HEADER SIGNALING PROTEIN 09-JUL-20 6XQK TITLE CRYSTAL STRUCTURE OF THE D/D DOMAIN OF PKA FROM S. CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: D/D DOMAIN (UNP RESIDUES 1-50); COMPND 5 SYNONYM: CAPK REGULATORY SUBUNIT,BYPASS OF CYCLASE MUTATIONS PROTEIN COMPND 6 1,PROTEIN KINASE A REGULATORY SUBUNIT,PKA REGULATORY SUBUNIT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: BCY1, REG1, SRA1, YIL033C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN KINASE A, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.LARRIEUX,N.GONZALEZ BARDECI,F.TRAJTENBERG,A.BUSCHIAZZO REVDAT 4 06-MAR-24 6XQK 1 REMARK REVDAT 3 19-MAY-21 6XQK 1 JRNL REVDAT 2 21-APR-21 6XQK 1 JRNL REVDAT 1 14-APR-21 6XQK 0 JRNL AUTH N.G.BARDECI,E.TOFOLON,F.TRAJTENBERG,J.CARAMELO,N.LARRIEUX, JRNL AUTH 2 S.ROSSI,A.BUSCHIAZZO,S.MORENO JRNL TITL THE CRYSTAL STRUCTURE OF YEAST REGULATORY SUBUNIT REVEALS JRNL TITL 2 KEY EVOLUTIONARY INSIGHTS INTO PROTEIN KINASE A JRNL TITL 3 OLIGOMERIZATION. JRNL REF J.STRUCT.BIOL. V. 213 07732 2021 JRNL REFN ESSN 1095-8657 JRNL PMID 33819633 JRNL DOI 10.1016/J.JSB.2021.107732 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (20-MAY-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 601 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 31 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.84 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 414 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2197 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 397 REMARK 3 BIN R VALUE (WORKING SET) : 0.2183 REMARK 3 BIN FREE R VALUE : 0.2569 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.11 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 17 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2891 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.90420 REMARK 3 B22 (A**2) : 5.07100 REMARK 3 B33 (A**2) : 0.83330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.78390 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 2.386 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.336 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.898 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.341 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.890 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.818 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2973 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3991 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1058 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 536 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2973 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 364 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2602 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.85 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.70 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.41 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 23.5161 18.2929 19.3827 REMARK 3 T TENSOR REMARK 3 T11: -0.0596 T22: -0.0582 REMARK 3 T33: 0.0318 T12: -0.0116 REMARK 3 T13: 0.0121 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: -0.4325 L22: 1.6098 REMARK 3 L33: 0.6192 L12: -0.9142 REMARK 3 L13: 0.6615 L23: -0.1690 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.0148 S13: 0.0447 REMARK 3 S21: -0.0667 S22: 0.1292 S23: -0.2043 REMARK 3 S31: 0.0817 S32: 0.1188 S33: -0.0912 