HEADER VIRAL PROTEIN 09-JUL-20 6XQI TITLE STRUCTURE OF HIV-1 VPR IN COMPLEX WITH THE HUMAN NUCLEOTIDE EXCISION TITLE 2 REPAIR PROTEIN HHR23A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN VPR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: R ORF PROTEIN,VIRAL PROTEIN R; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 8 CHAIN: F, G; COMPND 9 SYNONYM: HHR23A; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ASN-PRO-LEU-GLU-PHE-LEU; COMPND 13 CHAIN: H, I; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE NY5); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11698; SOURCE 6 STRAIN: ISOLATE NY5; SOURCE 7 GENE: VPR; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RAD23A; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV, VIRAL ACCESSORY PROTEIN, HHR23A, HUMAN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CALERO,Y.WU,S.C.WEISS REVDAT 3 22-MAY-24 6XQI 1 REMARK REVDAT 2 08-DEC-21 6XQI 1 JRNL REVDAT 1 11-AUG-21 6XQI 0 JRNL AUTH I.L.BYEON,G.CALERO,Y.WU,C.H.BYEON,J.JUNG,M.DELUCIA,X.ZHOU, JRNL AUTH 2 S.WEISS,J.AHN,C.HAO,J.SKOWRONSKI,A.M.GRONENBORN JRNL TITL STRUCTURE OF HIV-1 VPR IN COMPLEX WITH THE HUMAN NUCLEOTIDE JRNL TITL 2 EXCISION REPAIR PROTEIN HHR23A. JRNL REF NAT COMMUN V. 12 6864 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34824204 JRNL DOI 10.1038/S41467-021-27009-W REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.1_3469 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 31170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.990 REMARK 3 FREE R VALUE TEST SET COUNT : 933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7830 - 4.4690 0.88 4262 135 0.1992 0.2266 REMARK 3 2 4.4690 - 3.5505 0.91 4257 156 0.1759 0.1792 REMARK 3 3 3.5505 - 3.1027 0.92 4315 132 0.1829 0.2089 REMARK 3 4 3.1027 - 2.8194 0.93 4326 133 0.2050 0.2493 REMARK 3 5 2.8194 - 2.6176 0.94 4359 141 0.2435 0.2571 REMARK 3 6 2.6176 - 2.4634 0.94 4394 114 0.2833 0.2610 REMARK 3 7 2.4634 - 2.3401 0.93 4324 122 0.3081 0.3751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 64.9542 -17.6203 6.7735 REMARK 3 T TENSOR REMARK 3 T11: 0.5840 T22: 0.3365 REMARK 3 T33: 0.4407 T12: -0.0026 REMARK 3 T13: 0.1343 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.0041 L22: 1.7096 REMARK 3 L33: 2.3974 L12: -0.0668 REMARK 3 L13: 0.9871 L23: -0.1306 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.0240 S13: 0.0759 REMARK 3 S21: -0.0148 S22: 0.1776 S23: 0.0147 REMARK 3 S31: -0.1933 S32: -0.0106 S33: -0.1609 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1222 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN C AND (RESID 17 THROUGH 78 OR REMARK 3 RESID 79)) REMARK 3 ATOM PAIRS NUMBER : 1222 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN D AND (RESID 17 THROUGH 78 OR REMARK 3 RESID 79)) REMARK 3 ATOM PAIRS NUMBER : 1222 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN F AND (RESID 166 THROUGH 167 OR REMARK 3 (RESID 168 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 169 REMARK 3 THROUGH 192 OR RESID 194 THROUGH 205)) REMARK 3 SELECTION : (CHAIN G AND (RESID 166 THROUGH 192 OR REMARK 3 RESID 194 THROUGH 205)) REMARK 3 ATOM PAIRS NUMBER : 364 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN H REMARK 3 SELECTION : CHAIN I REMARK 3 ATOM PAIRS NUMBER : 52 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(111) AND SI(220) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 24.783 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 4.508 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.84 REMARK 200 R MERGE FOR SHELL (I) : 9.