HEADER SIGNALING PROTEIN 09-JUL-20 6XQ7 TITLE RECEPTOR FOR ADVANCED GLYCATION END PRODUCTS VC1 DOMAIN IN COMPLEX TITLE 2 WITH FRAGMENT 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VC1 DOMAIN, RESDUES 23-231; COMPND 5 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGER, RAGE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAGE, IG-LIKE DOMAIN, RECEPTOR, ADVANCED GLYCATION END PRODUCTS, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.E.SALAY,N.KOZLYUK,B.A.GILSTON,R.D.GOGLIOTTI,P.P.CHRISTOV,K.KIM, AUTHOR 2 M.OVEE,A.G.WATERSON,W.J.CHAZIN REVDAT 7 18-OCT-23 6XQ7 1 REMARK REVDAT 6 15-DEC-21 6XQ7 1 AUTHOR JRNL REVDAT 5 20-OCT-21 6XQ7 1 JRNL REVDAT 4 11-AUG-21 6XQ7 1 REMARK REVDAT 3 04-AUG-21 6XQ7 1 JRNL REVDAT 2 28-JUL-21 6XQ7 1 JRNL REVDAT 1 14-JUL-21 6XQ7 0 JRNL AUTH N.KOZLYUK,B.A.GILSTON,L.E.SALAY,R.D.GOGLIOTTI,P.P.CHRISTOV, JRNL AUTH 2 K.KIM,M.OVEE,A.G.WATERSON,W.J.CHAZIN JRNL TITL A FRAGMENT-BASED APPROACH TO DISCOVERY OF RECEPTOR FOR JRNL TITL 2 ADVANCED GLYCATION END PRODUCTS INHIBITORS. JRNL REF PROTEINS V. 89 1399 2021 JRNL REFN ESSN 1097-0134 JRNL PMID 34156100 JRNL DOI 10.1002/PROT.26162 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 56542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9200 - 4.8800 0.98 2686 142 0.1972 0.2042 REMARK 3 2 4.8800 - 3.8700 1.00 2704 152 0.1656 0.1863 REMARK 3 3 3.8700 - 3.3800 1.00 2704 150 0.1789 0.2097 REMARK 3 4 3.3800 - 3.0800 1.00 2690 153 0.2137 0.2268 REMARK 3 5 3.0800 - 2.8600 1.00 2692 140 0.2206 0.2453 REMARK 3 6 2.8500 - 2.6900 1.00 2722 127 0.2190 0.2388 REMARK 3 7 2.6900 - 2.5500 1.00 2704 127 0.2146 0.2284 REMARK 3 8 2.5500 - 2.4400 1.00 2712 106 0.2181 0.2592 REMARK 3 9 2.4400 - 2.3500 1.00 2701 135 0.2129 0.2600 REMARK 3 10 2.3500 - 2.2700 1.00 2693 154 0.2108 0.2083 REMARK 3 11 2.2700 - 2.2000 1.00 2646 160 0.2022 0.1939 REMARK 3 12 2.2000 - 2.1300 1.00 2719 147 0.1936 0.2468 REMARK 3 13 2.1300 - 2.0800 1.00 2675 142 0.1917 0.2412 REMARK 3 14 2.0800 - 2.0300 1.00 2664 159 0.2009 0.2221 REMARK 3 15 2.0300 - 1.9800 1.00 2689 134 0.2070 0.2493 REMARK 3 16 1.9800 - 1.9400 1.00 2693 137 0.1901 0.2742 REMARK 3 17 1.9400 - 1.9000 1.00 2700 119 0.1951 0.2247 REMARK 3 18 1.9000 - 1.8600 1.00 2707 131 0.2109 0.2028 REMARK 3 19 1.8600 - 1.8300 1.00 2696 118 0.2206 0.2892 REMARK 3 20 1.8300 - 1.8000 0.96 2545 167 0.2388 0.2953 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.208 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.038 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3335 REMARK 3 ANGLE : 1.622 4585 REMARK 3 CHIRALITY : 0.111 496 REMARK 3 PLANARITY : 0.011 609 REMARK 3 DIHEDRAL : 18.114 1170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 20 through 23 or REMARK 3 resid 25 through 26 or resid 28 through REMARK 3 31 or resid 33 through 49 or (resid 50 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 51 through 91 or REMARK 3 resid 93 or resid 95 through 111 or resid REMARK 3 113 through 139 or (resid 140 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 141 through 145 or resid 147 REMARK 3 through 159 or (resid 160 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 161 through 200 or (resid 201 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 202 through 230 REMARK 3 or (resid 231 and (name N or name CA or REMARK 3 name C or name O or name CB )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 20 through 23 or REMARK 3 resid 25 through 26 or resid 28 through REMARK 3 31 or resid 33 through 36 or (resid 37 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 38 through 42 or REMARK 3 (resid 43 through 