HEADER HYDROLASE 10-JUL-20 6XQZ TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PBP2 S310A FROM NEISSERIA TITLE 2 GONORRHOEAE AT PH 7.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE PENA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 2,PBP-2,PENICILLIN-BINDING COMPND 5 PROTEIN 2,PBP-2; COMPND 6 EC: 3.4.16.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: PENA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PBP2, BETA-LACTAM, ANTIBIOTIC TARGET, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.A.FENTON,P.ZHOU,C.DAVIES REVDAT 3 18-OCT-23 6XQZ 1 REMARK REVDAT 2 02-FEB-22 6XQZ 1 JRNL REVDAT 1 21-JUL-21 6XQZ 0 JRNL AUTH B.A.FENTON,J.TOMBERG,C.A.SCIANDRA,R.A.NICHOLAS,C.DAVIES, JRNL AUTH 2 P.ZHOU JRNL TITL MUTATIONS IN PBP2 FROM CEFTRIAXONE-RESISTANT NEISSERIA JRNL TITL 2 GONORRHOEAE ALTER THE DYNAMICS OF THE BETA 3-BETA 4 LOOP TO JRNL TITL 3 FAVOR A LOW-AFFINITY DRUG-BINDING STATE. JRNL REF J.BIOL.CHEM. V. 297 01188 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34529975 JRNL DOI 10.1016/J.JBC.2021.101188 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 35209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5200 - 4.7900 0.99 2666 140 0.1502 0.1752 REMARK 3 2 4.7900 - 3.8100 0.99 2621 138 0.1388 0.1838 REMARK 3 3 3.8100 - 3.3300 0.99 2602 137 0.1601 0.2046 REMARK 3 4 3.3300 - 3.0200 0.99 2591 137 0.1766 0.2153 REMARK 3 5 3.0200 - 2.8000 0.98 2585 136 0.1745 0.2352 REMARK 3 6 2.8000 - 2.6400 0.98 2576 135 0.1764 0.2208 REMARK 3 7 2.6400 - 2.5100 0.98 2533 134 0.1677 0.2176 REMARK 3 8 2.5100 - 2.4000 0.98 2585 136 0.1716 0.2270 REMARK 3 9 2.4000 - 2.3100 0.98 2557 135 0.1737 0.2516 REMARK 3 10 2.3100 - 2.2300 0.98 2537 133 0.1736 0.2227 REMARK 3 11 2.2300 - 2.1600 0.97 2531 133 0.1804 0.2796 REMARK 3 12 2.1600 - 2.1000 0.97 2577 136 0.1852 0.2368 REMARK 3 13 2.1000 - 2.0400 0.97 2487 131 0.1966 0.2638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5036 REMARK 3 ANGLE : 0.944 6840 REMARK 3 CHIRALITY : 0.057 771 REMARK 3 PLANARITY : 0.007 892 REMARK 3 DIHEDRAL : 22.055 1879 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 236 THROUGH 574) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8050 -18.6286 -37.9841 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.0926 REMARK 3 T33: 0.1662 T12: -0.0124 REMARK 3 T13: -0.0072 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.0880 L22: 1.0397 REMARK 3 L33: 0.8172 L12: -0.3036 REMARK 3 L13: -0.0822 L23: -0.1761 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0250 S13: 0.0771 REMARK 3 S21: -0.0017 