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 7.5, 10% PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.10167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.20333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.20333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.10167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH G 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 15 REMARK 465 ASN A 16 REMARK 465 ALA B 15 REMARK 465 ASN B 16 REMARK 465 ALA C 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 16 CG OD1 ND2 REMARK 470 LYS F 193 CB CG CD CE NZ REMARK 470 LYS G 168 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 32 O HOH B 201 2.05 REMARK 500 O GLU A 17 O HOH A 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN D 16 -175.47 -170.98 REMARK 500 GLU D 17 -49.53 -144.76 REMARK 500 GLU F 192 -134.08 57.28 REMARK 500 CYS G 191 30.92 -84.23 REMARK 500 GLU G 192 -107.78 61.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS F 193 ASN F 194 -148.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 ND1 REMARK 620 2 HIS A 71 NE2 108.3 REMARK 620 3 CYS A 76 SG 105.0 115.2 REMARK 620 4 HIS A 78 ND1 110.1 124.0 92.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 33 ND1 REMARK 620 2 HIS B 71 NE2 107.6 REMARK 620 3 CYS B 76 SG 106.7 119.6 REMARK 620 4 HIS B 78 ND1 109.0 107.6 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 33 ND1 REMARK 620 2 HIS C 71 NE2 106.8 REMARK 620 3 CYS C 76 SG 106.6 117.2 REMARK 620 4 HIS C 78 ND1 101.7 114.2 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 33 ND1 REMARK 620 2 HIS D 71 NE2 112.2 REMARK 620 3 CYS D 76 SG 104.3 113.8 REMARK 620 4 HIS D 78 ND1 113.1 111.9 100.9 REMARK 620 N 1 2 3 DBREF 6XQI A 16 78 UNP P12520 VPR_HV1N5 16 78 DBREF 6XQI B 16 78 UNP P12520 VPR_HV1N5 16 78 DBREF 6XQI C 16 78 UNP P12520 VPR_HV1N5 16 78 DBREF 6XQI D 16 78 UNP P12520 VPR_HV1N5 16 78 DBREF 6XQI F 166 205 UNP P54725 RD23A_HUMAN 319 358 DBREF 6XQI G 166 205 UNP P54725 RD23A_HUMAN 319 358 DBREF 6XQI H 74 79 PDB 6XQI 6XQI 74 79 DBREF 6XQI I 74 79 PDB 6XQI 6XQI 74 79 SEQADV 6XQI ALA A 15 UNP P12520 EXPRESSION TAG SEQADV 6XQI SER A 77 UNP P12520 ARG 77 CONFLICT SEQADV 6XQI ALA B 15 UNP P12520 EXPRESSION TAG SEQADV 6XQI SER B 77 UNP P12520 ARG 77 CONFLICT SEQADV 6XQI ALA C 15 UNP P12520 EXPRESSION TAG SEQADV 6XQI SER C 77 UNP P12520 ARG 77 CONFLICT SEQADV 6XQI ALA D 15 UNP P12520 EXPRESSION TAG SEQADV 6XQI SER D 77 UNP P12520 ARG 77 CONFLICT SEQRES 1 A 64 ALA ASN GLU TRP THR LEU GLU LEU LEU GLU GLU LEU LYS SEQRES 2 A 64 SER GLU ALA VAL ARG HIS PHE PRO ARG ILE TRP LEU HIS SEQRES 3 A 64 ASN LEU GLY GLN HIS ILE TYR GLU THR TYR GLY ASP THR SEQRES 4 A 64 TRP ALA GLY VAL GLU ALA ILE ILE ARG ILE LEU GLN GLN SEQRES 5 A 64 LEU LEU PHE ILE HIS PHE ARG ILE GLY CYS SER HIS SEQRES 1 B 64 