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 24.7578 30.4455 17.0041 REMARK 3 T TENSOR REMARK 3 T11: 0.0296 T22: -0.0566 REMARK 3 T33: -0.0344 T12: -0.0646 REMARK 3 T13: 0.0265 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 0.6352 L22: 1.9887 REMARK 3 L33: -0.6352 L12: -0.0387 REMARK 3 L13: -0.7731 L23: -0.1142 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: -0.0700 S13: -0.1137 REMARK 3 S21: -0.1976 S22: 0.1716 S23: -0.1921 REMARK 3 S31: -0.2139 S32: 0.0192 S33: -0.0912 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 3.5492 26.4297 15.7117 REMARK 3 T TENSOR REMARK 3 T11: -0.0657 T22: 0.0038 REMARK 3 T33: -0.0302 T12: 0.0871 REMARK 3 T13: 0.0131 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.3900 L22: 0.5390 REMARK 3 L33: 5.6636 L12: 0.8112 REMARK 3 L13: -1.5586 L23: 1.1205 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.1713 S13: -0.0975 REMARK 3 S21: 0.1791 S22: 0.1730 S23: 0.2834 REMARK 3 S31: -0.5151 S32: -0.5981 S33: -0.1806 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.7085 21.9818 5.0792 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: -0.0336 REMARK 3 T33: -0.0732 T12: -0.0339 REMARK 3 T13: -0.0653 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: -0.0293 L22: 0.1756 REMARK 3 L33: 5.7603 L12: -0.0711 REMARK 3 L13: -0.7344 L23: 0.7982 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 0.2815 S13: -0.3146 REMARK 3 S21: -0.7575 S22: -0.0053 S23: -0.0451 REMARK 3 S31: 0.3390 S32: -0.5092 S33: 0.0208 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.4802 44.1573 15.7244 REMARK 3 T TENSOR REMARK 3 T11: 0.0186 T22: -0.1009 REMARK 3 T33: -0.0426 T12: -0.0431 REMARK 3 T13: 0.0367 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 0.7519 L22: 3.1280 REMARK 3 L33: 0.3148 L12: 0.8915 REMARK 3 L13: -0.1819 L23: -2.0419 REMARK 3 S TENSOR REMARK 3 S11: -0.1780 S12: 0.0160 S13: -0.2658 REMARK 3 S21: -0.2468 S22: -0.0378 S23: 0.0831 REMARK 3 S31: 0.3553 S32: -0.2283 S33: 0.2158 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { F|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.1676 55.7964 18.2469 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: -0.0913 REMARK 3 T33: -0.0253 T12: -0.0391 REMARK 3 T13: -0.0285 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.7177 L22: 0.3829 REMARK 3 L33: -0.1547 L12: -0.8913 REMARK 3 L13: -0.1851 L23: -1.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: 0.0955 S13: 0.1462 REMARK 3 S21: 0.0833 S22: -0.0131 S23: 0.0120 REMARK 3 S31: -0.1118 S32: -0.0920 S33: 0.0901 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { G|* } REMARK 3 ORIGIN FOR THE GROUP (A): 39.4738 48.3875 26.2506 REMARK 3 T TENSOR REMARK 3 T11: -0.0013 T22: 0.0064 REMARK 3 T33: -0.0221 T12: 0.1282 REMARK 3 T13: -0.0310 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.4815 L22: 0.0000 REMARK 3 L33: 2.9223 L12: 0.5548 REMARK 3 L13: -0.5871 L23: -0.1656 REMARK 3 S TENSOR REMARK 3 S11: -0.1147 S12: -0.3597 S13: -0.1029 REMARK 3 S21: 0.3447 S22: 0.1066 S23: -0.2188 REMARK 3 S31: 0.5738 S32: 0.6090 S33: 0.0081 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): 41.8163 51.6943 14.7281 REMARK 3 T TENSOR REMARK 3 T11: -0.0495 T22: -0.0084 REMARK 3 T33: 0.0207 T12: -0.0182 REMARK 3 T13: 0.1082 T23: 0.1023 REMARK 3 L TENSOR REMARK 3 L11: 2.8229 L22: 0.0000 REMARK 3 L33: 4.0566 L12: -1.2753 REMARK 3 L13: -0.5742 L23: 1.7085 REMARK 3 S TENSOR REMARK 3 S11: -0.2309 S12: -0.0423 S13: 0.3825 REMARK 3 S21: -0.5288 S22: -0.0136 S23: -0.2752 REMARK 3 S31: -0.1555 S32: 0.7695 S33: 0.2445 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX-HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.557 REMARK 200 RESOLUTION RANGE LOW (A) : 64.