HEADER HYDROLASE 08-JUL-20 6XPB TITLE STRUCTURE OF HUMAN GGT1 IN COMPLEX WITH 2-AMINO-4-(((1- TITLE 2 ((CARBOXYMETHYL)AMINO)-1-OXOBUTAN-2-YL)OXY)(PHENOXY)PHOSPHORYL) TITLE 3 BUTANOIC ACID (ACPB) MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE HYDROLASE 1 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GGT 1,GAMMA-GLUTAMYLTRANSFERASE 1,GLUTATHIONE HYDROLASE 1, COMPND 5 LEUKOTRIENE-C4 HYDROLASE; COMPND 6 EC: 3.4.19.13,2.3.2.2,3.4.19.14; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GLUTATHIONE HYDROLASE 1 LIGHT CHAIN; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: GGT 1,GAMMA-GLUTAMYLTRANSFERASE 1,GLUTATHIONE HYDROLASE 1, COMPND 13 LEUKOTRIENE-C4 HYDROLASE; COMPND 14 EC: 3.4.19.13,2.3.2.2,3.4.19.14; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GGT1, GGT; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAZMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZAA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: GGT1, GGT; SOURCE 16 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAZMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PPICZAA KEYWDS INHIBITOR-ENZYME COMPLEX, NTN-HYDROLASE FAMILY, GLYCOPROTEIN, N- KEYWDS 2 GLYCOSYLATION, CELL SURFACE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.S.TERZYAN,M.H.HANIGAN REVDAT 3 18-OCT-23 6XPB 1 REMARK REVDAT 2 21-JUL-21 6XPB 1 COMPND JRNL REMARK FORMUL REVDAT 2 2 1 LINK REVDAT 1 25-NOV-20 6XPB 0 JRNL AUTH S.S.TERZYAN,L.T.NGUYEN,A.W.G.BURGETT,A.HEROUX,C.A.SMITH, JRNL AUTH 2 Y.YOU,M.H.HANIGAN JRNL TITL CRYSTAL STRUCTURES OF GLUTATHIONE- AND INHIBITOR-BOUND HUMAN JRNL TITL 2 GGT1: CRITICAL INTERACTIONS WITHIN THE CYSTEINYLGLYCINE JRNL TITL 3 BINDING SITE. JRNL REF J.BIOL.CHEM. V. 296 00066 2020 JRNL REFN ESSN 1083-351X JRNL PMID 33187988 JRNL DOI 10.1074/JBC.RA120.016265 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 66262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3533 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 644 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4450 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6094 ; 1.608 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 591 ; 5.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;35.124 ;23.351 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;14.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;18.555 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 713 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3402 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6XPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 64.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4GDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG3350, 0.1M AMMONIUM REMARK 280 CHLORIDE, 0.1M SODIUM CACODILATE PH6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.11600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.11600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.18100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.10900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.18100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.10900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.11600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.18100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.10900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.11600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.18100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.10900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 891 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 989 