S22: -0.0295 S23: -0.0494 REMARK 3 S31: -0.0313 S32: 0.0498 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 237 THROUGH 574) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5841 -39.4626 -5.2403 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.3555 REMARK 3 T33: 0.1931 T12: 0.0782 REMARK 3 T13: -0.0033 T23: 0.0907 REMARK 3 L TENSOR REMARK 3 L11: 0.3091 L22: 0.6416 REMARK 3 L33: 1.1866 L12: 0.1081 REMARK 3 L13: -0.3012 L23: -0.1990 REMARK 3 S TENSOR REMARK 3 S11: -0.0978 S12: -0.2613 S13: -0.1026 REMARK 3 S21: 0.1137 S22: -0.0361 S23: -0.0665 REMARK 3 S31: 0.0358 S32: 0.3291 S33: -0.1608 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 237 THROUGH 241 OR REMARK 3 RESID 244 THROUGH 251 OR RESID 253 REMARK 3 THROUGH 255 OR RESID 257 THROUGH 263 OR REMARK 3 RESID 265 THROUGH 304 OR RESID 306 REMARK 3 THROUGH 311 OR RESID 313 THROUGH 347 OR REMARK 3 RESID 349 THROUGH 354 OR RESID 357 REMARK 3 THROUGH 410 OR RESID 412 THROUGH 471 OR REMARK 3 RESID 473 THROUGH 500 OR RESID 513 REMARK 3 THROUGH 533 OR RESID 535 THROUGH 546 OR REMARK 3 RESID 548 THROUGH 574)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 237 THROUGH 241 OR REMARK 3 RESID 244 THROUGH 251 OR RESID 253 REMARK 3 THROUGH 255 OR RESID 257 THROUGH 263 OR REMARK 3 RESID 265 THROUGH 304 OR RESID 306 REMARK 3 THROUGH 311 OR RESID 313 THROUGH 347 OR REMARK 3 RESID 349 THROUGH 354 OR RESID 357 REMARK 3 THROUGH 410 OR RESID 412 THROUGH 471 OR REMARK 3 RESID 473 THROUGH 533 OR RESID 535 REMARK 3 THROUGH 546 OR RESID 548 THROUGH 574)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35213 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 42.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.17.1_3660 REMARK 200 STARTING MODEL: 6P53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 400, 50 MM HEPES (PH 7.5) 25 REMARK 280 MM TRIS (PH 7.5), 50 MM KCL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.74000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 235 REMARK 465 VAL A 505 REMARK 465 ASN A 506 REMARK 465 GLY A 507 REMARK 465 ARG A 508 REMARK 465 ASP B 235 REMARK 465 MET B 236 REMARK 465 ALA B 501 REMARK 465 ARG B 502 REMARK 465 LYS B 503 REMARK 465 PHE B 504 REMARK 465 VAL B 505 REMARK 465 ASN B 506 REMARK 465 GLY B 507 REMARK 465 ARG B 508 REMARK 465 TYR B 509 REMARK 465 ALA B 510 REMARK 465 ASP B 511 REMARK 465 ASN B 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 844 O HOH A 860 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN B 259 NZ LYS B 525 1655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 362 68.07 62.17 REMARK 500 HIS A 440 41.26 -91.71 REMARK 500 LEU A 447 152.61 74.36 REMARK 500 HIS B 440 42.45 -91.41 REMARK 500 LEU B 447 155.22 73.18 REMARK 500 HIS B 514 85.99 57.62 REMARK 500 GLU B 537 65.92 61.