHOU,J.LU,K.CHINNASWAMY,J.A.STUCKEY,L.LIU,D.MCEACHERN, JRNL AUTH 2 C.Y.YANG,D.BERNARD,H.SHEN,L.RUI,Y.SUN,S.WANG JRNL TITL SELECTIVE INHIBITION OF CULLIN 3 NEDDYLATION THROUGH JRNL TITL 2 COVALENT TARGETING DCN1 PROTECTS MICE FROM JRNL TITL 3 ACETAMINOPHEN-INDUCED LIVER TOXICITY. JRNL REF NAT COMMUN V. 12 2621 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33976147 JRNL DOI 10.1038/S41467-021-22924-4 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 23686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.17 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 474 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2173 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 454 REMARK 3 BIN R VALUE (WORKING SET) : 0.2161 REMARK 3 BIN FREE R VALUE : 0.2418 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.22 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 20 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2818 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.10940 REMARK 3 B22 (A**2) : -1.10230 REMARK 3 B33 (A**2) : -1.00710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.236 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.187 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.216 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.181 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2951 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4024 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1034 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 519 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2951 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 380 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3591 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.59 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|-6 - 12} REMARK 3 ORIGIN FOR THE GROUP (A): -4.8379 -6.5229 8.6363 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: -0.0888 REMARK 3 T33: -0.0388 T12: -0.0893 REMARK 3 T13: 0.0765 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 4.7008 L22: 0.0443 REMARK 3 L33: 0.0000 L12: -0.7041 REMARK 3 L13: -2.5894 L23: -1.4737 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: -0.2494 S13: 0.1019 REMARK 3 S21: -0.0818 S22: -0.0081 S23: -0.4017 REMARK 3 S31: -0.0301 S32: 0.1505 S33: 0.0580 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|13 - 100} REMARK 3 ORIGIN FOR THE GROUP (A): -7.2773 -16.2371 10.2806 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: -0.0797 REMARK 3 T33: -0.1317 T12: -0.1079 REMARK 3 T13: 0.0261 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.3863 L22: 2.6334 REMARK 3 L33: 5.8212 L12: -2.5576 REMARK 3 L13: 3.9233 L23: -2.6472 REMARK 3 S TENSOR REMARK 3 S11: 0.5049 S12: -0.4311 S13: -0.1965 REMARK 3 S21: -0.6129 S22: -0.1234 S23: -0.0866 REMARK 3 S31: 0.8071 S32: -0.4500 S33: -0.3815 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|101 - 1064} REMARK 3 ORIGIN FOR THE GROUP (A): -18.5737 -1.7737 1.2391 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: -0.1231 REMARK 3 T33: -0.0406 T12: -0.0473 REMARK 3 T13: 0.1029 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.6268 L22: 2.4959 REMARK 3 L33: 7.2469 L12: 0.0120 REMARK 3 L13: 1.6919 L23: 1.0219 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: -0.0352 S13: 0.0838 REMARK 3 S21: -0.2670 S22: -0.3506 S23: 0.3238 REMARK 3 S31: 0.6911 S32: -0.5851 S33: 0.2254 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|1065 - 1251} REMARK 3 ORIGIN FOR THE GROUP (A): -23.3462 -7.8876 39.4488 REMARK 3 T TENSOR REMARK 3 T11: -0.0935 T22: -0.0629 REMARK 3 T33: -0.0966 T12: 0.0813 REMARK 3 T13: -0.0153 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 1.3429 L22: 1.8791 REMARK 3 L33: 1.7789 L12: 0.5740 REMARK 3 L13: -0.7981 L23: -1.1623 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.0047 S13: -0.0375 REMARK 3 S21: 0.0365 S22: -0.0134 S23: -0.0768 REMARK 3 S31: -0.0881 S32: -0.0031 S33: -0.0402 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XOO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5V83 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-33% PEG 3350, 200 MM AMMONIUM REMARK 280 FORMATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.27700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.43250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.27700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.43250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 SER A -2 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 SER A 36 REMARK 465 PRO A 37 REMARK 465 ALA A 1252 REMARK 465 GLY A 1253 REMARK 465 THR A 1254 REMARK 465 LYS A 1255 REMARK 465 SER A 1256 REMARK 465 THR A 1257 REMARK 465 THR A 1258 REMARK 465 VAL A 1259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A -5 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A -1 CG OD1 ND2 REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 TYR A 25 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 139 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 470 ARG A1062 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1076 CG CD OE1 NE2 REMARK 470 LYS A1080 CE NZ REMARK 470 GLN A1120 CG CD OE1 NE2 REMARK 470 GLU A1135 CG CD OE1 OE2 REMARK 470 LYS A1191 CG CD CE NZ REMARK 470 ARG A1206 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1232 CG CD OE1 OE2 REMARK 470 GLU A1233 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 0 -25.05 98.10 REMARK 500 PHE A 114 46.38 -84.57 REMARK 500 PHE A1117 100.85 -160.05 REMARK 500 HIS A1204 -61.27 -98.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1668 DISTANCE = 6.92 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H8S A 1301 DBREF 6XOO A 1 164 UNP D9IEF7 D9IEF7_BPT4 1 164 DBREF 6XOO A 1062 1259 UNP Q96GG9 DCNL1_HUMAN 62 259 SEQADV 6XOO MET A -23 UNP D9IEF7 INITIATING METHIONINE SEQADV 6XOO HIS A -22 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO HIS A -21 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO HIS A -20 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO HIS A -19 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO HIS A -18 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO HIS A -17 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO SER A -16 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO SER A -15 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO GLY A -14 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO VAL A -13 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO ASP A -12 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO LEU A -11 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO GLY A -10 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO THR A -9 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO GLU A -8 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO ASN A -7 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO LEU A -6 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO TYR A -5 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO PHE A -4 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO GLN A -3 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO SER A -2 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO ASN A -1 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO ALA A 0 UNP D9IEF7 EXPRESSION TAG SEQADV 6XOO THR A 54 UNP D9IEF7 CYS 54 ENGINEERED MUTATION SEQADV 6XOO ALA A 97 UNP D9IEF7 CYS 97 ENGINEERED MUTATION SEQADV 6XOO ALA A 127 UNP D9IEF7 ASP 127 ENGINEERED MUTATION SEQADV 6XOO THR A 146 UNP D9IEF7 ALA 146 ENGINEERED MUTATION