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% W/V PEG4000, 0.1 M TRIS, PH 8.5, REMARK 280 0.2 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.06700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 49 REMARK 465 ARG B 50 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 LEU C 5 REMARK 465 PRO C 6 REMARK 465 LYS C 7 REMARK 465 ALA C 49 REMARK 465 ARG C 50 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 SER D 3 REMARK 465 SER D 4 REMARK 465 LEU D 5 REMARK 465 ARG D 50 REMARK 465 ALA E 0 REMARK 465 MET E 1 REMARK 465 VAL E 2 REMARK 465 SER E 3 REMARK 465 ALA E 49 REMARK 465 ARG E 50 REMARK 465 ALA F 0 REMARK 465 MET F 1 REMARK 465 VAL F 2 REMARK 465 SER F 3 REMARK 465 ARG F 50 REMARK 465 ALA G 0 REMARK 465 MET G 1 REMARK 465 VAL G 2 REMARK 465 SER G 3 REMARK 465 SER G 4 REMARK 465 ARG G 50 REMARK 465 ALA H 0 REMARK 465 MET H 1 REMARK 465 VAL H 2 REMARK 465 SER H 3 REMARK 465 SER H 4 REMARK 465 ALA H 49 REMARK 465 ARG H 50 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 4 OG REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 GLN C 10 CG CD OE1 NE2 REMARK 470 GLN C 14 CG CD OE1 NE2 REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 GLN D 10 CG CD OE1 NE2 REMARK 470 LEU E 5 CG CD1 CD2 REMARK 470 LYS E 7 CG CD CE NZ REMARK 470 LEU E 47 CG CD1 CD2 REMARK 470 LEU G 5 CG CD1 CD2 REMARK 470 LYS G 7 CG CD CE NZ REMARK 470 GLU G 8 CG CD OE1 OE2 REMARK 470 LYS H 7 CG CD CE NZ REMARK 470 GLU H 8 CG CD OE1 OE2 REMARK 470 GLN H 14 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 5 151.70 -39.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL E 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL F 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL G 100 DBREF 6XQK A 1 50 UNP P07278 KAPR_YEAST 1 50 DBREF 6XQK B 1 50 UNP P07278 KAPR_YEAST 1 50 DBREF 6XQK C 1 50 UNP P07278 KAPR_YEAST 1 50 DBREF 6XQK D 1 50 UNP P07278 KAPR_YEAST 1 50 DBREF 6XQK E 1 50 UNP P07278 KAPR_YEAST 1 50 DBREF 6XQK F 1 50 UNP P07278 KAPR_YEAST 1 50 DBREF 6XQK G 1 50 UNP P07278 KAPR_YEAST 1 50 DBREF 6XQK H 1 50 UNP P07278 KAPR_YEAST 1 50 SEQADV 6XQK ALA A 0 UNP P07278 CLONING ARTIFACT SEQADV 6XQK ALA B 0 UNP P07278 CLONING ARTIFACT SEQADV 6XQK ALA C 0 UNP P07278 CLONING ARTIFACT SEQADV 6XQK ALA D 0 UNP P07278 CLONING ARTIFACT SEQADV 6XQK ALA E 0 UNP P07278 CLONING ARTIFACT SEQADV 6XQK ALA F 0 UNP P07278 CLONING ARTIFACT SEQADV 6XQK ALA G 0 UNP P07278 CLONING ARTIFACT SEQADV 6XQK ALA H 0 UNP P07278 CLONING ARTIFACT SEQRES 1 A 51 ALA MET VAL SER SER LEU PRO LYS GLU SER GLN ALA GLU SEQRES 2 A 51 LEU GLN LEU PHE GLN ASN GLU ILE ASN ALA ALA ASN PRO SEQRES 3 A 51 SER ASP PHE LEU GLN PHE SER ALA ASN TYR PHE ASN LYS SEQRES 4 A 51 ARG LEU GLU GLN GLN ARG ALA PHE LEU LYS ALA ARG SEQRES 1 B 51 ALA MET VAL SER SER LEU PRO LYS GLU SER GLN ALA GLU SEQRES 2 B 51 LEU GLN LEU PHE GLN ASN GLU ILE ASN ALA ALA ASN PRO SEQRES 3 B 51 SER ASP PHE LEU GLN PHE SER ALA ASN TYR PHE ASN LYS SEQRES 4 B 51 ARG LEU GLU GLN GLN ARG ALA PHE LEU LYS ALA ARG SEQRES 1 C 51 ALA MET VAL SER SER LEU PRO LYS GLU SER GLN ALA GLU SEQRES 2 C 51 LEU GLN LEU PHE GLN