ALA ASN GLU TRP THR LEU GLU LEU LEU GLU GLU LEU LYS SEQRES 2 B 64 SER GLU ALA VAL ARG HIS PHE PRO ARG ILE TRP LEU HIS SEQRES 3 B 64 ASN LEU GLY GLN HIS ILE TYR GLU THR TYR GLY ASP THR SEQRES 4 B 64 TRP ALA GLY VAL GLU ALA ILE ILE ARG ILE LEU GLN GLN SEQRES 5 B 64 LEU LEU PHE ILE HIS PHE ARG ILE GLY CYS SER HIS SEQRES 1 C 64 ALA ASN GLU TRP THR LEU GLU LEU LEU GLU GLU LEU LYS SEQRES 2 C 64 SER GLU ALA VAL ARG HIS PHE PRO ARG ILE TRP LEU HIS SEQRES 3 C 64 ASN LEU GLY GLN HIS ILE TYR GLU THR TYR GLY ASP THR SEQRES 4 C 64 TRP ALA GLY VAL GLU ALA ILE ILE ARG ILE LEU GLN GLN SEQRES 5 C 64 LEU LEU PHE ILE HIS PHE ARG ILE GLY CYS SER HIS SEQRES 1 D 64 ALA ASN GLU TRP THR LEU GLU LEU LEU GLU GLU LEU LYS SEQRES 2 D 64 SER GLU ALA VAL ARG HIS PHE PRO ARG ILE TRP LEU HIS SEQRES 3 D 64 ASN LEU GLY GLN HIS ILE TYR GLU THR TYR GLY ASP THR SEQRES 4 D 64 TRP ALA GLY VAL GLU ALA ILE ILE ARG ILE LEU GLN GLN SEQRES 5 D 64 LEU LEU PHE ILE HIS PHE ARG ILE GLY CYS SER HIS SEQRES 1 F 40 GLN GLU LYS GLU ALA ILE GLU ARG LEU LYS ALA LEU GLY SEQRES 2 F 40 PHE PRO GLU SER LEU VAL ILE GLN ALA TYR PHE ALA CYS SEQRES 3 F 40 GLU LYS ASN GLU ASN LEU ALA ALA ASN PHE LEU LEU SER SEQRES 4 F 40 GLN SEQRES 1 G 40 GLN GLU LYS GLU ALA ILE GLU ARG LEU LYS ALA LEU GLY SEQRES 2 G 40 PHE PRO GLU SER LEU VAL ILE GLN ALA TYR PHE ALA CYS SEQRES 3 G 40 GLU LYS ASN GLU ASN LEU ALA ALA ASN PHE LEU LEU SER SEQRES 4 G 40 GLN SEQRES 1 H 6 ASN PRO LEU GLU PHE LEU SEQRES 1 I 6 ASN PRO LEU GLU PHE LEU HET ZN A 101 1 HET ZN B 101 1 HET ZN C 101 1 HET ZN D 101 1 HETNAM ZN ZINC ION FORMUL 9 ZN 4(ZN 2+) FORMUL 13 HOH *47(H2 O) HELIX 1 AA1 GLU A 17 PHE A 34 1 18 HELIX 2 AA2 PRO A 35 GLY A 51 1 17 HELIX 3 AA3 THR A 53 GLY A 75 1 23 HELIX 4 AA4 TRP B 18 VAL B 31 1 14 HELIX 5 AA5 PRO B 35 GLY B 51 1 17 HELIX 6 AA6 THR B 53 GLY B 75 1 23 HELIX 7 AA7 GLU C 17 VAL C 31 1 15 HELIX 8 AA8 PRO C 35 GLY C 51 1 17 HELIX 9 AA9 THR C 53 GLY C 75 1 23 HELIX 10 AB1 GLU D 17 PHE D 34 1 18 HELIX 11 AB2 PRO D 35 GLY D 51 1 17 HELIX 12 AB3 THR D 53 GLY D 75 1 23 HELIX 13 AB4 GLU F 167 LEU F 177 1 11 HELIX 14 AB5 PRO F 180 CYS F 191 1 12 HELIX 15 AB6 ASN F 194 SER F 204 1 11 HELIX 16 AB7 GLU G 167 LEU G 177 1 11 HELIX 17 AB8 PRO G 180 CYS G 191 1 12 HELIX 18 AB9 ASN G 194 SER G 204 1 11 LINK ND1 HIS A 33 ZN ZN A 101 1555 1555 2.04 LINK NE2 HIS A 71 ZN ZN A 101 1555 1555 2.12 LINK SG CYS A 76 ZN ZN A 101 1555 1555 2.28 LINK ND1 HIS A 78 ZN ZN A 101 1555 1555 1.93 LINK ND1 HIS B 33 ZN ZN B 101 1555 1555 2.08 LINK NE2 HIS B 71 ZN ZN B 101 1555 1555 2.12 LINK SG CYS B 76 ZN ZN B 101 1555 1555 2.22 LINK ND1 HIS B 78 ZN ZN B 101 1555 1555 2.20 LINK ND1 HIS C 33 ZN ZN C 101 1555 1555 2.08 LINK NE2 HIS C 71 ZN ZN C 101 1555 1555 2.06 LINK SG CYS C 76 ZN ZN C 101 1555 1555 2.25 LINK ND1 HIS C 78 ZN ZN C 101 1555 1555 2.03 LINK ND1 HIS D 33 ZN ZN D 101 1555 1555 2.07 LINK NE2 HIS D 71 ZN ZN D 101 1555 1555 2.08 LINK SG CYS D 76 ZN ZN D 101 1555 1555 2.33 LINK ND1 HIS D 78 ZN ZN D 101 1555 1555 1.95 CRYST1 130.165 130.165 81.305 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007683 0.004436 0.000000 0.00000 SCALE2 0.000000 0.008871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012299 0.00000