HEADER HYDROLASE 09-JUL-20 6XQF TITLE CRYSTAL STRUCTURE OF SCLAM E144S MUTANT, A NON-SPECIFIC ENDO-BETA-1, TITLE 2 3(4)-GLUCANASE FROM FAMILY GH16, CO-CRYSTALLIZED WITH 1,3-BETA-D- TITLE 3 CELLOTRIOSYL-GLUCOSE, PRESENTING A 1,3-BETA-D-CELLOBIOSYL-GLUCOSE AT TITLE 4 ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH16 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.39; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 GENE: SCLAM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, TRANSGLYCOSYLATION, ENDO-1, 3(4)-BETA- KEYWDS 2 GLUCANASES, METAGENOME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.V.LIBERATO,F.SQUINA REVDAT 3 18-OCT-23 6XQF 1 REMARK REVDAT 2 25-AUG-21 6XQF 1 JRNL REVDAT 1 10-FEB-21 6XQF 0 JRNL AUTH M.V.LIBERATO,E.TEIXEIRA PRATES,T.A.GONCALVES,A.BERNARDES, JRNL AUTH 2 N.VILELA,J.FATTORI,G.C.EMATSU,M.CHINAGLIA,E.R.MACHI GOMES, JRNL AUTH 3 A.C.MIGLIORINI FIGUEIRA,A.DAMASIO,I.POLIKARPOV,M.S.SKAF, JRNL AUTH 4 F.M.SQUINA JRNL TITL INSIGHTS INTO THE DUAL CLEAVAGE ACTIVITY OF THE GH16 JRNL TITL 2 LAMINARINASE ENZYME CLASS ON BETA-1,3 AND BETA-1,4 JRNL TITL 3 GLYCOSIDIC BONDS. JRNL REF J.BIOL.CHEM. V. 296 00385 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33556371 JRNL DOI 10.1016/J.JBC.2021.100385 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 28544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1858 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2023 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.956 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2142 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1827 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2921 ; 1.941 ; 1.665 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4246 ; 1.554 ; 1.598 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 8.093 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;34.913 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;11.910 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.066 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2421 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 471 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 265 REMARK 3 RESIDUE RANGE : A 301 A 304 REMARK 3 RESIDUE RANGE : A 401 A 855 REMARK 3 ORIGIN FOR THE GROUP (A): -8.460 -4.624 12.934 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0286 REMARK 3 T33: 0.0032 T12: -0.0078 REMARK 3 T13: -0.0018 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.0062 L22: 1.0288 REMARK 3 L33: 0.7650 L12: -0.1681 REMARK 3 L13: 0.2056 L23: -0.3185 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.0323 S13: -0.0262 REMARK 3 S21: 0.0406 S22: 0.0046 S23: 0.0073 REMARK 3 S31: 0.0020 S32: -0.0317 S33: -0.0121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6XQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4583 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 45.