SEQADV 6XOO ALA A 154 UNP D9IEF7 ARG 154 ENGINEERED MUTATION SEQRES 1 A 386 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 386 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET ASN SEQRES 3 A 386 ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU SEQRES 4 A 386 LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR ILE GLY SEQRES 5 A 386 ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU ASN ALA SEQRES 6 A 386 ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN THR SEQRES 7 A 386 ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE SEQRES 8 A 386 ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG SEQRES 9 A 386 ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA SEQRES 10 A 386 VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE GLN MET SEQRES 11 A 386 GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER LEU ARG SEQRES 12 A 386 MET LEU GLN GLN LYS ARG TRP ALA GLU ALA ALA VAL ASN SEQRES 13 A 386 LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO ASN ARG SEQRES 14 A 386 THR LYS ARG VAL ILE THR THR PHE ALA THR GLY THR TRP SEQRES 15 A 386 ASP ALA TYR LYS ASN LEU ARG LYS LYS LEU GLU GLN LEU SEQRES 16 A 386 TYR ASN ARG TYR LYS ASP PRO GLN ASP GLU ASN LYS ILE SEQRES 17 A 386 GLY ILE ASP GLY ILE GLN GLN PHE CYS ASP ASP LEU ALA SEQRES 18 A 386 LEU ASP PRO ALA SER ILE SER VAL LEU ILE ILE ALA TRP SEQRES 19 A 386 LYS PHE ARG ALA ALA THR GLN CYS GLU PHE SER LYS GLN SEQRES 20 A 386 GLU PHE MET ASP GLY MET THR GLU LEU GLY CYS ASP SER SEQRES 21 A 386 ILE GLU LYS LEU LYS ALA GLN ILE PRO LYS MET GLU GLN SEQRES 22 A 386 GLU LEU LYS GLU PRO GLY ARG PHE LYS ASP PHE TYR GLN SEQRES 23 A 386 PHE THR PHE ASN PHE ALA LYS ASN PRO GLY GLN LYS GLY SEQRES 24 A 386 LEU ASP LEU GLU MET ALA ILE ALA TYR TRP ASN LEU VAL SEQRES 25 A 386 LEU ASN GLY ARG PHE LYS PHE LEU ASP LEU TRP ASN LYS SEQRES 26 A 386 PHE LEU LEU GLU HIS HIS LYS ARG SER ILE PRO LYS ASP SEQRES 27 A 386 THR TRP ASN LEU LEU LEU ASP PHE SER THR MET ILE ALA SEQRES 28 A 386 ASP ASP MET SER ASN TYR ASP GLU GLU GLY ALA TRP PRO SEQRES 29 A 386 VAL LEU ILE ASP ASP PHE VAL GLU PHE ALA ARG PRO GLN SEQRES 30 A 386 ILE ALA GLY THR LYS SER THR THR VAL HET H8S A1301 75 HETNAM H8S N-{(1S)-1-CYCLOHEXYL-2-[(2-METHYLPROPANOYL) HETNAM 2 H8S AMINO]ETHYL}-N~2~-PROPANOYL-3-[6-(PROPAN-2-YL)-1,3- HETNAM 3 H8S BENZOTHIAZOL-2-YL]-L-ALANINAMIDE FORMUL 2 H8S C28 H42 N4 O3 S FORMUL 3 HOH *268(H2 O) HELIX 1 AA1 ALA A 0 GLU A 11 1 12 HELIX 2 AA2 LEU A 39 GLY A 51 1 13 HELIX 3 AA3 THR A 59 ASN A 81 1 23 HELIX 4 AA4 LEU A 84 LEU A 91 1 8 HELIX 5 AA5 ASP A 92 GLY A 113 1 22 HELIX 6 AA6 PHE A 114 GLN A 123 1 10 HELIX 7 AA7 ARG A 125 ALA A 134 1 10 HELIX 8 AA8 SER A 136 THR A 142 1 7 HELIX 9 AA9 THR A 142 GLY A 156 1 15 HELIX 10 AB1 TRP A 158 TYR A 1072 1 18 HELIX 11 AB2 GLY A 1082 LEU A 1093 1 12 HELIX 12 AB3 SER A 1099 PHE A 1109 1 11 HELIX 13 AB4 LYS A 1119 LEU A 1129 1 11 HELIX 14 AB5 SER A 1133 LEU A 1148 1 16 HELIX 15 AB6 GLU A 1150 LYS A 1166 1 17 HELIX 16 AB7 ASP A 1174 LEU A 1186 1 13 HELIX 17 AB8 PHE A 1192 HIS A 1204 1 13 HELIX 18 AB9 PRO A 1209 ILE A 1223 1 15 HELIX 19 AC1 PRO A 1237 ARG A 1248 1 12 SHEET 1 AA1 3 ARG A 14 LYS A 19 0 SHEET 2 AA1 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 AA1 3 HIS A 31 LEU A 32 -1 O HIS A 31 N ILE A 27 SHEET 1 AA2 3 LYS A1073 ASP A1074 0 SHEET 2 AA2 3 ASP A1077 ILE A1081 -1 O LYS A1080 N ASP A1074 SHEET 3 AA2 3 PHE A1117 SER A1118 -1 O PHE A1117 N ILE A1081 LINK SG CYS A1115 C19 H8S A1301 1555 1555 1.85 SITE 1 AC1 15 ILE A1086 PHE A1089 PRO A1097 ALA A1098 SITE 2 AC1 15 SER A1099 VAL A1102 ALA A1106 GLN A1114 SITE 3 AC1 15 CYS A1115 GLU A1116 PHE A1117 PHE A1164 SITE 4 AC1 15 ALA A1180 TYR A1181 LEU A1184 CRYST1 34.020 86.865 126.554 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007902 0.00000