44 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 45 through 91 or resid 93 or resid REMARK 3 95 through 99 or (resid 100 through 102 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 103 through 111 REMARK 3 or resid 113 through 145 or resid 147 REMARK 3 through 161 or (resid 162 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 163 through 177 or (resid 178 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 179 through 181 REMARK 3 or (resid 182 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 183 through 231)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M NAOAC (PH 7.5), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.84600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.92300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.84600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.92300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 102.90500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 102.90500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 33.92300 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 33.92300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 GLN A 100 CG CD OE1 NE2 REMARK 470 MET A 102 CG SD CE REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 105 CG OD1 ND2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASP A 128 CG OD1 OD2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ASN A 167 CG OD1 ND2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 226 CG CD OE1 NE2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 GLN B 67 CG CD OE1 NE2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 105 CG OD1 ND2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 ASP B 128 CG OD1 OD2 REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 ASP B 160 CG OD1 OD2 REMARK 470 ASN B 167 CG OD1 ND2 REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 ARG B 198 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 201 CG OD1 OD2 REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 218 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 226 CG CD OE1 NE2 REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 37 O HOH B 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 60 -144.16 60.32 REMARK 500 PRO A 151 -175.38 -62.78 REMARK 500 ALA B 60 -144.04 60.73 REMARK 500 PRO B 151 -175.19 -62.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 515 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 497 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V6V A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V6V A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V6V B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V6V B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V6V B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V6V B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V6V B 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6XQ1 RELATED DB: PDB REMARK 900 RAGE VC1 WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 6XQ3 RELATED DB: PDB REMARK 900 RAGE VC1 WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 6XQ5 RELATED DB: PDB REMARK 900 RAGE VC1 WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 6XQ6 RELATED DB: PDB REMARK 900 RAGE VC1 WITH DIFFERENT LIGAND DBREF 6XQ7 A 23 231 UNP Q15109 RAGE_HUMAN 23 231 DBREF 6XQ7 B 23 231 UNP Q15109 RAGE_HUMAN 23 231 SEQADV 6XQ7 GLY A 20 UNP Q15109 EXPRESSION TAG SEQADV 6XQ7 ALA A 21 UNP Q15109 EXPRESSION TAG SEQADV 6XQ7 MET A 22 UNP Q15109 EXPRESSION TAG SEQADV 6XQ7 GLY B 20 UNP Q15109 EXPRESSION TAG SEQADV 6XQ7 ALA B 21 UNP Q15109 EXPRESSION TAG