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 601 DBREF 6XQZ A 237 282 UNP P08149 PBP2_NEIGO 237 282 DBREF 6XQZ A 298 574 UNP P08149 PBP2_NEIGO 298 574 DBREF 6XQZ B 237 282 UNP P08149 PBP2_NEIGO 237 282 DBREF 6XQZ B 298 574 UNP P08149 PBP2_NEIGO 298 574 SEQADV 6XQZ ASP A 235 UNP P08149 EXPRESSION TAG SEQADV 6XQZ MET A 236 UNP P08149 EXPRESSION TAG SEQADV 6XQZ GLY A 296 UNP P08149 LINKER SEQADV 6XQZ GLY A 297 UNP P08149 LINKER SEQADV 6XQZ ALA A 310 UNP P08149 SER 310 ENGINEERED MUTATION SEQADV 6XQZ ASP B 235 UNP P08149 EXPRESSION TAG SEQADV 6XQZ MET B 236 UNP P08149 EXPRESSION TAG SEQADV 6XQZ GLY B 296 UNP P08149 LINKER SEQADV 6XQZ GLY B 297 UNP P08149 LINKER SEQADV 6XQZ ALA B 310 UNP P08149 SER 310 ENGINEERED MUTATION SEQRES 1 A 327 ASP MET LEU SER LEU ASP GLN ARG ILE GLN THR LEU ALA SEQRES 2 A 327 TYR GLU GLU LEU ASN LYS ALA VAL GLU TYR HIS GLN ALA SEQRES 3 A 327 LYS ALA GLY THR VAL VAL VAL LEU ASP ALA ARG THR GLY SEQRES 4 A 327 GLU ILE LEU ALA LEU ALA ASN THR PRO GLY GLY ARG ASN SEQRES 5 A 327 ARG ALA VAL THR ASP MET ILE GLU PRO GLY ALA ALA ILE SEQRES 6 A 327 LYS PRO PHE VAL ILE ALA LYS ALA LEU ASP ALA GLY LYS SEQRES 7 A 327 THR ASP LEU ASN GLU ARG LEU ASN THR GLN PRO TYR LYS SEQRES 8 A 327 ILE GLY PRO SER PRO VAL ARG ASP THR HIS VAL TYR PRO SEQRES 9 A 327 SER LEU ASP VAL ARG GLY ILE MET GLN LYS SER SER ASN SEQRES 10 A 327 VAL GLY THR SER LYS LEU SER ALA ARG PHE GLY ALA GLU SEQRES 11 A 327 GLU MET TYR ASP PHE TYR HIS GLU LEU GLY ILE GLY VAL SEQRES 12 A 327 ARG MET HIS SER GLY PHE PRO GLY GLU THR ALA GLY LEU SEQRES 13 A 327 LEU ARG ASN TRP ARG ARG TRP ARG PRO ILE GLU GLN ALA SEQRES 14 A 327 THR MET SER PHE GLY TYR GLY LEU GLN LEU SER LEU LEU SEQRES 15 A 327 GLN LEU ALA ARG ALA TYR THR ALA LEU THR HIS ASP GLY SEQRES 16 A 327 VAL LEU LEU PRO LEU SER PHE GLU LYS GLN ALA VAL ALA SEQRES 17 A 327 PRO GLN GLY LYS ARG ILE PHE LYS GLU SER THR ALA ARG SEQRES 18 A 327 GLU VAL ARG ASN LEU MET VAL SER VAL THR GLU PRO GLY SEQRES 19 A 327 GLY THR GLY THR ALA GLY ALA VAL ASP GLY PHE ASP VAL SEQRES 20 A 327 GLY ALA LYS THR GLY THR ALA ARG LYS PHE VAL ASN GLY SEQRES 21 A 327 ARG TYR ALA ASP ASN LYS HIS VAL ALA THR PHE ILE GLY SEQRES 22 A 327 PHE ALA PRO ALA LYS ASN PRO ARG VAL ILE VAL ALA VAL SEQRES 23 A 327 THR ILE ASP GLU PRO THR ALA HIS GLY TYR TYR GLY GLY SEQRES 24 A 327 VAL VAL