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6XOF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG4000, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, AND 0.1 M TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.34600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.23700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.93400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.23700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.34600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.93400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 ARG A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CD CE NZ REMARK 470 LYS A 122 CE NZ REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 ARG A 178 CD NE CZ NH1 NH2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 LYS A 217 CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 674 O HOH A 754 1.72 REMARK 500 O HOH A 704 O HOH A 733 1.88 REMARK 500 O HOH A 776 O HOH A 790 1.94 REMARK 500 O HIS A 172 O HOH A 401 1.97 REMARK 500 O HOH A 456 O HOH A 704 2.00 REMARK 500 ND2 ASN A 54 O HOH A 402 2.02 REMARK 500 O HOH A 434 O HOH A 578 2.07 REMARK 500 O HOH A 442 O HOH A 723 2.09 REMARK 500 NZ LYS A 165 O HOH A 403 2.11 REMARK 500 O HOH A 497 O HOH A 730 2.14 REMARK 500 O HOH A 434 O HOH A 706 2.15 REMARK 500 O HOH A 546 O HOH A 811 2.15 REMARK 500 O HOH A 659 O HOH A 680 2.15 REMARK 500 OD1 ASP A 247 O HOH A 404 2.16 REMARK 500 O HOH A 725 O HOH A 809 2.16 REMARK 500 O HOH A 730 O HOH A 808 2.17 REMARK 500 O HOH A 829 O HOH A 848 2.17 REMARK 500 O HOH A 717 O HOH A 815 2.18 REMARK 500 O HOH A 647 O HOH A 725 2.18 REMARK 500 ND1 HIS A 172 O HOH A 405 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 70 CD GLU A 70 OE2 -0.099 REMARK 500 GLU A 81 CD GLU A 81 OE1 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 76.64 -163.14 REMARK 500 TYR A 109 155.85 68.62 REMARK 500 ASP A 183 56.93 37.47 REMARK 500 PHE A 225 40.25 -99.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 849 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 850 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 851 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 853 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 854 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 855 DISTANCE = 6.76 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 28 O REMARK 620 2 GLY A 72 O 93.0 REMARK 620 3 ASP A 258 O 75.1 88.0 REMARK 620 4 ASP A 258 OD1 148.8 95.0 75.1 REMARK 620 5 HOH A 496 O 90.0 176.0 90.2 81.1 REMARK 620 6 HOH A 519 O 70.2 94.6 145.2 138.8 88.8 REMARK 620 7 HOH A 554 O 144.0 86.5 140.7 66.7 92.6 74.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6XOF RELATED DB: PDB DBREF1 6XQF A 2 266 UNP A0A0B5H9B3_9BACT DBREF2 6XQF A A0A0B5H9B3 1 265 SEQADV 6XQF GLY A -2 UNP A0A0B5H9B EXPRESSION TAG SEQADV 6XQF SER A -1 UNP A0A0B5H9B EXPRESSION TAG SEQADV 6XQF HIS A 0 UNP A0A0B5H9B EXPRESSION TAG SEQADV 6XQF MET A 1 UNP A0A0B5H9B EXPRESSION TAG SEQADV 6XQF SER A 144 UNP A0A0B5H9B GLU 143 ENGINEERED MUTATION SEQRES 1 A 269 GLY SER HIS MET GLN GLN PRO GLU GLY VAL THR ALA PRO SEQRES 2 A 269 GLY ASN GLU PRO MET ALA ILE PRO SER ASP TYR LYS LEU SEQRES 3 A 269 VAL TRP ALA ASP GLU PHE ASN THR PRO GLY ALA PRO ASP SEQRES 4 A 269 ALA LYS LYS TRP ARG TYR ASP THR SER ARG ASN LYS GLU SEQRES 5 A 269 GLY TRP TYR ASN ASN