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1072 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 PRO A 33 REMARK 465 ASP A 34 REMARK 465 ASP A 377 REMARK 465 ASP A 378 REMARK 465 GLY A 379 REMARK 465 GLY A 380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 230 C2 NAG A 605 2.00 REMARK 500 NE ARG B 466 O HOH B 1201 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 466 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 230 56.98 -158.17 REMARK 500 ASN B 401 -115.28 87.79 REMARK 500 ASN B 419 50.73 -117.62 REMARK 500 CYS B 454 61.78 -153.75 REMARK 500 CYS B 454 69.17 -157.49 REMARK 500 LEU B 508 -53.87 78.76 REMARK 500 THR B 539 -84.01 -117.51 REMARK 500 ALA B 542 173.76 66.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1123 DISTANCE = 6.42 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 V7D B 604 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1045 O REMARK 620 2 ALA B 556 O 153.0 REMARK 620 3 HOH B1303 O 100.6 106.1 REMARK 620 N 1 2 DBREF 6XPB A 28 380 UNP P19440 GGT1_HUMAN 28 380 DBREF 6XPB B 381 569 UNP P19440 GGT1_HUMAN 381 569 SEQADV 6XPB ALA A 272 UNP P19440 VAL 272 CONFLICT SEQRES 1 A 353 SER ALA SER LYS GLU PRO ASP ASN HIS VAL TYR THR ARG SEQRES 2 A 353 ALA ALA VAL ALA ALA ASP ALA LYS GLN CYS SER LYS ILE SEQRES 3 A 353 GLY ARG ASP ALA LEU ARG ASP GLY GLY SER ALA VAL ASP SEQRES 4 A 353 ALA ALA ILE ALA ALA LEU LEU CYS VAL GLY LEU MET ASN SEQRES 5 A 353 ALA HIS SER MET GLY ILE GLY GLY GLY LEU PHE LEU THR SEQRES 6 A 353 ILE TYR ASN SER THR THR ARG LYS ALA GLU VAL ILE ASN SEQRES 7 A 353 ALA ARG GLU VAL ALA PRO ARG LEU ALA PHE ALA THR MET SEQRES 8 A 353 PHE ASN SER SER GLU GLN SER GLN LYS GLY GLY LEU SER SEQRES 9 A 353 VAL ALA VAL PRO GLY GLU ILE ARG GLY TYR GLU LEU ALA SEQRES 10 A 353 HIS GLN ARG HIS GLY ARG LEU PRO TRP ALA ARG LEU PHE SEQRES 11 A 353 GLN PRO SER ILE GLN LEU ALA ARG GLN GLY PHE PRO VAL SEQRES 12 A 353 GLY LYS GLY LEU ALA ALA ALA LEU GLU ASN LYS ARG THR SEQRES 13 A 353 VAL ILE GLU GLN GLN PRO VAL LEU CYS GLU VAL PHE CYS SEQRES 14 A 353 ARG ASP ARG LYS VAL LEU ARG GLU GLY GLU ARG LEU THR SEQRES 15 A 353 LEU PRO GLN LEU ALA ASP THR TYR GLU THR LEU ALA ILE SEQRES 16 A 353 GLU GLY ALA GLN ALA PHE TYR ASN GLY SER LEU THR ALA SEQRES 17 A 353 GLN ILE VAL LYS ASP ILE GLN ALA ALA GLY GLY ILE VAL SEQRES 18 A 353 THR ALA GLU ASP LEU ASN ASN TYR ARG ALA GLU LEU ILE SEQRES 19 A 353 GLU HIS PRO LEU ASN ILE SER LEU GLY ASP ALA VAL LEU SEQRES 20 A 353 TYR MET PRO SER ALA PRO LEU SER GLY PRO VAL LEU ALA SEQRES 21 A 353 LEU ILE LEU ASN ILE LEU LYS GLY TYR ASN PHE SER ARG SEQRES 22 A 353 GLU SER VAL GLU SER PRO GLU GLN LYS GLY LEU THR TYR SEQRES 23 A 353 HIS ARG ILE VAL GLU ALA PHE ARG PHE ALA TYR ALA LYS SEQRES 24 A 353 ARG THR LEU LEU GLY ASP PRO LYS PHE VAL ASP VAL THR SEQRES 25 A 353 GLU VAL VAL ARG ASN MET THR SER GLU PHE PHE ALA ALA SEQRES 26 A 353 GLN LEU ARG ALA GLN ILE SER ASP ASP THR THR HIS PRO SEQRES 27 A 353 ILE SER TYR TYR LYS PRO GLU PHE TYR THR PRO ASP ASP SEQRES 28 A 353 GLY GLY SEQRES 1 B 189 THR ALA HIS LEU SER VAL VAL ALA GLU ASP GLY SER ALA SEQRES 2 B 189 VAL SER ALA THR SER THR ILE ASN LEU TYR PHE GLY SER SEQRES 3 B 189 LYS VAL ARG SER PRO VAL SER GLY ILE LEU PHE ASN ASN SEQRES 4 B 189 GLU MET ASP ASP PHE SER SER PRO SER ILE THR ASN GLU SEQRES 5 B 189 PHE GLY VAL PRO PRO SER PRO ALA ASN PHE ILE GLN PRO SEQRES 6 B 189 GLY LYS GLN PRO LEU SER SER MET CYS PRO THR ILE MET SEQRES 7 B 189 VAL GLY GLN ASP GLY GLN VAL ARG MET VAL VAL GLY ALA SEQRES 8 B 189 ALA GLY GLY THR GLN ILE THR THR ALA THR ALA LEU ALA SEQRES 9 B 189 ILE ILE TYR ASN LEU TRP PHE GLY TYR ASP VAL LYS ARG SEQRES 10 B 189 ALA