SEQADV 6XQ7 MET B 22 UNP Q15109 EXPRESSION TAG SEQRES 1 A 212 GLY ALA MET ALA GLN ASN ILE THR ALA ARG ILE GLY GLU SEQRES 2 A 212 PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS PRO SEQRES 3 A 212 PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG THR SEQRES 4 A 212 GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY PRO SEQRES 5 A 212 TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER LEU SEQRES 6 A 212 PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE PHE SEQRES 7 A 212 ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR LYS SEQRES 8 A 212 SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY LYS SEQRES 9 A 212 PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA GLY SEQRES 10 A 212 VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SER SEQRES 11 A 212 TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY LYS SEQRES 12 A 212 PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS GLU SEQRES 13 A 212 GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR LEU SEQRES 14 A 212 GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY ASP SEQRES 15 A 212 PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY LEU SEQRES 16 A 212 PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN PRO SEQRES 17 A 212 ARG VAL TRP GLU SEQRES 1 B 212 GLY ALA MET ALA GLN ASN ILE THR ALA ARG ILE GLY GLU SEQRES 2 B 212 PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS PRO SEQRES 3 B 212 PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG THR SEQRES 4 B 212 GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY PRO SEQRES 5 B 212 TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER LEU SEQRES 6 B 212 PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE PHE SEQRES 7 B 212 ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR LYS SEQRES 8 B 212 SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY LYS SEQRES 9 B 212 PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA GLY SEQRES 10 B 212 VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SER SEQRES 11 B 212 TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY LYS SEQRES 12 B 212 PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS GLU SEQRES 13 B 212 GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR LEU SEQRES 14 B 212 GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY ASP SEQRES 15 B 212 PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY LEU SEQRES 16 B 212 PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN PRO SEQRES 17 B 212 ARG VAL TRP GLU HET ACT A 301 4 HET ACT A 302 4 HET ACT A 303 4 HET ACT A 304 4 HET ACT A 305 4 HET V6V A 306 14 HET V6V A 307 14 HET ACT B 301 4 HET ACT B 302 4 HET ACT B 303 4 HET ACT B 304 4 HET CL B 305 1 HET CL B 306 1 HET V6V B 307 14 HET V6V B 308 14 HET V6V B 309 14 HET V6V B 310 14 HET V6V B 311 14 HETNAM ACT ACETATE ION HETNAM V6V 5-BROMO-3-METHYL-1H-INDOLE-2-CARBOXYLIC ACID HETNAM CL CHLORIDE ION FORMUL 3 ACT 9(C2 H3 O2 1-) FORMUL 8 V6V 7(C10 H8 BR N O2) FORMUL 14 CL 2(CL 1-) FORMUL 21 HOH *212(H2 O) HELIX 1 AA1 GLY A 70 VAL A 75 5 6 HELIX 2 AA2 GLY A 90 ASP A 93 5 4 HELIX 3 AA3 GLY B 70 VAL B 75 5 6 HELIX 4 AA4 GLY B 90 ASP B 93 5 4 SHEET 1 AA1 5 GLN A 24 ARG A 29 0 SHEET 2 AA1 5 GLU A 108 TYR A 118 1 O ASN A 112 N GLN A 24 SHEET 3 AA1 5 GLY A 95 MET A 102 -1 N GLY A 95 O VAL A 115 SHEET 4 AA1 5 ARG A 48 THR A 55 -1 N LYS A 52 O ARG A 98 SHEET 5 AA1 5 LYS A 62 LEU A 64 -1 O LEU A 64 N TRP A 51 SHEET 1 AA2 3 LEU A 34 LEU A 36 0 SHEET 2 AA2 3 LEU A 84 LEU A 86 -1 O LEU A 84 N LEU A 36 SHEET 3 AA2 3 ARG A 77 VAL A 78 -1 N ARG A 77 O PHE A 85 SHEET 1 AA3 4 GLU A 125 VAL A 127 0 