GLU LEU GLN TYR TYR ALA ALA GLY SEQRES 6 A 269 ARG PRO GLU ASN VAL ARG VAL GLU ASN GLY ASN LEU VAL SEQRES 7 A 269 ILE GLU THR ARG LYS GLU ARG LEU THR SER MET ALA ASP SEQRES 8 A 269 TYR GLY GLY GLN GLU TYR SER SER GLY LYS LEU PHE THR SEQRES 9 A 269 GLN GLY LEU ALA ASP TRP GLN TYR GLY TYR VAL GLU VAL SEQRES 10 A 269 ARG ALA LYS LEU ALA CYS GLY LYS GLY MET TRP PRO ALA SEQRES 11 A 269 ILE TRP MET MET ALA SER ASP GLY SER THR GLY TRP PRO SEQRES 12 A 269 ALA LEU GLY SER ILE ASP ILE MET GLU MET VAL ALA TRP SEQRES 13 A 269 ASP PRO THR THR ILE HIS GLY THR ILE HIS THR LYS ALA SEQRES 14 A 269 TYR ASN HIS VAL ILE HIS THR GLN LYS GLY SER ARG THR SEQRES 15 A 269 THR ALA ALA ASP PRO CYS GLY GLN PHE HIS THR TYR SER SEQRES 16 A 269 LEU ASP TRP THR LYS ASP ARG MET LEU ILE GLY VAL ASP SEQRES 17 A 269 GLY HIS ALA TYR MET ARG PHE ASP ASN ASP HIS LYS GLY SEQRES 18 A 269 ASN HIS ASP THR TRP PRO PHE ASP SER PRO GLN TYR LEU SEQRES 19 A 269 ILE LEU ASN VAL ALA ILE GLY GLY TRP GLY GLY GLN GLN SEQRES 20 A 269 GLY VAL ASP ALA ALA ALA PHE PRO SER LYS MET GLU VAL SEQRES 21 A 269 ASP TYR VAL ARG VAL TYR GLN LYS ARG HET GLC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET CA A 301 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC C6 H12 O6 FORMUL 2 BGC 2(C6 H12 O6) FORMUL 3 CA CA 2+ FORMUL 4 HOH *455(H2 O) HELIX 1 AA1 GLY A 239 GLN A 243 5 5 HELIX 2 AA2 ASP A 247 PHE A 251 5 5 SHEET 1 AA1 9 PRO A 10 PRO A 14 0 SHEET 2 AA1 9 HIS A 207 ASP A 213 -1 O ALA A 208 N GLU A 13 SHEET 3 AA1 9 ARG A 199 VAL A 204 -1 N MET A 200 O PHE A 212 SHEET 4 AA1 9 HIS A 189 TRP A 195 -1 N ASP A 194 O LEU A 201 SHEET 5 AA1 9 GLY A 110 LYS A 117 -1 N VAL A 114 O TYR A 191 SHEET 6 AA1 9 SER A 253 GLN A 264 -1 O ARG A 261 N GLU A 113 SHEET 7 AA1 9 ASN A 73 LYS A 80 -1 N THR A 78 O SER A 253 SHEET 8 AA1 9 TYR A 94 SER A 96 -1 O SER A 95 N ARG A 79 SHEET 9 AA1 9 GLN A 57 TYR A 59 1 N TYR A 58 O TYR A 94 SHEET 1 AA2 4 LYS A 22 ASP A 27 0 SHEET 2 AA2 4 SER A 253 GLN A 264 -1 O VAL A 262 N TRP A 25 SHEET 3 AA2 4 ASN A 73 LYS A 80 -1 N THR A 78 O SER A 253 SHEET 4 AA2 4 VAL A 67 GLU A 70 -1 N ARG A 68 O VAL A 75 SHEET 1 AA3 7 ARG A 41 TYR A 42 0 SHEET 2 AA3 7 LYS A 98 PHE A 100 -1 O PHE A 100 N ARG A 41 SHEET 3 AA3 7 GLN A 229 ILE A 237 -1 O LEU A 233 N LEU A 99 SHEET 4 AA3 7 MET A 124 ALA A 132 -1 N TRP A 129 O ILE A 232 SHEET 5 AA3 7 SER A 144 GLU A 149 -1 O MET A 148 N ILE A 128 SHEET 6 AA3 7 THR A 157 HIS A 163 -1 O THR A 161 N ASP A 146 SHEET 7 AA3 7 LYS A 175 THR A 180 -1 O THR A 179 N ILE A 158 SSBOND 1 CYS A 120 CYS A 185 1555 1555 2.07 LINK O3 GLC B 1 C1 BGC B 2 1555 1555 1.37 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.34 LINK O GLU A 28 CA CA A 301 1555 1555 2.31 LINK O GLY A 72 CA CA A 301 1555 1555 2.29 LINK O ASP A 258 CA CA A 301 1555 1555 2.39 LINK OD1 ASP A 258 CA CA A 301 1555 1555 2.40 LINK CA CA A 301 O HOH A 496 1555 1555 2.42 LINK CA CA A 301 O HOH A 519 1555 1555 2.48 LINK CA CA A 301 O HOH A 554 1555 1555 2.58 CISPEP 1 TRP A 139 PRO A 140 0 2.05 CISPEP 2 PHE A 251 PRO A 252 0 -4.70 CRYST1 38.692 49.868 114.474 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008736 0.00000