ALA GLY PRO PRO PHE LYS LYS ILE MET GLY GLY SEQRES 25 A 327 SER LEU ASN ILE LEU GLY ILE SER PRO THR LYS PRO LEU SEQRES 26 A 327 THR ALA SEQRES 1 B 327 ASP MET LEU SER LEU ASP GLN ARG ILE GLN THR LEU ALA SEQRES 2 B 327 TYR GLU GLU LEU ASN LYS ALA VAL GLU TYR HIS GLN ALA SEQRES 3 B 327 LYS ALA GLY THR VAL VAL VAL LEU ASP ALA ARG THR GLY SEQRES 4 B 327 GLU ILE LEU ALA LEU ALA ASN THR PRO GLY GLY ARG ASN SEQRES 5 B 327 ARG ALA VAL THR ASP MET ILE GLU PRO GLY ALA ALA ILE SEQRES 6 B 327 LYS PRO PHE VAL ILE ALA LYS ALA LEU ASP ALA GLY LYS SEQRES 7 B 327 THR ASP LEU ASN GLU ARG LEU ASN THR GLN PRO TYR LYS SEQRES 8 B 327 ILE GLY PRO SER PRO VAL ARG ASP THR HIS VAL TYR PRO SEQRES 9 B 327 SER LEU ASP VAL ARG GLY ILE MET GLN LYS SER SER ASN SEQRES 10 B 327 VAL GLY THR SER LYS LEU SER ALA ARG PHE GLY ALA GLU SEQRES 11 B 327 GLU MET TYR ASP PHE TYR HIS GLU LEU GLY ILE GLY VAL SEQRES 12 B 327 ARG MET HIS SER GLY PHE PRO GLY GLU THR ALA GLY LEU SEQRES 13 B 327 LEU ARG ASN TRP ARG ARG TRP ARG PRO ILE GLU GLN ALA SEQRES 14 B 327 THR MET SER PHE GLY TYR GLY LEU GLN LEU SER LEU LEU SEQRES 15 B 327 GLN LEU ALA ARG ALA TYR THR ALA LEU THR HIS ASP GLY SEQRES 16 B 327 VAL LEU LEU PRO LEU SER PHE GLU LYS GLN ALA VAL ALA SEQRES 17 B 327 PRO GLN GLY LYS ARG ILE PHE LYS GLU SER THR ALA ARG SEQRES 18 B 327 GLU VAL ARG ASN LEU MET VAL SER VAL THR GLU PRO GLY SEQRES 19 B 327 GLY THR GLY THR ALA GLY ALA VAL ASP GLY PHE ASP VAL SEQRES 20 B 327 GLY ALA LYS THR GLY THR ALA ARG LYS PHE VAL ASN GLY SEQRES 21 B 327 ARG TYR ALA ASP ASN LYS HIS VAL ALA THR PHE ILE GLY SEQRES 22 B 327 PHE ALA PRO ALA LYS ASN PRO ARG VAL ILE VAL ALA VAL SEQRES 23 B 327 THR ILE ASP GLU PRO THR ALA HIS GLY TYR TYR GLY GLY SEQRES 24 B 327 VAL VAL ALA GLY PRO PRO PHE LYS LYS ILE MET GLY GLY SEQRES 25 B 327 SER LEU ASN ILE LEU GLY ILE SER PRO THR LYS PRO LEU SEQRES 26 B 327 THR ALA HET CL A 601 1 HET CL A 602 1 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET SO4 A 606 5 HET EDO B 601 4 HET EDO B 602 4 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 2(CL 1-) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 8 SO4 O4 S 2- FORMUL 11 HOH *270(H2 O) HELIX 1 AA1 ASP A 240 HIS A 258 1 19 HELIX 2 AA2 ASN A 299 ASP A 304 1 6 HELIX 3 AA3 PRO A 308 ALA A 311 5 4 HELIX 4 AA4 ILE A 312 ALA A 323 1 12 HELIX 5 AA5 VAL A 355 SER A 362 1 8 HELIX 6 AA6 SER A 363 ALA A 372 1 10 HELIX 7 AA7 GLY A 375 LEU A 386 1 12 HELIX 8 AA8 ASN A 406 TRP A 410 5 5 HELIX 9 AA9 ARG A 411 PHE A 420 1 10 HELIX 10 AB1 SER A 427 HIS A 440 1 14 HELIX 11 AB2 LYS A 463 SER A 476 1 14 