ASN GLU ILE ASN ALA ALA ASN PRO SEQRES 3 C 51 SER ASP PHE LEU GLN PHE SER ALA ASN TYR PHE ASN LYS SEQRES 4 C 51 ARG LEU GLU GLN GLN ARG ALA PHE LEU LYS ALA ARG SEQRES 1 D 51 ALA MET VAL SER SER LEU PRO LYS GLU SER GLN ALA GLU SEQRES 2 D 51 LEU GLN LEU PHE GLN ASN GLU ILE ASN ALA ALA ASN PRO SEQRES 3 D 51 SER ASP PHE LEU GLN PHE SER ALA ASN TYR PHE ASN LYS SEQRES 4 D 51 ARG LEU GLU GLN GLN ARG ALA PHE LEU LYS ALA ARG SEQRES 1 E 51 ALA MET VAL SER SER LEU PRO LYS GLU SER GLN ALA GLU SEQRES 2 E 51 LEU GLN LEU PHE GLN ASN GLU ILE ASN ALA ALA ASN PRO SEQRES 3 E 51 SER ASP PHE LEU GLN PHE SER ALA ASN TYR PHE ASN LYS SEQRES 4 E 51 ARG LEU GLU GLN GLN ARG ALA PHE LEU LYS ALA ARG SEQRES 1 F 51 ALA MET VAL SER SER LEU PRO LYS GLU SER GLN ALA GLU SEQRES 2 F 51 LEU GLN LEU PHE GLN ASN GLU ILE ASN ALA ALA ASN PRO SEQRES 3 F 51 SER ASP PHE LEU GLN PHE SER ALA ASN TYR PHE ASN LYS SEQRES 4 F 51 ARG LEU GLU GLN GLN ARG ALA PHE LEU LYS ALA ARG SEQRES 1 G 51 ALA MET VAL SER SER LEU PRO LYS GLU SER GLN ALA GLU SEQRES 2 G 51 LEU GLN LEU PHE GLN ASN GLU ILE ASN ALA ALA ASN PRO SEQRES 3 G 51 SER ASP PHE LEU GLN PHE SER ALA ASN TYR PHE ASN LYS SEQRES 4 G 51 ARG LEU GLU GLN GLN ARG ALA PHE LEU LYS ALA ARG SEQRES 1 H 51 ALA MET VAL SER SER LEU PRO LYS GLU SER GLN ALA GLU SEQRES 2 H 51 LEU GLN LEU PHE GLN ASN GLU ILE ASN ALA ALA ASN PRO SEQRES 3 H 51 SER ASP PHE LEU GLN PHE SER ALA ASN TYR PHE ASN LYS SEQRES 4 H 51 ARG LEU GLU GLN GLN ARG ALA PHE LEU LYS ALA ARG HET GOL A 100 6 HET GOL D 100 6 HET CL E 100 1 HET GOL F 200 6 HET GOL G 100 6 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 GOL 4(C3 H8 O3) FORMUL 11 CL CL 1- FORMUL 14 HOH *118(H2 O) HELIX 1 AA1 PRO A 6 ASN A 24 1 19 HELIX 2 AA2 ASP A 27 ALA A 49 1 23 HELIX 3 AA3 LYS B 7 ASN B 24 1 18 HELIX 4 AA4 ASP B 27 LYS B 48 1 22 HELIX 5 AA5 SER C 9 ASN C 24 1 16 HELIX 6 AA6 ASP C 27 LYS C 48 1 22 HELIX 7 AA7 LYS D 7 ASN D 24 1 18 HELIX 8 AA8 ASP D 27 ALA D 49 1 23 HELIX 9 AA9 PRO E 6 ASN E 24 1 19 HELIX 10 AB1 ASP E 27 LYS E 48 1 22 HELIX 11 AB2 PRO F 6 ASN F 24 1 19 HELIX 12 AB3 ASP F 27 ALA F 49 1 23 HELIX 13 AB4 PRO G 6 ASN G 24 1 19 HELIX 14 AB5 ASP G 27 LYS G 48 1 22 HELIX 15 AB6 PRO H 6 ASN H 24 1 19 HELIX 16 AB7 ASP H 27 LYS H 48 1 22 SITE 1 AC1 6 ASN A 34 ASN A 37 LYS A 38 GLU A 41 SITE 2 AC1 6 ASN D 34 ASN D 37 SITE 1 AC2 5 GLU A 41 PRO D 25 SER D 26 ASP D 27 SITE 2 AC2 5 GLN D 30 SITE 1 AC3 3 ARG B 39 ARG E 39 GLN E 43 SITE 1 AC4 7 GLU E 8 HOH E 200 SER F 26 ASP F 27 SITE 2 AC4 7 PHE F 28 LEU F 29 LYS H 48 SITE 1 AC5 10 GLN E 30 LEU F 40 GLU F 41 ARG F 44 SITE 2 AC5 10 HOH F 303 LEU G 40 GLU G 41 ARG G 44 SITE 3 AC5 10 HOH G 204 GLN H 30 CRYST1 56.824 52.134 68.832 90.00 109.70 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017598 0.000000 0.006301 0.00000 SCALE2 0.000000 0.019181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015431 0.00000 CONECT 2906 2907 2908 CONECT 2907 2906 CONECT 2908 2906 2909 2910 CONECT 2909 2908 CONECT 2910 2908 2911 CONECT 2911 2910 CONECT 2912 2913 2914 CONECT 2913 2912 CONECT 2914 2912 2915 2916 CONECT 2915 2914 CONECT 2916 2914 2917 CONECT 2917 2916 CONECT 2919 2920 2921 CONECT 2920 2919 CONECT 2921 2919 2922 2923 CONECT 2922 2921 CONECT 2923 2921 2924 CONECT 2924 2923 CONECT 2925 2926 2927 CONECT 2926 2925 CONECT 2927 2925 2928 2929 CONECT 2928 2927 CONECT 2929 2927 2930 CONECT 2930 2929 MASTER 459 0 5 16 0 0 10 6 3034 8 24 32 END