SHEET 2 AA3 4 ASN A 139 SER A 149 -1 O THR A 143 N VAL A 127 SHEET 3 AA3 4 PHE A 186 VAL A 194 -1 O SER A 190 N CYS A 144 SHEET 4 AA3 4 VAL A 171 ARG A 179 -1 N SER A 172 O MET A 193 SHEET 1 AA4 2 GLU A 132 THR A 134 0 SHEET 2 AA4 2 ARG A 228 TRP A 230 1 O ARG A 228 N LEU A 133 SHEET 1 AA5 4 LYS A 162 PRO A 163 0 SHEET 2 AA5 4 THR A 154 LEU A 159 -1 N LEU A 159 O LYS A 162 SHEET 3 AA5 4 PHE A 206 SER A 211 -1 O SER A 207 N HIS A 158 SHEET 4 AA5 4 LEU A 220 ARG A 221 -1 O LEU A 220 N PHE A 210 SHEET 1 AA6 5 GLN B 24 ARG B 29 0 SHEET 2 AA6 5 GLU B 108 TYR B 118 1 O ARG B 114 N ILE B 26 SHEET 3 AA6 5 GLY B 95 MET B 102 -1 N GLY B 95 O VAL B 115 SHEET 4 AA6 5 ARG B 48 THR B 55 -1 N LYS B 52 O ARG B 98 SHEET 5 AA6 5 LYS B 62 LEU B 64 -1 O LEU B 64 N TRP B 51 SHEET 1 AA7 3 LEU B 34 LEU B 36 0 SHEET 2 AA7 3 LEU B 84 LEU B 86 -1 O LEU B 84 N LEU B 36 SHEET 3 AA7 3 ARG B 77 VAL B 78 -1 N ARG B 77 O PHE B 85 SHEET 1 AA8 4 GLU B 125 VAL B 127 0 SHEET 2 AA8 4 ASN B 139 SER B 149 -1 O THR B 143 N VAL B 127 SHEET 3 AA8 4 PHE B 186 VAL B 194 -1 O SER B 190 N CYS B 144 SHEET 4 AA8 4 VAL B 171 ARG B 179 -1 N SER B 172 O MET B 193 SHEET 1 AA9 2 GLU B 132 THR B 134 0 SHEET 2 AA9 2 ARG B 228 TRP B 230 1 O ARG B 228 N LEU B 133 SHEET 1 AB1 4 LYS B 162 PRO B 163 0 SHEET 2 AB1 4 THR B 154 LEU B 159 -1 N LEU B 159 O LYS B 162 SHEET 3 AB1 4 PHE B 206 SER B 211 -1 O SER B 207 N HIS B 158 SHEET 4 AB1 4 LEU B 220 ARG B 221 -1 O LEU B 220 N PHE B 210 SSBOND 1 CYS A 38 CYS A 99 1555 1555 2.08 SSBOND 2 CYS A 144 CYS A 208 1555 1555 2.04 SSBOND 3 CYS B 38 CYS B 99 1555 1555 2.07 SSBOND 4 CYS B 144 CYS B 208 1555 1555 2.03 CISPEP 1 PRO A 45 PRO A 46 0 2.75 CISPEP 2 TYR A 150 PRO A 151 0 -13.66 CISPEP 3 PRO B 45 PRO B 46 0 3.25 CISPEP 4 TYR B 150 PRO B 151 0 -13.58 SITE 1 AC1 8 GLY A 20 ALA A 21 ALA A 23 ALA A 60 SITE 2 AC1 8 ILE A 96 ARG A 98 ASN A 112 HOH A 471 SITE 1 AC2 6 GLN A 24 LYS A 39 SER A 111 ASN A 112 SITE 2 AC2 6 TYR A 113 LYS B 174 SITE 1 AC3 4 LYS A 52 TRP A 61 VAL A 63 ARG A 98 SITE 1 AC4 6 ASP A 73 VAL A 75 ALA A 76 ARG A 77 SITE 2 AC4 6 PHE A 85 PRO A 87 SITE 1 AC5 5 ILE A 120 PRO A 212 ARG A 218 LEU A 220 SITE 2 AC5 5 HOH A 450 SITE 1 AC6 2 VAL A 78 PRO B 87 SITE 1 AC7 3 ARG A 48 LEU A 49 GLN A 100 SITE 1 AC8 8 GLY B 20 ALA B 21 ALA B 23 ALA B 60 SITE 2 AC8 8 ILE B 96 ARG B 98 ASN B 112 HOH B 472 SITE 1 AC9 6 LYS A 174 GLN B 24 LYS B 39 SER B 111 SITE 2 AC9 6 ASN B 112 TYR B 113 SITE 1 AD1 5 LYS B 52 TRP B 61 VAL B 63 ARG B 98 SITE 2 AD1 5 HOH B 472 SITE 1 AD2 5 LEU B 133 VAL B 194 PRO B 196 PRO B 204 SITE 2 AD2 5 PHE B 206 SITE 1 AD3 4 THR A 58 GLU A 59 ARG B 178 ARG B 179 SITE 1 AD4 4 ARG A 179 THR B 58 GLU B 59 HOH B 484 SITE 1 AD5 13 ILE A 91 GLN A 92 ARG A 179 HIS A 180 SITE 2 AD5 13 PRO A 181 GLU A 182 THR A 183 GLY A 184 SITE 3 AD5 13 HOH A 443 GLY B 56 ARG B 57 THR B 58 SITE 4 AD5 13 GLN B 92 SITE 1 AD6 3 PRO A 87 VAL B 78 HOH B 438 SITE 1 AD7 13 GLY A 56 ARG A 57 THR A 58 GLN A 92 SITE 2 AD7 13 ILE B 91 GLN B 92 ARG B 179 HIS B 180 SITE 3 AD7 13 PRO B 181 GLU B 182 THR B 183 GLY B 184 SITE 4 AD7 13 HOH B 452 SITE 1 AD8 9 ALA B 21 MET B 22 ARG B 98 CYS B 99 SITE 2 AD8 9 LYS B 110 SER B 111 ASN B 112 HOH B 419 SITE 3 AD8 9 HOH B 447 SITE 1 AD9 4 ARG B 48 LEU B 49 GLN B 100 MET B 102 CRYST1 102.905 102.905 101.769 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009718 0.005611 0.000000 0.00000 SCALE2 0.000000 0.011221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009826 0.00000 MTRIX1 1 0.499882 -0.866093 -0.000514 -0.02512 1 MTRIX2 1 -0.866092 -0.499881 -0.001731 -0.03403 1 MTRIX3 1 0.001243 0.001310 -0.999998 -27.74992 1