HELIX 12 AB3 VAL A 477 GLU A 479 5 3 HELIX 13 AB4 GLY A 484 ALA A 488 5 5 HELIX 14 AB5 TYR A 544 LEU A 564 1 21 HELIX 15 AB6 ASP B 240 HIS B 258 1 19 HELIX 16 AB7 ASN B 299 ASP B 304 1 6 HELIX 17 AB8 PRO B 308 ALA B 311 5 4 HELIX 18 AB9 ILE B 312 ALA B 323 1 12 HELIX 19 AC1 VAL B 355 SER B 362 1 8 HELIX 20 AC2 SER B 363 ALA B 372 1 10 HELIX 21 AC3 GLY B 375 LEU B 386 1 12 HELIX 22 AC4 ASN B 406 TRP B 410 5 5 HELIX 23 AC5 ARG B 411 PHE B 420 1 10 HELIX 24 AC6 SER B 427 HIS B 440 1 14 HELIX 25 AC7 LYS B 463 VAL B 475 1 13 HELIX 26 AC8 SER B 476 THR B 478 5 3 HELIX 27 AC9 GLY B 484 ALA B 488 5 5 HELIX 28 AD1 TYR B 544 LEU B 564 1 21 SHEET 1 AA1 5 ILE A 275 THR A 281 0 SHEET 2 AA1 5 ALA A 262 ASP A 269 -1 N VAL A 267 O ALA A 277 SHEET 3 AA1 5 VAL A 529 ASP A 536 -1 O ASP A 536 N ALA A 262 SHEET 4 AA1 5 HIS A 514 ALA A 522 -1 N ALA A 516 O ILE A 535 SHEET 5 AA1 5 GLY A 495 ARG A 502 -1 N GLY A 499 O THR A 517 SHEET 1 AA2 2 ARG A 331 ASN A 333 0 SHEET 2 AA2 2 SER A 352 ASP A 354 -1 O LEU A 353 N LEU A 332 SHEET 1 AA3 2 TYR A 337 ILE A 339 0 SHEET 2 AA3 2 SER A 342 VAL A 344 -1 O VAL A 344 N TYR A 337 SHEET 1 AA4 2 VAL A 443 LEU A 444 0 SHEET 2 AA4 2 LYS A 459 ARG A 460 -1 O LYS A 459 N LEU A 444 SHEET 1 AA5 5 ILE B 275 THR B 281 0 SHEET 2 AA5 5 ALA B 262 ASP B 269 -1 N GLY B 263 O THR B 281 SHEET 3 AA5 5 VAL B 529 ASP B 536 -1 O ASP B 536 N ALA B 262 SHEET 4 AA5 5 VAL B 515 ALA B 522 -1 N PHE B 518 O VAL B 533 SHEET 5 AA5 5 GLY B 495 GLY B 499 -1 N GLY B 499 O THR B 517 SHEET 1 AA6 2 ARG B 331 ASN B 333 0 SHEET 2 AA6 2 SER B 352 ASP B 354 -1 O LEU B 353 N LEU B 332 SHEET 1 AA7 2 TYR B 337 ILE B 339 0 SHEET 2 AA7 2 SER B 342 VAL B 344 -1 O VAL B 344 N TYR B 337 SHEET 1 AA8 2 VAL B 443 LEU B 444 0 SHEET 2 AA8 2 LYS B 459 ARG B 460 -1 O LYS B 459 N LEU B 444 CISPEP 1 THR A 281 PRO A 282 0 -0.92 CISPEP 2 ALA A 522 PRO A 523 0 -13.10 CISPEP 3 THR B 281 PRO B 282 0 6.00 CISPEP 4 ALA B 522 PRO B 523 0 -14.36 SITE 1 AC1 2 ARG A 391 ASN B 406 SITE 1 AC2 4 PRO A 523 ALA A 524 LYS A 525 HOH A 759 SITE 1 AC3 6 MET A 392 HIS A 393 SER A 394 LEU A 447 SITE 2 AC3 6 PHE A 449 HOH A 782 SITE 1 AC4 4 ARG A 460 LYS A 463 GLU A 464 HOH A 833 SITE 1 AC5 2 MET A 236 LEU A 237 SITE 1 AC6 6 SER A 362 LYS A 497 THR A 498 GLY A 499 SITE 2 AC6 6 THR A 500 HOH A 776 SITE 1 AC7 4 PRO B 336 TYR B 337 PRO B 343 ARG B 345 CRYST1 42.540 77.480 86.710 90.00 91.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023507 0.000000 0.000768 0.00000 SCALE2 0.000000 0.012907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011539 0.00000