VAL GLU GLU PRO ARG LEU HIS ASN GLN LEU LEU PRO SEQRES 11 B 189 ASN VAL THR THR VAL GLU ARG ASN ILE ASP GLN ALA VAL SEQRES 12 B 189 THR ALA ALA LEU GLU THR ARG HIS HIS HIS THR GLN ILE SEQRES 13 B 189 ALA SER THR PHE ILE ALA VAL VAL GLN ALA ILE VAL ARG SEQRES 14 B 189 THR ALA GLY GLY TRP ALA ALA ALA SER ASP SER ARG LYS SEQRES 15 B 189 GLY GLY GLU PRO ALA GLY TYR HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 605 14 HET CL A 606 1 HET NA B 601 1 HET NAG B 602 14 HET CL B 603 1 HET V7D B 604 21 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM V7D 2,2-DIAMINO-4-[(S)-({(2S)-1-[(CARBOXYMETHYL)AMINO]-1- HETNAM 2 V7D OXOBUTAN-2-YL}OXY)(HYDROXY)PHOSPHANYL]BUTANOIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 8 CL 2(CL 1-) FORMUL 9 NA NA 1+ FORMUL 12 V7D C16 H24 N3 O7 P FORMUL 13 HOH *644(H2 O) HELIX 1 AA1 ALA A 47 ASP A 60 1 14 HELIX 2 AA2 SER A 63 ASN A 79 1 17 HELIX 3 AA3 SER A 121 LYS A 127 1 7 HELIX 4 AA4 GLY A 128 VAL A 132 5 5 HELIX 5 AA5 GLY A 136 GLY A 149 1 14 HELIX 6 AA6 PRO A 152 GLY A 167 1 16 HELIX 7 AA7 GLY A 171 LYS A 181 1 11 HELIX 8 AA8 LYS A 181 GLN A 187 1 7 HELIX 9 AA9 GLN A 188 PHE A 195 1 8 HELIX 10 AB1 LEU A 210 GLY A 224 1 15 HELIX 11 AB2 ALA A 225 ASN A 230 1 6 HELIX 12 AB3 LEU A 233 ALA A 244 1 12 HELIX 13 AB4 THR A 249 TYR A 256 1 8 HELIX 14 AB5 SER A 282 GLY A 295 1 14 HELIX 15 AB6 SER A 299 GLU A 304 5 6 HELIX 16 AB7 SER A 305 THR A 328 1 24 HELIX 17 AB8 VAL A 338 THR A 346 1 9 HELIX 18 AB9 SER A 347 ALA A 356 1 10 HELIX 19 AC1 PRO A 365 LYS A 370 5 6 HELIX 20 AC2 ASN B 419 PHE B 424 5 6 HELIX 21 AC3 SER B 438 PHE B 442 5 5 HELIX 22 AC4 THR B 475 TRP B 490 1 16 HELIX 23 AC5 ASP B 494 GLU B 501 1 8 HELIX 24 AC6 ASP B 520 ARG B 530 1 11 SHEET 1 AA1 7 VAL A 37 TYR A 38 0 SHEET 2 AA1 7 GLY B 553 SER B 558 -1 O TRP B 554 N TYR A 38 SHEET 3 AA1 7 VAL B 543 THR B 550 -1 N THR B 550 O GLY B 553 SHEET 4 AA1 7 VAL B 465 ALA B 472 -1 N VAL B 468 O ILE B 547 SHEET 5 AA1 7 THR B 456 GLY B 460 -1 N MET B 458 O MET B 467 SHEET 6 AA1 7 ALA A 272 MET A 276 -1 N TYR A 275 O ILE B 457 SHEET 7 AA1 7 LEU A 265 LEU A 269 -1 N ILE A 267 O LEU A 274 SHEET 1 AA2 7 GLU A 259 ILE A 261 0 SHEET 2 AA2 7 LYS A 100 ALA A 106 -1 N VAL A 103 O ILE A 261 SHEET 3 AA2 7 GLY A 88 ASN A 95 -1 N ILE A 93 O GLU A 102 SHEET 4 AA2 7 ALA B 393 THR B 399 -1 O SER B 395 N THR A 92 SHEET 5 AA2 7 ALA B 382 VAL B 387 -1 N LEU B 384 O ALA B 396 SHEET 6 AA2 7 ALA A 42 ALA A 44 -1 N ALA A 44 O SER B 385 SHEET 7 AA2 7 ALA B 567 GLY B 568 -1 O ALA B 567 N VAL A 43 SHEET 1 AA3 2 PHE A 168 PRO A 169 0 SHEET 2 AA3 2 ARG A 207 LEU A 208 -1 O LEU A 208 N PHE A 168 SHEET 1 AA4 2 CYS A 196 ARG A 197 0 SHEET 2 AA4 2 LYS A 200 VAL A 201 -1 O LYS A 200 N ARG A 197 SHEET 1 AA5 3 LEU B 504 HIS B 505 0 SHEET 2 AA5 3 THR B 513 VAL B 515 -1 O THR B 514 N HIS B 505 SHEET 3 AA5 3 THR B 534 ILE B 536 1 O GLN B 535 N VAL B 515 SSBOND 1 CYS A 50 CYS A 74 1555 1555 2.15 SSBOND 2 CYS A 192 CYS A 196 1555 1555 2.11 LINK ND2 ASN A 95 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN A 120 C1 NAG A 602 1555 1555 1.45 LINK ND2 ASN A 230 C1 NAG A 605 1555 1555 1.51 LINK ND2 ASN A 266 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN A 344 C1 NAG A 603 1555 1555 1.44 LINK OG1 THR B 381 PAI V7D B 604 1555 1555 1.61 LINK ND2 ASN B 511 C1 NAG B 602 1555 1555 1.44 LINK O HOH A1045 NA NA B 601 1555 1555 3.16 LINK O ALA B 556 NA NA B 601 1555 1555 2.94 LINK NA NA B 601 O HOH B1303 1555 1555 2.70 CISPEP 1 ALA A 279 PRO A 280 0 16.69 CISPEP 2 LEU B 509 PRO B 510 0 3.47 CRYST1 106.362 124.218 104.232 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009594 0.00000